Advanced techniques for studying microorganisms in extreme environments:
Gespeichert in:
| Weitere Verfasser: | |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Berlin
De Gruyter
[2019]
|
| Schriftenreihe: | Life in extreme environments
Volume 8 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | xiv, 165 Seiten Illustrationen |
| ISBN: | 9783110524642 |
Internformat
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| 245 | 1 | 0 | |a Advanced techniques for studying microorganisms in extreme environments |c edited by Étienne Yergeau |
| 264 | 1 | |a Berlin |b De Gruyter |c [2019] | |
| 300 | |a xiv, 165 Seiten |b Illustrationen | ||
| 336 | |b txt |2 rdacontent | ||
| 337 | |b n |2 rdamedia | ||
| 338 | |b nc |2 rdacarrier | ||
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| 653 | |a genomics | ||
| 653 | |a molecular biology | ||
| 653 | |a extremophiles | ||
| 653 | |a environmental microbiology | ||
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| 700 | 1 | |a Yergeau, Étienne |0 (DE-588)1200374576 |4 edt | |
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Datensatz im Suchindex
| _version_ | 1804180322103853056 |
|---|---|
| adam_text | CONTENTS
PREFACE
*
V
CONTRIBUTING
AUTHORS
*
XIII
1
EVANGELOS
MARCOLEFAS,
LANINA
ALTSHULER
AND
LYLE
G.
WHYTE
ADVANCED
MICROBIAL
CULTIVATION
METHODOLOGIES
AND
THEIR
1.1
1.2
13
1.4
1.5
1.6
1.7
1.8
1.9
1.10
1.11
APPLICABILITY
IN
CRYOENVIRONMENTS
*
1
INTRODUCTION
-----
1
DIFFUSION
CHAMBER
-----
3
MICROBIAL
TRAP
----
7
ISOLATION
CHIP
----
8
MICRO-PETRI
DISH
*
10
HOLLOW-FIBER
MEMBRANE
CHAMBER
*
11
GEL
MICRODROPLETS
-----
13
IN
SITU
CULTIVATION
TIP
(L-TIP)
-----
14
SOIL SUBSTRATE
MEMBRANE
SYSTEM
*
14
APPLICABILITY
IN
CRYOENVIRONMENTS
-----
16
CONCLUDING
REMARKS
*
18
REFERENCES
*
18
2
2.1
2.1.1
2.1.2
2.1.3
2.2
2.2.1
2.2.2
2.2.3
2.2.4
2.2.5
YONG-HOE
CHOE
AND
YOO
KYUNG
LEE
ANALYSIS
OF
LITHIC
MICROBIAL
COMMUNITIES
*
23
INTRODUCTION
-----
23
LITHIC
HABITATS
AND
THEIR
GEOLOGY
*
23
DISTRIBUTION
AND
DIVERSITY
OF
LITHIC
MICROORGANISMS
*
24
TRADITIONAL
APPROACHES
TO
ASSESS
LITHIC
MICROBIAL
COMMUNITY
-----24
ANALYSIS
METHODS
FOR
LITHIC
MICROBIAL
COMMUNITY
*
25
ROCK
SAMPLING
-----
25
X-RAY
FLUORESCENCE
SPECTROMETRY
(XRF)
ANALYSIS
*
25
INDUCTIVELY
COUPLED
PLASMA-MASS-SPECTROMETER
*
26
MERCURY
INTRUSION
POROSIMETRY
(MIP)
*
26
PORE
STRUCTURE
ANALYSIS
BY
X-RAY
MICROFOCUSED
COMPUTED
TOMOGRAPHY
(X-RAY
P-CT)
-----26
2.2.6
2.2.7
2.3
PCR
AMPLIFICATION
AND
SEQUENCING
*
26
STATISTICAL
ANALYSIS
*
27
CONCLUDING
REMARKS
-----
28
REFERENCES
*
28
X
*
CONTENTS
JUNIA
SCHULTZ
AND
ALEXANDRE
SOARES
ROSADO
3
USE
OF
MICROBES
FROM
EXTREME
ENVIRONMENTS
FOR
BIOTECHNOLOGICAL
APPLICATIONS
-----
33
3.1
INTRODUCTION
-----
33
3.2
EXTREMOPHILIC
MICROBE
POTENTIAL:
THE
SEARCH
FOR
BIOPRODUCTS
AND
THEIR
BIOTECHNOLOGICAL
APPLICATIONS
*
35
3.2.1
THERMOPHILES
AND
HYPERTHERMOPHILES
*
35
3.2.2
PSYCHROPHILES
-----
37
3.2.3
ACIDOPHILES
---- 39
3.2.4
ALKALIPHILES
----
40
3.2.5
PIEZOPHILES
----
41
3.2.6
RADIORESISTANTS
-----
42
3.3
APPROACHES
AND
NEW
TRENDS
*
44
3.4
CONCLUSIONS
-----
47
REFERENCES
*
48
MIA
M.
