Serum/plasma proteomics: methods and protocols
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| Other Authors: | , |
|---|---|
| Format: | Book |
| Language: | English |
| Published: |
New York, NY
Humana Press
[2017]
|
| Edition: | Second edition |
| Series: | Methods in molecular biology
1619 |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Physical Description: | xvi, 551 Seiten Illustrationen, Diagramme 27 cm |
| ISBN: | 9781493970568 |
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MARC
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| 245 | 1 | 0 | |a Serum/plasma proteomics |b methods and protocols |c ed. by Richard J. Simpson and David W. Greening |
| 250 | |a Second edition | ||
| 264 | 1 | |a New York, NY |b Humana Press |c [2017] | |
| 264 | 4 | |c © 2017 | |
| 300 | |a xvi, 551 Seiten |b Illustrationen, Diagramme |c 27 cm | ||
| 336 | |b txt |2 rdacontent | ||
| 337 | |b n |2 rdamedia | ||
| 338 | |b nc |2 rdacarrier | ||
| 490 | 1 | |a Methods in molecular biology |v 1619 | |
| 490 | 0 | |a Springer protocols | |
| 505 | 8 | |a Includes bibliographical references and index | |
| 650 | 4 | |a Serum | |
| 650 | 4 | |a Blood plasma | |
| 650 | 4 | |a Proteomics | |
| 650 | 4 | |a Serum | |
| 650 | 4 | |a Plasma | |
| 650 | 4 | |a Blood Proteins | |
| 650 | 4 | |a Proteomics / methods | |
| 700 | 1 | |a Greening, David W. |4 edt | |
| 700 | 1 | |a Simpson, Richard J. |4 edt | |
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Record in the Search Index
| _version_ | 1804177738077044736 |
|---|---|
| adam_text | Titel: Serum/Plasma proteomics
Autor: Greening, David W
Jahr: 2017
Contents
Preface............................................................... x
Contributors........................................................ xt
Part I Updated Blood Processing and Handling Strategies
1 Direct Assessment of Plasma/Serum Sample Quality for
Proteomics Biomarker Investigation................................. 3
Viviana Greco, Cristian Piras, Luisa Pieroni, and Andrea Urbani
2 A Protocol for the Preparation of Cryoprecipitate and Cryo-depleted Plasma
for Proteomic Studies............................................ 23
Rosemary L. Sparrow, Richard J. Simpson, and David W. Greening
3 Preparation of Platelet Concentrates for Research and Transfusion Purposes ... 31
David W. Greening, Richard J. Simpson, and Rosemary L. Sparrow
Part II Updated Fractionation Strategies for In-depth
Blood Proteome Analysis
4 Bead-Based and Multiplexed Immunoassays for Protein
Profiling via Sequential Affinity Capture.............................. 45
Elin Birgersson, Jochen M. Schwenk, and Burcu Ayoglu
5 Affinity Proteomics for Fast, Sensitive, Quantitative Analysis of
Proteins in Plasma............................................... 55
John P. O Grady, Kevin W. Meyer, and Derrick N. Poe
6 Characterization of the Low-Molecular-Weight Human
Plasma Peptidome............................................... 63
David W. Greening and Richard J. Simpson
7 In-Depth, Reproducible Analysis of Human Plasma
Using IgY 14 and SuperMix Immunodepletion......................... 81
Lynn A. Beer, Bonnie Ky, Kurt T. Barnhart, and David W. Speicher
8 Low-Molecular-Weight Plasma Proteome Analysis Using Top-Down Mass
Spectrometry.................................................. 103
Dong Huey Cheon, Eun Gyeong Yang, Cheolju Lee, and Ji Eun Lee
9 Identification of Post-Translational Modifications from Serum/Plasma by
Immunoaffinity Enrichment and LC-MS/MS Analysis Without Depletion
of Abundant Proteins............................................ 119
Hongbo Gu, Jianmin Ren, Xiaoying Jia, and Matthew P. Stokes
10 Identification of Core-Fucosylated Glycoproteome in Human Plasma........ 127
Qichen Cao, Qing Zhao, Xiaohong Qian, and Wantao Ying
vii
viii Contents
Part III Updated Proteome Analysis of Blood Cell Components,
Vesicles, and Blood-related Fluids
11 Proteomic Analysis of Blood Extracellular Vesicles in Cardiovascular
