Plant gene regulatory networks: methods and protocols
Saved in:
| Other Authors: | , |
|---|---|
| Format: | Book |
| Language: | English |
| Published: |
New York, NY
Humana Press
[2017]
|
| Series: | Methods in molecular biology
1629 |
| Subjects: | |
| Online Access: | Inhaltstext Inhaltsverzeichnis |
| Item Description: | Includes bibliographical references and index |
| Physical Description: | xi, 350 Seiten Illustrationen, Diagramme 25.4 cm x 17.8 cm |
| ISBN: | 9781493971244 1493971247 |
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Record in the Search Index
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Titel: Plant gene regulatory networks
Autor: Kaufmann, Kerstin
Jahr: 2017
Contents
Preface. p
Contributors. ix
1 From Genes to Networks: Characterizing Gene-Regulatory
Interactions in Plants. 1
Kerstin Kaufmann and Dijun Chen
Part I Experimental Approaches to Study Plant
Gene-Regulatory Networks
2 Inducible Promoter Systems for Gene Perturbation Experiments
in Arabidopsis. 15
Bennett Thomson, Emmanuelle Graciet, and Frank Wellmer
3 Cell Type-Specific Gene Expression Profiling Using
Fluorescence-Activated Nuclear Sorting. 27
Daniel Slane and Martin Bayer
4 Characterization of Cell-Type-Specific DNA Binding Sites of Plant
Transcription Factors Using Chromatin Immunoprecipitation. 37
On Sun Lau
5 Yeast One- and Two-Hybrid High-Throughput Screenings Using
Arrayed Libraries. 47
Rocio Sdnchez-Montesino and Luis Onate-Sdnchez
6 SELEX-Seq: A Method to Determine DNA Binding Specificities
of Plant Transcription Factors. 67
Cezary Smaczniak, Gerco C. Angenent, and Kerstin Kaufmann
7 Analysis of a Plant Transcriptional Regulatory Network Using
Transient Expression Systems. 83
Sara Diaz-Trivino, Tuchen Long, Ben Scheres, and Ikram Blilou
8 Analysis of In Vivo Chromatin and Protein Interactions
of Arabidopsis Transcript Elongation Factors. 105
Alexander If ab, Wojciech Antosz, Philipp Holzinger, Astrid Bruckmann,
Joachim Griesenbeck, and Klaus D. Grasser
9 Characterization of Mediator Complex and its Associated
Proteins from Rice. 123
Subhasis Samanta and Jitendra Kumar Thakur
10 DNase I SIM: A Simplified In-Nucleus Method for DNase I Hypersensitive
Site Sequencing. 141
Sergei A. Filichkin and Molly Megraw
11 In Situ Hi-C Library Preparation for Plants to Study Their
Three-Dimensional Chromatin Interactions on a Genome-Wide Scale. 155
Chang Liu
vii
viii
Contents
12 Multiplexed Transcriptional Activation or Repression in Plants Using
CRISPR-dCas9-Based Systems. 167
Levi G. Lowder, Joseph W. Paul III, and Piping Qi
13 Generation of dTALEs and Libraries of Synthetic TALE-Activated
Promoters for Engineering of Gene Regulatory Networks in Plants. 185
Tom Schreiber and Alain Tissier
Part II Computational Approaches to Study Plant
Gene-Regulatory Networks
14 Design of Knowledge Bases for Plant Gene Regulatory Networks. 207
Eric Mukundi, Fabio Gomez-Cano, Wilberforce Zachary Ouma,
and Erich Grotewold
15 AraNet: A Network Biology Server for Arabidopsis thaliana
and Other Non-Model Plant Species. 225
Tak Lee and Insuk Lee
16 Integration of Genome-Wide TF Binding and Gene Expression Data
to Characterize Gene Regulatory Networks in Plant Development. 239
Dijun Chen and Kerstin Kaufmann
17 Predicting Transcription Factor Binding Sites and Their Cognate
Transcription Factors Using Gene Expression Data. 271
Chun-Ping Pu and Wen-Hsiung Li
18 Computational Approaches to Study Gene Regulatory Networks. 283
Nooshin Omranian and Zoran Nikoloski
19 Boolean Dynamic Modeling Approaches to Study Plant Gene
Regulatory Networks: Integration, Validation, and Prediction. 297
Jose Ddvila Velderrain, Juan Carlos Martinez-Garcia,
and Elena R. Alvarez-Buylla
20 ODE-Based Modeling of Complex Regulatory Circuits. 317
Daniel D. Seaton
21 Inferring Gene Regulatory Networks in the Arabidopsis
Root Using a Dynamic Bayesian Network Approach. 331
Maria Angels de Luis Balaguer and Rosangela Sozzani
Index. 349 |
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| ctrlnum | (OCoLC)1001472227 (DE-599)DNB1127875388 |
| discipline | Biologie |
| format | Book |
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| spelling | Plant gene regulatory networks methods and protocols edited by Kerstin Kaufmann, Bernd Mueller-Roeber New York, NY Humana Press [2017] © 2017 xi, 350 Seiten Illustrationen, Diagramme 25.4 cm x 17.8 cm txt rdacontent n rdamedia nc rdacarrier Methods in molecular biology 1629 Springer Protocols Includes bibliographical references and index Genregulation (DE-588)4122166-7 gnd rswk-swf Pflanzen (DE-588)4045539-7 gnd rswk-swf Molekularbiologische Methode (DE-588)7650063-9 gnd rswk-swf PST ; BISAC Subject Heading Gene identification Expression systems Computational approaches Bioinformatics PST ; BIC subject category (DE-588)4143413-4 Aufsatzsammlung gnd-content Pflanzen (DE-588)4045539-7 s Genregulation (DE-588)4122166-7 s Molekularbiologische Methode (DE-588)7650063-9 s DE-604 Kaufmann, Kerstin 1977- (DE-588)131469878 edt Müller-Röber, Bernd 1964- (DE-588)143589520 edt Springer Science + Business Media LLC (DE-588)1065492340 pbl Erscheint auch als Online-Ausgabe 978-1-4939-7125-1 Methods in molecular biology 1629 (DE-604)BV035362695 1629 X:MVB text/html http://deposit.dnb.de/cgi-bin/dokserv?id=dfa8b8941e3e4fa382dc6f915172bda6&prov=M&dok_var=1&dok_ext=htm Inhaltstext HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=029765442&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Plant gene regulatory networks methods and protocols Methods in molecular biology Genregulation (DE-588)4122166-7 gnd Pflanzen (DE-588)4045539-7 gnd Molekularbiologische Methode (DE-588)7650063-9 gnd |
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| title | Plant gene regulatory networks methods and protocols |
| title_auth | Plant gene regulatory networks methods and protocols |
| title_exact_search | Plant gene regulatory networks methods and protocols |
| title_full | Plant gene regulatory networks methods and protocols edited by Kerstin Kaufmann, Bernd Mueller-Roeber |
| title_fullStr | Plant gene regulatory networks methods and protocols edited by Kerstin Kaufmann, Bernd Mueller-Roeber |
| title_full_unstemmed | Plant gene regulatory networks methods and protocols edited by Kerstin Kaufmann, Bernd Mueller-Roeber |
| title_short | Plant gene regulatory networks |
| title_sort | plant gene regulatory networks methods and protocols |
| title_sub | methods and protocols |
| topic | Genregulation (DE-588)4122166-7 gnd Pflanzen (DE-588)4045539-7 gnd Molekularbiologische Methode (DE-588)7650063-9 gnd |
| topic_facet | Genregulation Pflanzen Molekularbiologische Methode Aufsatzsammlung |
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