Phylogenomics: a primer
Phylogenomics: A Primer, Second Edition is for advanced undergraduate and graduate biology students studying molecular biology, comparative biology, evolution, genomics, and biodiversity. This book explains the essential concepts underlying the storage and manipulation of genomics level data, constr...
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| Hauptverfasser: | , , |
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| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Boca Raton ; London ; New York
CRC Press, Taylor & Francis Group
2021
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| Ausgabe: | Second Edition |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Zusammenfassung: | Phylogenomics: A Primer, Second Edition is for advanced undergraduate and graduate biology students studying molecular biology, comparative biology, evolution, genomics, and biodiversity. This book explains the essential concepts underlying the storage and manipulation of genomics level data, construction of phylogenetic trees, population genetics, natural selection, the tree of life, DNA barcoding, and metagenomics. The inclusion of problem-solving exercises in each chapter provides students with a solid grasp of the important molecular and evolutionary questions facing modern biologists as well as the tools needed to answer them |
| Beschreibung: | xviii, 380 Seiten Illustrationen, Diagramme 279 mm |
| ISBN: | 9780367028497 9780367028527 |
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Datensatz im Suchindex
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| adam_text | Contents Preface xvii Acknowledgements xix Section I Foundations of Phylogenomics Chapter 1 what is Phylogenomics? Chapter 2 The Biology and Sequencing of Genetic Information: DNA, RNA, and Proteins 15 Chapters Evolutionary principles: Populations and Trees 33 3 Section II Data Chapter 4 Chapter 5 Data Storage—The Basics 49 Sequence Alignment and Searching Sequence Databases 63 Chapter 6 Multiple Alignments 81 Chapter 7 Genome Sequencing and Annotation 91 Chapter 8 Genomics Databases: Genomes and Transcriptomes 101 Chapter 9 Amplicon Databases: Bold and Bacterial 16S rDNA Databases 115 Section III Phylogenetic/Phylogenomic Analysis Chapter 10 introduction to Tree Building 131 Chapter 11 Distance and Clustering 145 Chapter 12 Maximum Likelihood 157 Chapter 13 Search Strategies and Robustness 167 Chapter 14 Rate Heterogeneity, Long Branch Attraction, and Likelihood Models 177 Chapter 15 Bayesian Approaches in phylogenetics 187 Chapter 16 Incongruence of Gene Trees 199 Chapter 17 Phylogenetic Programs and Websites 213
Viii CONTENTS Section IV Population Genomics Chapter 18 Chapter 19 Chapter 20 Chapter 21 Population Genetics and Genomes Population Genomics Approaches Detecting Natural Selection: The Basics Refining the Approach to Natural selection at the Molecular Level 225 245 263 277 Section V Phylogenomics in Action Chapter 22 Chapter 23 Chapter 24 Chapter 25 Chapter 26 Index Constructing phylogenomic Matrices Phylogenomics and the Tree of Life Comparative Genomics Environmental DNA (eDNA) Phylogenomic Approaches to Understanding Gene Function and Evolution 295 311 331 347 359 373
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Contents Preface xvii Acknowledgements xix Section I Foundations of Phylogenomics Chapter 1 what is Phylogenomics? Chapter 2 The Biology and Sequencing of Genetic Information: DNA, RNA, and Proteins 15 Chapters Evolutionary principles: Populations and Trees 33 3 Section II Data Chapter 4 Chapter 5 Data Storage—The Basics 49 Sequence Alignment and Searching Sequence Databases 63 Chapter 6 Multiple Alignments 81 Chapter 7 Genome Sequencing and Annotation 91 Chapter 8 Genomics Databases: Genomes and Transcriptomes 101 Chapter 9 Amplicon Databases: Bold and Bacterial 16S rDNA Databases 115 Section III Phylogenetic/Phylogenomic Analysis Chapter 10 introduction to Tree Building 131 Chapter 11 Distance and Clustering 145 Chapter 12 Maximum Likelihood 157 Chapter 13 Search Strategies and Robustness 167 Chapter 14 Rate Heterogeneity, Long Branch Attraction, and Likelihood Models 177 Chapter 15 Bayesian Approaches in phylogenetics 187 Chapter 16 Incongruence of Gene Trees 199 Chapter 17 Phylogenetic Programs and Websites 213
