The zebrafish in biomedical research: biology, husbandry, diseases, and research applications
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| Format: | Book |
| Language: | English |
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London
Academic Press is an imprint of Elsevier
[2020]
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| Online Access: | Inhaltsverzeichnis |
| Physical Description: | xix, 698 Seiten Illustrationen |
| ISBN: | 9780128124314 |
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| adam_text | THE ZEBRAFISH IN
BIOMEDICAL
RESEARCH
Biology, Husbandry, Diseases, and
Research Applications
Edited by
Samuel C Cartner
Animal Resources Program, University of Alabama at Birmingham
Birmingham, AL, United States of America
Judith S Eisen
Institute of Neuroscience, University of Oregon
Eugene, OR, United States of America
Susan C Farmer
University of Alabama at Birmingham, Birmingham, AL, United States of America
Karen J Guillemin
Institute of Molecular Biology, University of Oregon, Eugene, OR, United States of America;
Humans and the Microbiome Program, CIFAR, Toronto, ON, Canada
Michael L Kent
Departments of Microbiology and Biomedical Sciences, Oregon State University
Corvallis, OR, United States of America
George E Sanders
Department of Comparative Medicine, University of Washington
Seattle, WA, United States of America
ACADEMIC PRESS
An imprint of Elsevier
Contents
Contributors xiii
List of reviewers xvii
Preface xix
_____________I_____________
Introduction
1 History of Zebrafish Research
JUDITH S EISEN
Setting the Stage 3
Establishing, the Zebrafish Model 5
Synthesizing Genetics and Embryology 7
Making a Big Splash 10
Developing New Tools for Molecular Analyses 10
Expanding Zebrafish Research Into New Areas 11
Conclusions 12
References 12
2 Zebrafish Taxonomy and Phylogeny or
Taxonomy and Phylogeny
BRAEDAN M MCCLUSKEY AND INGO BRAASCH
Introduction 15
The Phylogenetic Position of Zebrafish 15
Zebrafish and Related Danio Species as an Evolutionary
Model System • 17
The Zebrafish Model in an Evolutionary Context 18
Zebrafish and Its Relation to Other Fish Model
Species 19
Conclusion and Outlook 21
References 21
3 Zebrafish Genetics
JOHN H POSTLETHWAIT AND INGO BRAASCH
Introduction 25
The Zebrafish Karyotype 25
The Zebrafish Genetic Map 26
Zebrafish and the Teleost Genome Duplication 28
Zebrafish Gene Nomenclature Conventions 28
Chromosome Evolution After the Teleost Genome
Duplication 30
Gene Evolution After the Teleost Genome
Duplication 30
The Zebrafish Genome Sequence Assembly 32
; Genetics of Zebrafish Sex Determination 33
Conclusions 35
i Acknowledgments 35
j References 35
t
4 Geographic Range and Natural Distribution
CAROLE J LEE, CHARLES R TYLER AND GREGORY C PAULL
Geographic Range 41
Natural Distribution 43
Climate 46
Seasons 46
Altitudes 48
Temperatures 48
Water Conditions 49
Substrates 51
Vegetation 51
Human Impact 52
Conclusions 53
References 53
5 Behavior of Wild Populations
CAROLE J LEE, CHARLES R TYLER AND GREGORY C PAULL
Introduction 57
Life History of the Zebrafish 57
Social Behavior 59
Aggression 61
Reproductive Behavior 62
Foraging Behavior 64
Antipredatory Behavior 65
Variations in Behavior 67
Conclusions 68
References 69
________ n______
Biology
Appearance, development, anatomy,
physiology
6 Zebrafish in Biomedical Research: Head and
Body: Anatomy
GEORGE E SANDERS
Introduction 77
Conclusion 79
