Practical R for biologists an introduction - Quicke, Donald L. J.; Butcher, Buntika A.; Kruft Welton, Rachel A. (CABI, 2021)
1: How to Use this Book 2: Installing and Running R 3: Very Basic R Syntax 4: First Simple Programs and Graphics 5: The Dataframe Concept 6: Plotting Biological Data in Various Ways 7: The Grammar of Graphics Family of Packages 8: Sets and Venn diagrams 9: Statistics: Choosing the Right Test 10: Commonly Used Measures and Statistical Tests 11: Regression and Correlation Analyses 12: Count Data as Response Variable 13: Analysis of Variance (ANOVA) 14: Analysis of Covariance (ANCOVA) 15: More Generalized Linear Modelling 16: Monte Carlo Tests and Randomization 17: Principal Components Analysis 18: Species Abundance, Accumulation and Diversity Data 19: Survivorship 20: Dates and Julian Dates 21: Mapping and Parsing Text Input for Data 22: More on Manipulating Text 23: Phylogenies and Trees 24: Working with DNA Sequences and other character data 25: Spacing in Two Dimensions 26: Population Modelling Including Spatially Explicit Models 27: More on "apply" Family of Functions - Avoid Loops to get More Speed 28: Food webs and simple graphics 29: Adding Photographs 30: Standard Distributions in R 31: Reading and Writing Data to and from Files