HOWARD,
LAURA
M.
KAMINSKY,
ANDRE
KESSLER
AND
TERRENCE
H.
BELL
4
MERGING
MICROBIAL
AND
PLANT
PROFILING
TO
UNDERSTAND
THE
IMPACT
OF
HUMAN-GENERATED
EXTREME
ENVIRONMENTS
ON
NATURAL
AND
AGRICULTURAL
SYSTEMS
*
57
4.1
GENERATION
OF
EXTREME
ENVIRONMENTS
THROUGH
HUMAN
ACTIVITY
*
57
4.1.1
EXAMPLES
OF
HUMAN
DISTURBANCE
TO
PLANT
SYSTEMS
*
58
4.1.2
MICROBES
AFFECT
PLANT
COMMUNITIES
AND
PHENOTYPES
*
65
4.1.3
PLANT
BREEDING
AND
PLANT-MICROBE
RELATIONSHIPS
*
66
4.2
CONSIDERATIONS
FOR
STUDYING
PLANT-MICROBE
INTERACTIONS
IN
HUMAN-ALTERED
HABITATS
*
67
4.2.1
SURVEYS
ALONG
ARTIFICIAL
OR
NATURAL
GRADIENTS
OF
DISTURBANCE
*
68
4.2.2
TARGETED
MANIPULATIVE
EXPERIMENTS
*
69
4.2.3
TECHNIQUES
FOR
ASSESSING
SOIL
MICROBIAL
COMMUNITIES
AND
PLANT
PHENOTYPES
IN
THE
FIELD
*
70
4.2.4
EXAMINING
THE
EFFECTS
OF
SOIL
MICROBIAL
SHIFTS
THROUGH
MICROBIOME
TRANSPLANT
EXPERIMENTS
*
73
4.3
ANALYSIS
OF
PLANTS
AND
ASSOCIATED
MICROBIOMES
*
78
4.3.1
PROFILING
PLANT-ASSOCIATED
MICROBIOMES
*
78
4.3.2
PROFILING
PLANT PHENOTYPES
-----
79
4.4
CONCLUDING
REMARKS
-----
82
REFERENCES
*
82
CONTENTS
*
XI
DON
COWAN,
EVELIEN
ADRIAENSSENS,
PIETER
DE
MAAYER,
PEDRO
LEBRE,
THULANI
MAKHALANYANE,
JEAN-BAPTISTE
RAMOND,
MARLA
TRINDADE,
ANGEL
VALVERDE
AND
SURENDRA
VIKRAM
5
METAGENOMICS
OF
EXTREME
ENVIRONMENTS:
METHODS
AND
APPLICATIONS
*
93
5.1
INTRODUCTION
-----
93
5.2
METAGENOMIC
DNA
EXTRACTION
--- 94
5.2.1
DIRECT
MDNA
EXTRACTIONS
IN
EXTREME
ENVIRONMENTS
-----
94
5.2.2
INDIRECT
MDNA
EXTRACTIONS
-------
97
5.3
MICROBIAL
DIVERSITY
ANALYSIS:
PHYLOGENETICS
-----
97
5.3.1
UPSTREAM
ANALYSIS
*
98
5.3.2
DIVERSITY
ANALYSIS
*
100
5.3.3
SOFTWARE
-----
102
5.4
METAVIROMICS
*
103
5.4.1
VIRAL-LIKE
PARTICLE
EXTRACTION
OR
ENRICHMENT
*
103
5.4.2
NUCLEASE
TREATMENT
*
104
5.4.3
NUCLEIC
ACID
EXTRACTION
AND
AMPLIFICATION
*
104
5.5
DE
NOVO
METAGENOME
ASSEMBLY
(THE
GENOME-CENTRIC
APPROACH)
*
104
5.6
EXPLORING
THE
FUNCTIONAL
ECOLOGY
OF
METAGENOMES
*
106
5.6.1
THE
USE
OF
BIOINFORMATICS
PIPELINES
FOR
PREDICTING
FUNCTIONAL
CAPACITY
*
106
5.6.2
APPLICATION
OF
GENE-BASED
MICROARRAYS
TO
FUNCTIONAL
ECOLOGY
*
109
5.7
APPLIED
(FUNCTIONAL)
METAGENOMICS
*
111
5.7.1
SAMPLE
SELECTION
*
111
5.7.2
METAGENOMIC
LIBRARY
CONSTRUCTION
*
112
5.7.3
EXPRESSION
HOSTS
*
113
5.7.4
ACTIVITY
ASSAYS
*
113
5.8 CONCLUSIONS
AND
PERSPECTIVES
*
115
REFERENCES
*
116
JULIEN
TREMBLAY
6
PRACTICAL
OVERVIEW
OF
BIOINFORMATICS
DATA
MINING
IN
ENVIRONMENTAL
GENOMICS
*
127
6.1
INTRODUCTION
-----
127
6.2
DATA
TYPES
*
129
6.3
EXPERIMENTAL
DESIGN
*
129
6.4
SHORT
RRNA
GENE
AMPLICONS
*
131
6.5
METAGENOMIC
SHOTGUN
SEQUENCING
*
138
6.6
METATRANSCRIPTOMIC
SHOTGUN
SEQUENCING
*
141
6.7
ADDITIONAL
NOTES
-----
143
6.7.1
CHALLENGES
OF
ANNOTATION
*
143
6.7.2
PIPELINE
WRAPPER
*
143
6.8
FUTURE
DIRECTIONS
*
144
REFERENCES
*
144
XII
*
CONTENTS
7
7.1
7.2
7.3
7.3.1
7.3.2
7.3.3
7.3.4
7.4
ITUMELENG
MOROENYANE
AND
ETIENNE
YERGEAU
TECHNIQUES
AND
APPROACHES
TO
QUANTIFY
MICROBIAL
DIVERSITY
IN
EXTREME
ENVIRONMENTS
*
151
SUMMARY
-----
151
INTRODUCTION
-----
151
CURRENT
APPROACHES
USED
TO
QUANTIFY
SOIL
MICROBIAL
DIVERSITY
IN
EXTREME
ENVIRONMENTS
-----
155
MICROBIAL
MOLECULAR
GENETIC
MARKERS
*
155
MEASURING
LOCAL
SPECIES
POOLS
AND
TURNOVER
RATES
ACROSS
SITES
*
156
MEASURING
FUNCTIONAL
PROFILES
AND
MICROBIAL
INTERACTIONS