References 79
7 Establishing The Body Plan: The First 24 Hours
of Zebrafish Development
NATALIE L SMITH AND DAVID KIMELMAN
The Early-stage Embryo 81
Early Head Formation 84
Initial Formation of Differentiated Cell Types: Ectoderm 85
vii
viii Contents
Initial Formation of Differentiated Cell Types: Mesoderm 86
Initial Formation of Differentiated Cell Types: Endoderm 86
References 87
Tissues and organs associated with
special senses
8 Zebrafish Integumentary System
ANDREW J AMAN AND DAVID M PAR1CHY
Introduction 91
Epidermal Development and Anatomy 91
Development and Anatomy of the Hypodermis and
Collagenous Dermal Stroma 92
Development and Anatomy of Elasmoid Scales 92
Zebrafish Skin as a Model for Skin Disease, Wound
Healing and Regeneration 94
Outlook 94
Acknowledgments 94
References 94
9 Zebrafish Pigmentation
DAVID M PARICHY
Introduction 97
Stripes and Their Development 97
Scales, Fins, and Other Sites of Pigmentation 100
Physiological and Pathological Effects on Pigmentation 100
Conclusions 100
Acknowledgments 10 1
References 101
10 Respiratory System
MICHAEL G JONZ
Introduction 103
The Mechanics of Respiration 103
The Gills 103
Cutaneous Respiration 105
Indicators of Stress to the Respiratory System 105
Conclusion 106
References 106
11 Skeletal System Morphophysiology
CLAIRE J WATSON AND RONALD Y KWON
The Functions of the Skeleton are Diverse 109
Bone Develops Through Different Modes of Ossification 110
Bone Exhibits a Hierarchical Structure 110
Summary 113
Acknowledgments 113
References 113
12 Zebrafish Myology
FRANK J TULENKO AND PETER CURRIE
Embryonic Origins 115
Head Muscles 115
Trunk Muscles 118
Pectoral Fin Muscles 118
Pelvic Fin Muscles 119
Median Fin Muscles 17n
Conclusions 120
References 121
13 It Takes Guts: Development of the Embryonic
and Juvenile Zebrafish Digestive System
MORGAN PROCHASKA, JIANLONG LI AND KENNETH N WALLACE
Introduction 123
Endoderm Formation and Migration to Midline 123
Organization of the Embryonic Endoderm 123
Proliferation of the Intestinal Endoderm 124
Maturation of the Embryonic Intestinal and Esophageal
Endoderm 125
Development of Smooth Muscle and Enteric Neurons 126
Liver Development 127
Pancreas Development 128
Maturation of the Postembryonic Digestive System 128
Conclusions 129
Acknowledgments 129
References 129
14 The Zebrafish Cardiovascular System
MARINA VENERO GALANTERNIK, AMBER N STRATMAN AND
BRANT M WEINSTEIN
Introduction 131
Anatomy of the Adult Cardiovascular System 132
The Developing Cardiovascular System 134
References 139
15 Development of The Zebrafish Pronephric
and Mesonephric Kidneys
CUONG Q DIEP, NORIKO MIKEASKY AND ALAN J DAVIDSON
Introduction 145
Structure of The Pronephros and Mesonephros 145
Formation of The Pronephros 146
Formation of The Mesonephros 148
Concluding Remarks 149
References 149
16 The Reproductive System
KELLEE R SIEGFRIED AND BRUCE W DRAPER
Introduction 151
Primordial Germ Cell Specification and Migration (0—24 h
Postfertilization, hpf) 151
The Larval Bipotential/Undifferentiated
Gonad (5—25 Dpf) 152
Sex Determination and Differentiation (20—30 Dpf) 152
The Adult Gonads 153
Hormonal Regulation of Reproduction 158
Summary 161
References 161
17 Endocrine Systems
DANIEL A GORELICK AND LAUREN M HABEN1CHT
Introduction 165
Hypothalamus and Pituitary 166
Thyroid 168
Contents ix
Interrenal Cells (Adrenal Equivalent) 168
Parathyroid Hormones 169
Pineal 169
Endocrine Pancreas 170
