Computational systems biology methods and protocols - Huang, Tao (Springer New York, 2018)
DNA Sequencing Data Analysis – Transcriptome Sequencing: RNA-seq – Capture Hybridization of Long-range DNA Fragments for High-throughput Sequencing – The Introduction and Clinical Application of Cell-free Tumour DNA – Bioinformatics Analysis for Cell-free Tumor DNA Sequencing Data – An Overview of Genome-Wide Association Studies – Integrative Analysis of Omics Big Data – The Reconstruction and Analysis of Gene Regulatory Networks – Differential Coexpression Network Analysis for Gene Expression Data – iSeq: Web-based RNA-seq Data Analysis and Visualization – Revisit of Machine Learning Supported Biological and Biomedical Studies – Identifying Interactions Between Long Non-coding RNAs and Diseases Based on Computational Methods – Survey Of Computational Approaches For Prediction of DNA-binding Residues on Protein Surfaces – Computational Prediction of Protein O-GlcNAc Modification – Machine Learning Based Modeling of Drug Toxicity – Metabolomics: A High-throughput Platform for Metabolite Profile Exploration – Single-Cell Protein Assays–A Review – Data Analysis in Single-cell Transcriptome Sequencing – Applications of Single-cell Sequencing For Multi-omics – Progress on Diagnosis of Tuberculous Meningitis – Insights of Acute Lymphoblastic Leukemia with Development of Genomic Investigation