*
158
PHYLOGENETIC
DIVERSITY
AND
INFERENCE
IN
EXTREME
SOILS
*
160
CONCLUSION
-----
161
REFERENCES
*
161
INDEX
-----
167
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| genre | (DE-588)4143413-4 Aufsatzsammlung gnd-content |
| genre_facet | Aufsatzsammlung |
| id | DE-604.BV046053255 |
| illustrated | Illustrated |
| indexdate | 2024-07-10T08:33:55Z |
| institution | BVB |
| isbn | 9783110524642 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-031434732 |
| oclc_num | 1128845157 |
| open_access_boolean | |
| owner | DE-11 DE-355 DE-BY-UBR DE-703 |
| owner_facet | DE-11 DE-355 DE-BY-UBR DE-703 |
| physical | xiv, 165 Seiten Illustrationen |
| publishDate | 2019 |
| publishDateSearch | 2019 |
| publishDateSort | 2019 |
| publisher | De Gruyter |
| record_format | marc |
| series | Life in extreme environments |
| series2 | Life in extreme environments |
| spelling | Advanced techniques for studying microorganisms in extreme environments edited by Étienne Yergeau Berlin De Gruyter [2019] xiv, 165 Seiten Illustrationen txt rdacontent n rdamedia nc rdacarrier Life in extreme environments Volume 8 Extremophiler Mikroorganismus (DE-588)4332438-1 gnd rswk-swf Methode (DE-588)4038971-6 gnd rswk-swf genomics molecular biology extremophiles environmental microbiology (DE-588)4143413-4 Aufsatzsammlung gnd-content Extremophiler Mikroorganismus (DE-588)4332438-1 s Methode (DE-588)4038971-6 s DE-604 Yergeau, Étienne (DE-588)1200374576 edt Erscheint auch als Online-Ausgabe, PDF 978-3-11-052578-6 Erscheint auch als Online-Ausgabe, EPUB 978-3-11-052536-6 Life in extreme environments Volume 8 (DE-604)BV041795526 8 DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=031434732&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Advanced techniques for studying microorganisms in extreme environments Life in extreme environments Extremophiler Mikroorganismus (DE-588)4332438-1 gnd Methode (DE-588)4038971-6 gnd |
| subject_GND | (DE-588)4332438-1 (DE-588)4038971-6 (DE-588)4143413-4 |
| title | Advanced techniques for studying microorganisms in extreme environments |
| title_auth | Advanced techniques for studying microorganisms in extreme environments |
| title_exact_search | Advanced techniques for studying microorganisms in extreme environments |
| title_full | Advanced techniques for studying microorganisms in extreme environments edited by Étienne Yergeau |
| title_fullStr | Advanced techniques for studying microorganisms in extreme environments edited by Étienne Yergeau |
| title_full_unstemmed | Advanced techniques for studying microorganisms in extreme environments edited by Étienne Yergeau |
| title_short | Advanced techniques for studying microorganisms in extreme environments |
| title_sort | advanced techniques for studying microorganisms in extreme environments |
| topic | Extremophiler Mikroorganismus (DE-588)4332438-1 gnd Methode (DE-588)4038971-6 gnd |
| topic_facet | Extremophiler Mikroorganismus Methode Aufsatzsammlung |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=031434732&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV041795526 |
| work_keys_str_mv | AT yergeauetienne advancedtechniquesforstudyingmicroorganismsinextremeenvironments |