Growth 172
Energy amp; Metabolism 173
Conclusion 174
References 174
18 Zebrafish Nervous Systems
JAN KASLIN AND JULIA GANZ
The Central Nervous System 181
The Peripheral Nervous System 185
Conclusions 187
References 187
19 Immunology
DAVID TRAVER AND JEFFREY A YODER
Introduction 191
Cellular Components of the Immune System and
Their Lineage Markers 191
Molecular Components of the Adaptive Immune
System 200
Major Histocompatibility Complex Genes 203
Toll-Like Receptors (TLRs) 204
Fish-Specific Families of Innate Immune Receptors 207
Complement System 209
Summary 210
References 210
20 Physiology: Hematology and Clinical
Chemistry, Gas Exchange, and Regulatory
Osmolality
LAUREN M HABENICHT
Introduction 217
Hematology and Clinical Chemistry 218
Gas Exchange 222
Regulatory Osmolality 226
Summary and Conclusion 231
References 231
Organ systems: development, anatomy,
physiology
21 Zebrafish in Biomedical Research: the
Retina and Vision
WHITNEY M CLEGHORN AND SUSAN E BROCKERHOFF
Introduction 237
The Organization and Function of the Zebrafish Retina
Organization 237
Function 239
Behavioral Assays 239
Physiological Assays 241
Fluorescent Strategies 241
Summary - 242
References 242
22 The Mechanosensory Lateral
Line System
ERIC D THOMAS AND DAVID W RAIBLE
Introduction _ 245,
Anatomy of the Lateral Line 245
Lateral Line Function 247
Development of the Lateral Line 247
Regenerative Capacity of the Lateral Line 249
Conclusion 250
References 251
23 Inner Ear and Hearing
ALLISON B COFFIN AND ALEXANDRIA M HUDSON
Introduction to the Auditory System 255
Otic Induction 255
Macular Development 256
Otolith Development 256
Hair Cell Development 257
VIIIth Nerve Development 257
Early Development of Hearing 257
Growth of Sensory Maculae 257
Hearing Thresholds in Adults 258
Accessory Auditory Structures 259
References 259
____________ III
Husbandry
24 Introduction to Zebrafish Husbandry
SUSAN C FARMER
References 264
25 Aquatics Facility Design Considerations:
Incorporating Aquatics into an Animal Facility
JEFFREY R ZYNDA
Introduction 265
Program Components 266
Planning Approaches 268
Housing System Types 269
Environmental Parameters , 270
Housing Room Planning and Design 271
Procedure Room Planning and Design 273
Cage/Tank Wash Planning and Design 273
Mechanical, Electrical and Plumbing System Design
Considerations 275
Special Considerations 276
Lessons Learned 277
References 277
Further Reading 277
X Contents
26 Aquatic Housing 30 Recirculating Aquaculture Systems (RAS) for
JASON COCKINGTON Zebrafish Culture
HUGH S HAMMER
Introduction to Aquatic Housing 279
Primary Enclosures (Tanks) 280 Introduction 337
Secondary Enclosure Systems 287 Racks and Tanks 338
Advanced Applications 294 Pumps and Circulation 339
Summary 297 Aeration 340
References 297 Mechanical Filtration (Solids Removal) 341
Biological Filtration 346
27 Cleaning and Disinfection of Life Systems Floating Bead Filters 350-
ERIK SANDERS Chemical Filtration and Modification of Water Quality 350
Disinfection 352
Abstract 299 Additional Apparatus 355
Recirculating Aquaculture Systems (RAS) Components Acknowledgments 355
Overview 300 References 355
Types of Soils and Dirt Found in and on RAS Equipment 301
Cleaning Agents and Techniques used in 31 Zebrafish Breeding and Colony Management
Aquatics Facilities 304 DANIEL CASTRANOVA AND CHONGMIN WANG
Cleaning Validation Techniques 307
Conclusions 307 Introduction 357