Disease by LC-MS/MS Analysis.................................... 141
Montserrat Baldan-Martin, Fernando de la Cuesta, Gloria Alvarez-Llamas,
Gema Ruiz-Hurtado, Luis M. Ruilope, and Maria G. Barderas
12 Targeted Approach for Proteomic Analysis of a Hidden
Membrane Protein.............................................. 151
Tania Martins-Marques, Sandra I. Anjo, Teresa Ribeiro-Rodrigues,
Bruno Manadas, and Henrique Girao
13 Red Blood Cells in Clinical Proteomics............................... 173
Ana Sofia Carvalho, Manuel S. Rodriguez, and Rune Matthiesen
14 High-Throughput Quantitative Lipidomics Analysis of
Nonesterified Fatty Acids in Plasma by LC-MS......................... 183
Nicolas Christinat, Delphine Morin-Rivron, and Mojgan Masoodi
15 Simultaneous Enrichment of Plasma Extracellular Vesicles
and Glycoproteome for Studying Disease Biomarkers.................... 193
Sunil S. Adav and Siu Kwan Sze
16 Lipidomics of Human Blood Plasma by High-Resolution Shotgun Mass
Spectrometry.................................................. 203
Susanne Sales, Oskar Knittelfelder, and Andrej Shevchenko
17 Proteomics Analysis of Circulating Serum Exosomes..................... 213
Antonius Roller, Purvi Patel, Jenny Kim Kim, and Emily I. Chen
Part IV Antibody-based Discovery and Targeted Proteomics
18 High-Density Serum/Plasma Reverse Phase Protein Arrays................ 229
Cecilia Hellstrom, Tea Dodig-Crnkovic, Mun-Gwan Hong,
Jochen M. Schwenk, Peter Nilsson, and Ronald Sjoberg
19 Antibody Colocalization Microarray for Cross-Reactivity-Free
Multiplexed Protein Analysis....................................... 239
Veronique Laforte, Pik-Shan Lo, Huiyan Li, and David Juncker
20 Surface Profiling of Extracellular Vesicles from Plasma or Ascites
Fluid Using DotScan Antibody Microarrays........................... 263
Larissa Belov, Susannah Hallal, Kieran Matic, Jerry Zhou,
Sandra Wissmueller, Nuzhat Ahmed, Sumaiya Tanjil, Stephen P. Mulligan,
O. Giles Best, Richard J. Simpson, and Richard I. Christopherson
21 Serum Profiling for Identification of Autoantibody
Signatures in Diseases Using Protein Microarrays....................... 303
Shabarni Gupta, K.P. Manubhai, Shuvolina Mukherjee,
and Sanjeeva Srivastava
Contents ix
Part V Developments in Discovery and Targeted Proteomics
22 Quantitative Comparisons of Large Numbers of Human
Plasma Samples Using TMTlOplex Labeling........................... 319
Pengyuan Liu, Lynn A. Beer, Bonnie Ky, Kurt T. Barnhart,
and David W. Speicher
23 Efficient Quantitative Comparisons of Plasma Proteomes
Using Label-Free Analysis with MaxQuant............................ 339
Lynn A. Beer, Pengyuan Liu, Bonnie Ky, Kurt T. Barnhart,
and David W. Speicher
24 Blood and Plasma Proteomics: Targeted Quantitation and Posttranslational
Redox Modifications............................................. 353
Julie A. Reisz, Katelyn M. Chessler, Monika Dzieciatkowska,
Angelo D Alessandro, and Kirk C. Hansen
25 SWATH Mass Spectrometry for Proteomics of Non-Depleted Plasma........ 373
Christoph Krisp and Mark P. Molloy
26 Shotgun and Targeted Plasma Proteomics to Predict Prognosis
of Non-Small Cell Lung Cancer.................................... 385
Qing-Run Li, Yan-Sheng Liu, and Rong Zeng
27 High-Throughput Parallel Proteomic Sample Preparation Using 96-Well
Polyvinylidene Fluoride (PVDF) Membranes and C18 Purification Plates..... 395
Tue Bjerg Bennike and Hanno Steen
28 Targeted Quantification of the Glycated Peptides of Human
Serum Albumin................................................. 403
Garikapati Vannurustvamy, Arvind M. Korwar,
Mashanipalya G. Jagadeeshaprasad, and Mahesh J. Kulkarni
29 Absolute Quantification of Middle- to High-Abundant
Plasma Proteins via Targeted Proteomics.............................. 417
Julia Dittrich and Uta Ceglarek
Part VI Developments in Biomarker Discovery
30 A Highly Automated Shotgun Proteomic Workflow:
Clinical Scale and Robustness for Biomarker Discovery in Blood............ 433
