Cell-derived matrices: Part A
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| Other Authors: | , , |
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| Format: | Book |
| Language: | English |
| Published: |
Cambridge, MA ; San Diego, CA
Academic Press
2020
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| Edition: | First edition |
| Series: | Methods in cell biology
Volume 156 |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Physical Description: | xvii, 332 Seiten Illustrationen, Diagramme |
| ISBN: | 9780128201725 012820172X |
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| adam_text | Contents Contributors............................................................................................................. xi Preface.................................................................................................................. xvii SECTION I Decellularization and characterization _________ methods______________________________ CHAPTER 1 A step-by-step protocol for generating human fibroblast cell-derived completely biological extracellular matrix scaffolds......................................... 3 Dhavan Sharma, Morgan Ferguson, Feng Zhao 1. Introduction.................................................................................... 4 2. Materials and methods................................................................... 5 3. Evaluation of hDF derived ECM scaffold.....................................8 4. Discussion.....................................................................................10 5. Conclusion.................................................................................... 12 Acknowledgments............................................................................. 12 References..........................................................................................12 CHAPTER 2 Preparation of osteogenic matrices from cultured cells................................................................... 15 Carl A. Gregory, Eoin P. McNeill, Simin Pan 1. Introduction.................................................................................. 16 2. Osteogenic tissue culture and relevant
assays............................. 18 3. Purification and characterization of OECM................................ 27 4. Coating of OECM onto growth surfaces..................................... 33 5. Discussion, future prospects........................................................ 38 Acknowledgments............................................................................. 39 References......................................................................................... 39 CHAPTER 3 1. 2. 3. 4. Decellularized hASCs-derived matrices as biomaterials for 3D in vitro approaches................45 Fátima Raquel Maia, Rui Luís Reis, Joaquim Miguel Oliveira Introduction.................................................................................. 46 Materials and methods................................................................. 48 Evaluation of effectiveness of the decellularization................... 51 Discussion.................................................................................... 55 V
Contents 5. Conclusions........................................................................... 56 Acknowledgments..............................................................................56 References..........................................................................................57 CHAPTER 4 Characterization of the elastic properties of extracellular matrix models by atomic force microscopy........................................................................59 J, Otero, D. Navajas, J. Alcaraz 1. Introduction...................................................................................61 2. Material, equipments and reagents...............................................63 3. Protocol to measure the mechanical properties of ECM models............................................................................ 65 4. Troubieshooting and optimization............................................... 70 5. Examples of applications..............................................................73 6. Alternative approaches................................................................. 77 7. Summary...................................................................................... 78 Acknowledgments............................................................................. 78 References......................................................................................... 79 CHAPTER 5 Glycosaminoglycan disaccharide compositional analysis of cell-derived extracellular matrices using 4 . chromatography-tandem mass
spectrometry.................................................................... 85 João C. Silva, Marta S. Carvalho, Ke Xia, Joaquim M.S. Cabral, Claudia L. da Silva, Frederico C. Ferreira, Deepak Vashishth, Robert J. Linhardt 1. Introduction.................................................................................. 86 2. GAG compositional and structural analysis using LC-MS/MS...................................................................................88 3. Overview of the protocol............................................................. 89 4. Preparation of decellularized cell-derived matrices.................... 89 5. Morphological characterization of ceU-derived matrices............92 6. GAG disaccharide compositional analysis of cell-derived matrices........................................................................................ 96 7. Technical considerations and possible improvements...............101 8. Conclusions................................................................................ 102 Acknowledgments........................................................................... 103 References....................................................................................... 103