Further Reading 307 Spawning and the Sexes 357
Laboratory Spawning 359
28 Zebrafish Aquatic Systems: Preventative In Vitro Fertilization 360
Maintenance and Troubleshooting Cryopreservation 361
LAUREN PANDOLFO AND JOHN ALIUCCI Colony Management 362
References 363
Preventative Maintenance 309
Record Keeping 310 32 Zebrafish Larviculture
Redundancy 310 CHRISTIAN LAWRENCE
Monitoring 311
Prioritization of Maintenance 311 Introduction 365
Fault Tolerances 311 Natural History/Biology of Larvae 365
Monitoring of Specific Devices and Subsystems 312 Feeding 366
Pump Speeds, Water Flow, Water Change Cycles 312 Water Quality 370
Biological Filtration Maintenance 312 Epigenetic Factors 372
Degassing Device 313 Methodology 372
Mechanical Filtration Maintenance 313 Future Directions 373
Biological Filtration 314 Conclusion 374
Ultraviolet Lamps 314 References 374
System Water Generation 315
Pump/Motor Monitoring 315 33 Zebrafish Nutrition—Moving Forward
Automation 316 L ADELE FOWLER MICHAEL B WILLIAMS LOUIS R D’ABRAMO AND
Troubleshooting or Diagnosing Nonnormal Events 316 STEPHEN A WATTS
References 320
Introduction 379
29 Water Quality For Zebrafish Culture Nutrients 379
HUGH S HAMMER Nonnutritive Components 386
Live Diets 391
Introduction 321 Formulated Diets: Classification and Use 392
Making Water For Controlled Aquatic Environments 322 Feed Management 393
Water Quality For Zebrafish Culture 324 Diet-microbiome Interactions 394
Conclusion 334 Conclusions 395
References 334 Acknowledgments 396
Further Reading 335 References 396
Contents xi
34 Anesthesia, Analgesia, and Euthanasia of the
Laboratory Zebrafish
CHEREEN COLLYMORE
Anesthesia 403
Analgesia 409
Euthanasia 410
Conclusion 412
References 412
35 Health Surveillance Programs
CHRISTINE LIEGGI
Introduction 415
Development of a Health Surveillance Program 416
Selection of Agents 417
Testing Frequency 417
Health Surveillance Sampling Sources 419
Live Animals 419
Sentinel Fish 420
Colony Fish 421
Embryos 422
Environmental Samples 422
Testing Methods 423
Health Report 424
Disease Prevention 424
References 427
Further reading 429
36 Importation and Quarantine
CHRISTINE LIEGGI
Introduction 431
Importation Request and Approval 431
Receipt 432
Quarantine Goals 434
General Quarantine Practices 434
Quarantine Strategies 435
Environmental Testing 437
Embryo Surface Disinfection 437
Quarantine Facility Design 439
Facility Workflow 440
References 441
37 Export and Transportation of Zebrafish
CARRIE L BARTON, DIANA P BAUMANN AND JAMES D COX
Documentation 443
Health Certificate 444
Transportation 446
References 450
38 Regulations, Policies and Guidelines
Pertaining to the Use of Zebrafish in
Biomedical Research
SAMUEL C CARTNER, EARLE DURBORAW AND AMANDA WATTS
Introduction 451
Laws, Policies, and Guidelines 451
Institutional Responsibilities for Zebrafish Oversight 454
Specific Challenges for Oversight of Zebrafish Research 456
Acknowledgment 458
References 458
____________ IV_________ ___
Diseases
39 Water Quality and Idiopathic Diseases of
Laboratory Zebrafish
KATRINA N MURRAY, DAVID LAINS AND SEAN T SPAGNOLI
Introduction 463
Diseases of Water Quality 463
Idiopathic Diseases 468
References 474
40 Important Parasites of Zebrafish in
Research Facilities
MICHAEL L KENT AND JUSTIN L SANDERS
Microsporidia 479
References 492
Further Reading 494
41 Bacterial and Fungal Diseases of Zebrafish
CHRISTOPHER M WHIPPS AND MICHAEL L KENT
