Protein Structure Prediction (Springer US, 2020)
Structural Modeling and Ligand Binding Prediction for Analysis of Structure-Unknown and Function-Unknown Proteins Using FORTE Alignment and PoSSuM Pocket Search -- The MULTICOM Protein Structure Prediction Server Empowered by Deep Learning and Contact Distance Prediction -- The Genome3D Consortium for Structural Annotations of Selected Model Organisms -- Estimating the Quality of 3D Protein Models Using the ModFOLD7 Server -- Prediction of Intrinsic Disorder with Quality Assessment Using QUARTER -- Modeling of Three-Dimensional RNA Structures Using SimRNA -- Modeling Protein Homo-Oligomer Structures with GalaxyHomomer Web Server -- Template-Based Modeling of Protein Complexes Using the PPI3D Web Server -- Protein-Protein and Protein-Peptide Docking with ClusPro Server -- Modeling of Protein Complexes and Molecular Assemblies with pyDock -- A Guide for Protein-Protein Docking Using SwarmDock -- Modeling Protein-Protein or Protein-DNA/RNA Complexes Using the HDOCK Webserver -- IDP-LZerD: Software for Modeling Disordered Protein Interactions -- AnAnaS: Software for Analytical Analysis of Symmetries in Protein Structures -- MDockPeP: A Webserver for Blind Prediction of Protein-Peptide Complex Structures -- Protocols for All-Atom Reconstruction and High-Resolution Refinement of Protein-Peptide Complex Structures -- DOCKGROUND Tool for Development and Benchmarking of Protein Docking Procedures -- Molecular Dynamics Flexible Fitting: All You Want to Know about Resolution Exchange -- Protein Structure Modeling from Cryo-EM Map Using MAINMAST and MAINMAST-GUI Plugin -- Protocols for Fast Simulations of Protein Structure Flexibility Using CABS-Flex and SURPASS.