Contents SECTION II Engineering cell-derived matrices with __________advanced characteristics________________ CHAPTER 6 Engineering clinically-relevant human fibroblastic cell-derived extracellular matrices...................................................................................... 109 Janusz Franco-Barraza, KristopherS. Raghavan, Tiffany Luong, Edna Cukierman 1. Introduction.....................................................................................Ill 2. Protocols for synthesis of 3D fibroblastic cell-derived ECMs (fCDMs).......................................................................................... 112 3. Precursor techniques...................................................................... 150 4. Analysis and statistics....................................................................150 5. Limitations of the protocol............................................................152 6. Alternative methods....................................................................... 152 7. Troubleshooting and optimization................................................ 152 8. Summary......................................................................................... 154 Acknowledgments................................................................................155 References............................................................................................ 155 CHAPTER 7 Engineering cell-derived matrices with controlled 3D architectures for pathophysiological studies.................................................161 Enrico
Almici, David Caballero, Joan Montera Boronat, Josep Samitier Martí 1. Introduction..................................................................................... 163 2. Background..................................................................................... 163 3. Materials and methods................................................................... 165 4. Protocol for fabrication of eCDM guiding templates.................168 5. Protocol for eCDM deposition......................................................171 6. Discussion....................................................................................... 176 7. Conclusions..................................................................................... 180 Acknowledgments................................................................................182 References............................................................................................ 182 CHAPTER 8 Generation of fluorescent cell-derived-matrix to study 3D cell migration.................................................. 185 Amélie Luise Godeau, Hélène Delanoë-Ayari, Daniel Riveline 1. Introduction..................................................................................... 186 2. Generation of fluorescent CDM................................................... 188 vii
viii Contents 3. Characterization of cell migration in fluorescent CDM............ 194 4. Discussion................................................................................... 199 5. Conclusion.................................................................................. 200 Acknowledgments............................................................................200 References........................................................................................201 CHAPTER 9 Re-engineered cell-derived extracellular matrix as a new approach to clarify the role of native ECM................................................................. 205 InsungYong, SeungWon Oh, Pilnam Kim 1. Introduction......................................................... 206 2. Characteristics of a native extracellular matrix......................... 209 3. Biochemically re-engineered cell-derived matrix......................214 4. Mechanophysically re-engineered cetl-derived matrix..............216 5. Re-engineering by the incorporation with other systems.......... 221 6. Conclusions................................................................................ 225 Acknowledgments........................................................................... 226 References....................................................................................... 226 SECTION III Cell-derived matrices for biomedical __________ applications__________________________ CHAPTER 10 Cell-derived matrices (CDM)—Methods, challenges and applications....................................... 235 H.W.
Cheng, M.T. Yuan, C.W. Li, B.P. Chan 1. Introduction................................................................................ 236 2. Cell-derivedmatrices—Methodological approaches.................. 239 3. Discussion—Applications, challenges and future perspectives................................................................................ 250 4. Conclusions................................................................................ 253 Acknowledgments.......................................................................... 254 References...................................................................................... 254 CHAPTER 11 Boosting collagen deposition with a lysyl oxidase/bone morphogenetic protein-1 cocktail........................................................................... 259 Tamara Rosel I-García, Fernando Rodríguez-Pascual 1. Introduction................................................................................ 260 2. Generation of HEK293 cell lines overexpressing LOX and BMP1.................................................................................. 262
Contents 3. Fibroblast culture, supplementation with LOX/BMP1 supernatants and assessment of collagen synthesis and deposition................................................................................264 4. Decellularization of fibroblast-derived matrix and its use as a substrate for the growth and differentiation of mesenchymal stem cells................................................................266 5. Conclusions.....................................................................................268 Acknowledgments............................................................................... 269 References............................................................................................ 269 CHAPTER 12 Generating cell-derived matrices from human trabecular meshwork cell cultures for mechanistic studies.............................................................. 271 Felix Yemanyi, Janice Vranka, VijayKrishna Raghunathan 1. Introduction.....................................................................................273 2. Generating CDMs from trabecular meshwork cells obtained from age-matched normal or glaucomatous human donor tissues...................................................................... 275 3. Generating vehicle control- and glucocorticoid-induced CDMs from human TM cells in culture...................................... 283 4. Crosslinking of CDMs with genipin............................................ 286 5. Alternative methods/procedures................................................... 290 6. Troubleshooting and