Introduction 495
Bacterial Diseases 496
Water Molds and Mycotic Diseases 504
References 505
42 Viral Diseases
MARCUS J CRIM
Introduction 509
Naturally Occurring Oiral Infections 510
Endogenous Viral Elements 518
Experimental Susceptibility to Viral Infections 519
Conclusions 521
References 522
43 Nonexperimentally Induced Neoplastic and
Proliferative Lesions in Laboratory Zebrafish
SEAN T SPAGNOLI AND KATRINA N MURRAY
Introduction 527
Seminomas 528
Intestinal Carcinomas 531
References 545
44- Special Procedures for Zebrafish Diagnostics
MICHAEL L KENT, KATRINA N MURRAY, KAY FISCHER, CHRISTIANA
LOHR, DONNA MULROONEY AND JUSTIN L SANDERS
Environmental Samples 547
Clinical examination 547
Selecting Fish for Diagnostic Evaluation 547
xii Contents
External Examination and Gross Necropsy 548
Histopathology 549
Immunohistochemistry and Diagnostic Antibodies 550
Bacteriology 551
Bacteriology With Histopathology 552
Virology 552
Molecular Diagnositic Tests 552
Nonlethal Testing 553
Treatment 554
Treatments Delivered in Water 554
Oral Treatments 554
References 554
Further reading 556
V
Scientific Research
45 Zebrafish as a Model to Understand Vertebrate
Development
NARENDRA H PATHAK AND MICHAEL J F BARRESI
Introduction to Embryology 559
The Emergence of Zebrafish as a Versatile Vertebrate
Model System to Understand Embryology 560
Zebrafish Research Advances Our Understanding of the
Mechanisms Governing Development 561
Summary 582
References 582
46 Zebrafish as a Model for Revealing the
Neuronal Basis of Behavior
KIMBERLY L MCARTHUR, DAWNIS M CHOW AND
JOSEPH R FETCHO
Introduction 593
Vertebrate Brains Have Much in Common Across Species 593
The Challenge of Understanding How Brains Generate
Behavior 593
A History of Zebrafish as a Model for Understanding the
Generation of Behavior 595
Advantages and Disadvantages of Zebrafish Compared to
Other Model Organisms for the Study of the Neural
Basis of Behavior ■ 601
Major Avenues of Investigation in Zebrafish With a
Couple of Case Studies 603
The Future for Zebrafish in Studies of the Neuronal
Basis of Behavior 609
References 611
47 Zebrafish as a Model to Understand Human
Genetic Diseases
JENNIFER B PHILLIPS AND MONTE WESTERFIELD
Zebrafish Versus Human: How Similar are They? 619
An Expanding TooUsfefbr Generating Zebrafish
Models of Human Genetic Disease 620
Disease Models: What Genes do we
Choose to Target? 623
Acknowledgments 624
References 624
48 Zebrafish as a Model for Investigating -
Animal—Microbe Interactions
TRAVIS J WILES AND KAREN J GUILLEMIN
Introduction 627
The Zebrafish: An Adaptable and Multifaceted
Model Organism 627
The Zebrafish: Forging and Overturning Paradigms in
Animal—Microbe Interaction Research 631
Outlook 632
References 632
49 Targeted Editing of Zebrafish Genes to
Understand Gene Function and Human
Disease Pathology
ALBERTO RISSONE, JOHAN LEDIN AND SHAWN M BURGESS
Background 637
Transient Methods for Altering Gene Expression 638
Techniques for Genome Editing 640
Sequence Integration 644
Conclusions 645
References 645
50 Zebrafish as a Platform for Genetic Screening
JAMES T NICHOLS
Introduction and History 649
Mutagenesis x 650
Recovery 651
Phenotyping 653
Genotyping 653
Validation 655
Characterization 655
Concluding Remarks 656
References 656
51 Zebrafish as a Platform for Drug Screening
TEJIA ZHANG AND RANDALL T PETERSON
Introduction 659
Zebrafish Chemical Screening, a Statistical Overview 659