Viii CONTENTS Section IV Population Genomics Chapter 18 Chapter 19 Chapter 20 Chapter 21 Population Genetics and Genomes Population Genomics Approaches Detecting Natural Selection: The Basics Refining the Approach to Natural selection at the Molecular Level 225 245 263 277 Section V Phylogenomics in Action Chapter 22 Chapter 23 Chapter 24 Chapter 25 Chapter 26 Index Constructing phylogenomic Matrices Phylogenomics and the Tree of Life Comparative Genomics Environmental DNA (eDNA) Phylogenomic Approaches to Understanding Gene Function and Evolution 295 311 331 347 359 373 |
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| author | DeSalle, Rob 1954- Tessler, Michael Rosenfeld, Jeffrey |
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| discipline | Biologie |
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| edition | Second Edition |
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| illustrated | Illustrated |
| index_date | 2024-07-03T14:56:05Z |
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| institution | BVB |
| isbn | 9780367028497 9780367028527 |
| language | English |
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| spelling | DeSalle, Rob 1954- Verfasser (DE-588)1017333343 aut Phylogenomics a primer Rob DeSalle, Michael Tessler, Jeffrey Rosenfeld Second Edition Boca Raton ; London ; New York CRC Press, Taylor & Francis Group 2021 xviii, 380 Seiten Illustrationen, Diagramme 279 mm txt rdacontent n rdamedia nc rdacarrier Phylogenomics: A Primer, Second Edition is for advanced undergraduate and graduate biology students studying molecular biology, comparative biology, evolution, genomics, and biodiversity. This book explains the essential concepts underlying the storage and manipulation of genomics level data, construction of phylogenetic trees, population genetics, natural selection, the tree of life, DNA barcoding, and metagenomics. The inclusion of problem-solving exercises in each chapter provides students with a solid grasp of the important molecular and evolutionary questions facing modern biologists as well as the tools needed to answer them bisacsh / SCIENCE / Biotechnology bisacsh / SCIENCE / Life Sciences / Cytology Phylogenetik (DE-588)4174591-7 gnd rswk-swf Genanalyse (DE-588)4200230-8 gnd rswk-swf Genomik (DE-588)4776397-8 gnd rswk-swf Phylogenetik (DE-588)4174591-7 s Genomik (DE-588)4776397-8 s Genanalyse (DE-588)4200230-8 s DE-604 Tessler, Michael Verfasser aut Rosenfeld, Jeffrey Verfasser (DE-588)1219516597 aut Erscheint auch als Online-Ausgabe 9780429397547 Digitalisierung UB Regensburg - ADAM Catalogue Enrichment application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=032210628&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | DeSalle, Rob 1954- Tessler, Michael Rosenfeld, Jeffrey Phylogenomics a primer bisacsh / SCIENCE / Biotechnology bisacsh / SCIENCE / Life Sciences / Cytology Phylogenetik (DE-588)4174591-7 gnd Genanalyse (DE-588)4200230-8 gnd Genomik (DE-588)4776397-8 gnd |
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| title | Phylogenomics a primer |
| title_auth | Phylogenomics a primer |
| title_exact_search | Phylogenomics a primer |
| title_exact_search_txtP | Phylogenomics a primer |
| title_full | Phylogenomics a primer Rob DeSalle, Michael Tessler, Jeffrey Rosenfeld |
| title_fullStr | Phylogenomics a primer Rob DeSalle, Michael Tessler, Jeffrey Rosenfeld |
| title_full_unstemmed | Phylogenomics a primer Rob DeSalle, Michael Tessler, Jeffrey Rosenfeld |
| title_short | Phylogenomics |
| title_sort | phylogenomics a primer |
| title_sub | a primer |
| topic | bisacsh / SCIENCE / Biotechnology bisacsh / SCIENCE / Life Sciences / Cytology Phylogenetik (DE-588)4174591-7 gnd Genanalyse (DE-588)4200230-8 gnd Genomik (DE-588)4776397-8 gnd |
| topic_facet | bisacsh / SCIENCE / Biotechnology bisacsh / SCIENCE / Life Sciences / Cytology Phylogenetik Genanalyse Genomik |
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