optimization................................................290 7. Application of CDMs in previous TM cell-ECM interaction studies.......................................................................... 290 8. CDMs as optimal substrates for regenerative outcomes in the conventional outflow pathways......................................... 295 9. Summary......................................................................................... 296 Acknowledgments............................................................................... 297 References............................................................................................ 297 CHAPTER 13 Methods in cell biology: Cell-derived matrices..........................................................................309 Elizabeth Pavez Lorié, Petra Boukamp 1. Introduction to human skin models..............................................310 2. Method of human fibroblast cell derived matrix........................315 3. Materials, equipment and reagents...............................................316 4. Protocols..........................................................................................318 5. Safety considerations and standards............................................ 323 6. Analysis and statistics....................................................................324
Contents 7. Pros and cons..............................................................................324 8. Alternative methods/procedures.................................................325 9. Troubleshooting and optimization (for the FDM).....................326 10. Summary and discussion........................................................... 326 References..........................................................................................327
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| adam_txt |
Contents Contributors. xi Preface. xvii SECTION I Decellularization and characterization _ methods_ CHAPTER 1 A step-by-step protocol for generating human fibroblast cell-derived completely biological extracellular matrix scaffolds. 3 Dhavan Sharma, Morgan Ferguson, Feng Zhao 1. Introduction. 4 2. Materials and methods. 5 3. Evaluation of hDF derived ECM scaffold.8 4. Discussion.10 5. Conclusion. 12 Acknowledgments. 12 References.12 CHAPTER 2 Preparation of osteogenic matrices from cultured cells. 15 Carl A. Gregory, Eoin P. McNeill, Simin Pan 1. Introduction. 16 2. Osteogenic tissue culture and relevant
assays. 18 3. Purification and characterization of OECM. 27 4. Coating of OECM onto growth surfaces. 33 5. Discussion, future prospects. 38 Acknowledgments. 39 References. 39 CHAPTER 3 1. 2. 3. 4. Decellularized hASCs-derived matrices as biomaterials for 3D in vitro approaches.45 Fátima Raquel Maia, Rui Luís Reis, Joaquim Miguel Oliveira Introduction. 46 Materials and methods. 48 Evaluation of effectiveness of the decellularization. 51 Discussion. 55 V
Contents 5. Conclusions. 56 Acknowledgments.56 References.57 CHAPTER 4 Characterization of the elastic properties of extracellular matrix models by atomic force microscopy.59 J, Otero, D. Navajas, J. Alcaraz 1. Introduction.61 2. Material, equipments and reagents.63 3. Protocol to measure the mechanical properties of ECM models. 65 4. Troubieshooting and optimization. 70 5. Examples of applications.73 6. Alternative approaches. 77 7. Summary. 78 Acknowledgments. 78 References. 79 CHAPTER 5 Glycosaminoglycan disaccharide compositional analysis of cell-derived extracellular matrices using 4 . ' chromatography-tandem mass
spectrometry. 85 João C. Silva, Marta S. Carvalho, Ke Xia, Joaquim M.S. Cabral, Claudia L. da Silva, Frederico C. Ferreira, Deepak Vashishth, Robert J. Linhardt 1. Introduction. 86 2. GAG compositional and structural analysis using LC-MS/MS.88 3. Overview of the protocol. 89 4. Preparation of decellularized cell-derived matrices. 89 5. Morphological characterization of ceU-derived matrices.92 6. GAG disaccharide compositional analysis of cell-derived matrices. 96 7. Technical considerations and possible improvements.101 8. Conclusions. 102 Acknowledgments. 103 References. 103
Contents SECTION II Engineering cell-derived matrices with _advanced characteristics_ CHAPTER 6 Engineering clinically-relevant human fibroblastic cell-derived extracellular matrices. 109 Janusz Franco-Barraza, KristopherS. Raghavan, Tiffany Luong, Edna Cukierman 1. Introduction.Ill 2. Protocols for synthesis of 3D fibroblastic cell-derived ECMs (fCDMs). 112 3. Precursor techniques. 150 4. Analysis and statistics.150 5. Limitations of the protocol.152 6. Alternative methods. 152 7. Troubleshooting and optimization. 152 8. Summary. 154 Acknowledgments.155 References. 155 CHAPTER 7 Engineering cell-derived matrices with controlled 3D architectures for pathophysiological studies.161 Enrico
Almici, David Caballero, Joan Montera Boronat, Josep Samitier Martí 1. Introduction. 163 2. Background. 163 3. Materials and methods. 165 4. Protocol for fabrication of eCDM guiding templates.168 5. Protocol for eCDM deposition.171 6. Discussion. 176 7. Conclusions. 180 Acknowledgments.182 References. 182 CHAPTER 8 Generation of fluorescent cell-derived-matrix to study 3D cell migration. 185 Amélie Luise Godeau, Hélène Delanoë-Ayari, Daniel Riveline 1. Introduction. 186 2. Generation of fluorescent CDM. 188 vii
viii Contents 3. Characterization of cell migration in fluorescent CDM. 194 4. Discussion. 199 5. Conclusion. 200 Acknowledgments.200 References.201 CHAPTER 9 Re-engineered cell-derived extracellular matrix as a new approach to clarify the role of native ECM. 205 InsungYong, SeungWon Oh, Pilnam Kim 1. Introduction. 206 2. Characteristics of a native extracellular matrix. 209 3. Biochemically re-engineered cell-derived matrix.214 4. Mechanophysically re-engineered cetl-derived matrix.216 5. Re-engineering by the incorporation with other systems. 221 6. Conclusions. 225 Acknowledgments. 226 References. 226 SECTION III Cell-derived matrices for biomedical _ applications_ CHAPTER 10 Cell-derived matrices (CDM)—Methods, challenges and applications. 235 H.W.