Zebrafish Chemical Screens by Category 662
Clinical Implications 667
Limitations and Potential Solutions 667
Conclusion 669
References 670
Index 677
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| illustrated | Illustrated |
| indexdate | 2024-07-10T08:39:48Z |
| institution | BVB |
| isbn | 9780128124314 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-031637222 |
| oclc_num | 1139568741 |
| open_access_boolean | |
| owner | DE-11 |
| owner_facet | DE-11 |
| physical | xix, 698 Seiten Illustrationen |
| publishDate | 2020 |
| publishDateSearch | 2020 |
| publishDateSort | 2020 |
| publisher | Academic Press is an imprint of Elsevier |
| record_format | marc |
| spelling | The zebrafish in biomedical research biology, husbandry, diseases, and research applications edited by Samual C. Cartner [und 5 weitere] London Academic Press is an imprint of Elsevier [2020] xix, 698 Seiten Illustrationen txt rdacontent n rdamedia nc rdacarrier Entwicklungsbiologie (DE-588)4152440-8 gnd rswk-swf Zebrabärbling (DE-588)4079468-4 gnd rswk-swf Modellorganismus (DE-588)1028601360 gnd rswk-swf Biomedizin (DE-588)4647152-2 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Zebrabärbling (DE-588)4079468-4 s Modellorganismus (DE-588)1028601360 s Biomedizin (DE-588)4647152-2 s Entwicklungsbiologie (DE-588)4152440-8 s DE-604 Cartner, Samual C. (DE-588)1206601744 edt HEBIS Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=031637222&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | The zebrafish in biomedical research biology, husbandry, diseases, and research applications Entwicklungsbiologie (DE-588)4152440-8 gnd Zebrabärbling (DE-588)4079468-4 gnd Modellorganismus (DE-588)1028601360 gnd Biomedizin (DE-588)4647152-2 gnd |
| subject_GND | (DE-588)4152440-8 (DE-588)4079468-4 (DE-588)1028601360 (DE-588)4647152-2 (DE-588)4143413-4 |
| title | The zebrafish in biomedical research biology, husbandry, diseases, and research applications |
| title_auth | The zebrafish in biomedical research biology, husbandry, diseases, and research applications |
| title_exact_search | The zebrafish in biomedical research biology, husbandry, diseases, and research applications |
| title_full | The zebrafish in biomedical research biology, husbandry, diseases, and research applications edited by Samual C. Cartner [und 5 weitere] |
| title_fullStr | The zebrafish in biomedical research biology, husbandry, diseases, and research applications edited by Samual C. Cartner [und 5 weitere] |
| title_full_unstemmed | The zebrafish in biomedical research biology, husbandry, diseases, and research applications edited by Samual C. Cartner [und 5 weitere] |
| title_short | The zebrafish in biomedical research |
| title_sort | the zebrafish in biomedical research biology husbandry diseases and research applications |
| title_sub | biology, husbandry, diseases, and research applications |
| topic | Entwicklungsbiologie (DE-588)4152440-8 gnd Zebrabärbling (DE-588)4079468-4 gnd Modellorganismus (DE-588)1028601360 gnd Biomedizin (DE-588)4647152-2 gnd |
| topic_facet | Entwicklungsbiologie Zebrabärbling Modellorganismus Biomedizin Aufsatzsammlung |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=031637222&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| work_keys_str_mv | AT cartnersamualc thezebrafishinbiomedicalresearchbiologyhusbandrydiseasesandresearchapplications |