Loi c Dayon, Antonio Nunez Galindo, Ornella Cominetti,
John Corthesy, and Martin Kussmann
31 Mass Spectrometry-Based Serum Proteomics for Biomarker
Discovery and Validation.......................................... 451
Santosh D. Bhosale, Robert Moulder, Petri Kouvonen,
Riitta Lahesmaa, and David R. Goodlett
32 Metabolomics Toward Biomarker Discovery........................... 467
Peiyuan Yin and Guowang Xu
33 Plasma Biomarker Identification and Quantification by
Microparticle Proteomics......................................... 477
Michal Harel and Tamar Geiger
X
Contents
34 Bronchoalveolar Lavage: Quantitative Mass Spectrometry-Based
Proteomics Analysis in Lung Diseases................................ 487
Ana Sofia Carvalho and Rune Matthiesen
35 Protein Multiplexed Immunoassay Analysis with R...................... 495
Edmond J. Breen
Appendix A Standard Operating Procedures for Plasma
Collection in Clinical Research......................................... 539
Appendix B Standard Operating Procedures for Serum Collection in
Clinical Research................................................... 543
Appendix C Reference Ranges for Blood Tests Are Sorted by
Mass and Molarity.................................................. 547
Index............................................................ 549
|
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| id | DE-604.BV044433825 |
| illustrated | Illustrated |
| indexdate | 2024-07-10T07:52:51Z |
| institution | BVB |
| isbn | 9781493970568 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-029835171 |
| oclc_num | 1001314898 |
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| owner | DE-11 |
| owner_facet | DE-11 |
| physical | xvi, 551 Seiten Illustrationen, Diagramme 27 cm |
| publishDate | 2017 |
| publishDateSearch | 2017 |
| publishDateSort | 2017 |
| publisher | Humana Press |
| record_format | marc |
| series | Methods in molecular biology |
| series2 | Methods in molecular biology Springer protocols |
| spelling | Serum/plasma proteomics methods and protocols ed. by Richard J. Simpson and David W. Greening Second edition New York, NY Humana Press [2017] © 2017 xvi, 551 Seiten Illustrationen, Diagramme 27 cm txt rdacontent n rdamedia nc rdacarrier Methods in molecular biology 1619 Springer protocols Includes bibliographical references and index Serum Blood plasma Proteomics Plasma Blood Proteins Proteomics / methods Greening, David W. edt Simpson, Richard J. edt Erscheint auch als Onlimne Ausgabe, eBook 978-1-4939-7057-5 Methods in molecular biology 1619 (DE-604)BV035362695 1619 HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=029835171&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Serum/plasma proteomics methods and protocols Methods in molecular biology Includes bibliographical references and index Serum Blood plasma Proteomics Plasma Blood Proteins Proteomics / methods |
| title | Serum/plasma proteomics methods and protocols |
| title_auth | Serum/plasma proteomics methods and protocols |
| title_exact_search | Serum/plasma proteomics methods and protocols |
| title_full | Serum/plasma proteomics methods and protocols ed. by Richard J. Simpson and David W. Greening |
| title_fullStr | Serum/plasma proteomics methods and protocols ed. by Richard J. Simpson and David W. Greening |
| title_full_unstemmed | Serum/plasma proteomics methods and protocols ed. by Richard J. Simpson and David W. Greening |
| title_short | Serum/plasma proteomics |
| title_sort | serum plasma proteomics methods and protocols |
| title_sub | methods and protocols |
| topic | Serum Blood plasma Proteomics Plasma Blood Proteins Proteomics / methods |
| topic_facet | Serum Blood plasma Proteomics Plasma Blood Proteins Proteomics / methods |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=029835171&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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