Cheng, M.T. Yuan, C.W. Li, B.P. Chan 1. Introduction. 236 2. Cell-derivedmatrices—Methodological approaches. 239 3. Discussion—Applications, challenges and future perspectives. 250 4. Conclusions. 253 Acknowledgments. 254 References. 254 CHAPTER 11 Boosting collagen deposition with a lysyl oxidase/bone morphogenetic protein-1 cocktail. 259 Tamara Rosel I-García, Fernando Rodríguez-Pascual 1. Introduction. 260 2. Generation of HEK293 cell lines overexpressing LOX and BMP1. 262
Contents 3. Fibroblast culture, supplementation with LOX/BMP1 supernatants and assessment of collagen synthesis and deposition.264 4. Decellularization of fibroblast-derived matrix and its use as a substrate for the growth and differentiation of mesenchymal stem cells.266 5. Conclusions.268 Acknowledgments. 269 References. 269 CHAPTER 12 Generating cell-derived matrices from human trabecular meshwork cell cultures for mechanistic studies. 271 Felix Yemanyi, Janice Vranka, VijayKrishna Raghunathan 1. Introduction.273 2. Generating CDMs from trabecular meshwork cells obtained from age-matched normal or glaucomatous human donor tissues. 275 3. Generating vehicle control- and glucocorticoid-induced CDMs from human TM cells in culture. 283 4. Crosslinking of CDMs with genipin. 286 5. Alternative methods/procedures. 290 6. Troubleshooting and
optimization.290 7. Application of CDMs in previous TM cell-ECM interaction studies. 290 8. CDMs as optimal substrates for regenerative outcomes in the conventional outflow pathways. 295 9. Summary. 296 Acknowledgments. 297 References. 297 CHAPTER 13 Methods in cell biology: Cell-derived matrices.309 Elizabeth Pavez Lorié, Petra Boukamp 1. Introduction to human skin models.310 2. Method of human fibroblast cell derived matrix.315 3. Materials, equipment and reagents.316 4. Protocols.318 5. Safety considerations and standards. 323 6. Analysis and statistics.324
Contents 7. Pros and cons.324 8. Alternative methods/procedures.325 9. Troubleshooting and optimization (for the FDM).326 10. Summary and discussion. 326 References.327 |
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| spelling | Cell-derived matrices Part A edited by David Caballero, Subhas C. Kundu, Rui Luís Reis First edition Cambridge, MA ; San Diego, CA Academic Press 2020 xvii, 332 Seiten Illustrationen, Diagramme txt rdacontent n rdamedia nc rdacarrier Methods in cell biology Volume 156 Methods in cell biology (DE-588)4143413-4 Aufsatzsammlung gnd-content Caballero, David edt Kundu, S. C. (DE-588)1208714082 edt Reis, Rui L. 1967- (DE-588)1194098916 edt (DE-604)BV046796835 A Methods in cell biology Volume 156 (DE-604)BV002534878 156 Digitalisierung UB Regensburg - ADAM Catalogue Enrichment application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=032205688&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
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