Gene regulation, epigenetics and hormone signaling: Volume 1
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| Language: | English |
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Weinheim
Wiley-VCH
2017
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| Online Access: | Inhaltsverzeichnis |
| Physical Description: | xiv, 327 Seiten Illustrationen, Diagramme |
| ISBN: | 9783527322817 |
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Contents
Preface XIII
Volume I
1 Eukaryotic Gene Expression by RNA Polymerase II 1
Geetha Durairaj, Shivoni Malik, and 5ukesh R. Bhaumik
1.1 Introduction 1
1.2 Transcriptional Initiation of RNA Polymerase II Genes 1
1.3 Transcriptional Elongation of RNA Polymerase II Genes 5
1.4 Transcriptional Termination of RNA Polymerase II Gene 8
1.5 Capping of mRNA at the 5 -End 9
1.6 Processing of mRNA at the 3 ~End 10
1.7 Splicing of mRNA 11
1.8 Nuclear Export of mRNA for Translation 13
1.9 Conclusion 17
References 17
2 Epigenetic Code: Histone Modification, Gene Regulation, and Chromatin
Dynamics 29
Arunoday Bhan, Paromita Deb, and Subhrangsu 5. Mandai
2.1 Introduction 29
2.2 Histone Modifications 31
2.2.1 Histone Acetylation and Deacetylation 31
2.2.2 Histone Lysine Méthylation 33
2.2.2.1 Histone H3K4֊Specific Methylases 34
2.2.2.2 H3K9-Specific Histone Methylases 35
2.2.2.3 H3K27-Specific Methylases 35
2.2.2.4 H3K36-Methylases 36
2.2.2.5 H4K20-Specfic Methylases 37
2.2.2.6 H3K79-Methylases 37
2.3 Histone Lysine Déméthylation 38
2.4 Histone Arginine Méthylation 39
2.5 Histone Phosphorylation and Dephosphorylation 40
Vj I Contents
2.6
2.7
2.8
3
3.1
3.2
3.2.1
3.2.1.1
3.2.1.2
3.2.1.3
3.2.1.4
3.2.1.5
3.2.1.6
3.2.1.7
3.2.1.8
3.2.1.9
3.2.2
3.2.2.1
3.2.2.2
3.2.2.3
3.2.2.4
3.2.2.5
3.2.2.6
3.2.2.7
3.2.2.8
3.2.2.9
3.3
3.3.1
3.3.2
3.3.2.1
3.3.2.2
3.3.2.3
3.3.3
3.3.4
3.3.5
3.3.6
3.4
Histone ADP-Ribosylation 42
Histone Ubiquitination 43
“Epigenetic Code” Hypothesis and Conclusion 44
Acknowledgments 48
List of Abbreviations 48
References 49
Histone Lysine Méthylation, Déméthylation, and Hormonal Gene
Regulation 59
Yaiing Huang, Briana Dennehey, and Xiaobing Shi
Introduction 59
The Enzymes That Catalyze Histone Lysine Méthylation and
Déméthylation 60
Lysine Methyltransferases (KMTs) 61
KMT1 Family 61
KMT2 Family 71
KMT3 Family 72
KMT4 Family 73
KMT5 Family 73
KMT6 Family 73
KMT7 Family 73
KMT8 Family 74
Unclassified KMTs 74
Lysine Demethylases (KDMs) 75
KDM1 Family 75
KDM2 Family 75
KDM3 Family 76
KDM4 Family 76
KDM5 Family 76
KDM6 Family 77
KDM7 Family 77
KDM8 Family 77
Unclassified KDMs 78
Histone Lysine Méthylation in Hormone Signaling 78
Hormone Receptor Classification 78
Estrogen Receptor-Like Subfamily 80
Estrogen Receptor a 80
Androgen Receptor 83
Other ER-Like Receptors 84
Thyroid Hormone Receptor-Like Subfamily 85
Retinoid X Receptor-Like Subfamily 86
Nerve Growth Factor IB-Like Subfamily 87
Steroidogenic Factor-Like Subfamily 87
Perspectives 87
Contents VII
Acknowledgments 88
Abbreviations 88
References 89
4 The Role of HATs and HDACs in Cell Physiology and Disease 101
Irene Santos-Barriopedro, Helena Raurell-Vila, and Alejandro Vaquero
4.1 Introduction 101
4.2 HATs and HDACs 102
4.2.1 HATs 102
4.2Л.1 HAT Complexes 103
4.2.2 HDACs 104
4.2.2.1 HDAC Complexes in Transcription 105
4.3 Acetylation/Deacetylation in Chromatin-Associated Functions 107
4.3Л HATs, HDACs, and Transcription 107
4.3.1 Л Interplay between HATs/HDACs and Transcription Factors 108
4.3.2 Chromatin Structure and Heterochromatin 110
4.3.3 HATs and HDACs in DNA Repair 111
4.4 HATs and HDACs in Cell Physiology 113
4.4Л Cell-Cycle Regulation 113
4.4.2 Apoptosis, Aging, and Senescence 115
4.4.3 Differentiation and Development 117
4.4.3Л Stem Cells ІІ7
4.4.3.2 Embryonic Lethality and Early Development 117
4.4.3.3 Myogenesis and Osteogenesis 118
4.4.3.4 Heart Development, Angiogenesis, and Kidney Development 118
4.4.3.5 Adipose Tissue 119
4.43.6 Nervous System Development 119
4.4.3.7 Hematopoiesis 120
4.4.4 Metabolism 120
4.4.4.1 Lipid Metabolism 121
4.4.Л.2 Glucose Metabolism 121
4.4.4.3 Other Mitochondrial Processes 122
4.4.4.4 FOXO and Metabolism 122
4.5 Associated Diseases 122
4.5.1 Cancer 123
4.5.1.1 Leukemias 125
4.5.1.2 Breast Cancer 125
4.5.1.3 Other Cancers 125
4.5.1.4 Metastasis 126
4.5.2 Vascular Diseases 126
4.5.3 Neu rodegenerative Diseases 127
4.5.4 Other Diseases 127
References 127
Villi Contents
5 The Short and Medium Stories of Noncoding RNAs: microRNA and
siRNA 137
Arunoday Bhan, Paromita Deb, Mifad Soleimani, and Subhrangsu S. Monde:
5.1 Introduction 137
5.2 MicroRNA 140
5.2.1 Discovery of miRNAs 140
5.2.2 Biogenesis of miRNA 141
5.2.3 Processing of miRNA and its Mechanism of Action 141
5.2.4 Functional Significance of miRNA 144
5.2.4.1 Hormone Synthesis and Metabolism 146
5.2.4.2 Immune System 147
5.2.4.3 Reproduction 147
5.2.5 Association of miRNAs with Human Diseases and Cancer 148
5.3 Small Interfering RNA (siRNA) 151
5.3.1 Discovery of siRNAs 151
5.3.2 Biogenesis of siRNAs 152
5.3.3 Processing and Mechanism of Action of siRNAs 153
5.4 Piwi interacting RNA 154
5.5 Transcription Initiating RNAs (TiRNAs) 155
5.6 Small Nuclear RNAs (snRNAs) 155
5.7 Conclusion 156
Acknowledgments 157
Abbreviations 157
References 157
6 Long Noncoding RNA (IncRNA): Functions in Health and Disease 169
Arunoday Bhan, Miiad Soleimani, and Subhrangsu 5. Mandal
6.1 Introduction 169
6.2 Classification of IncRNAs 170
6.3 LncRNA: Functions and Mechanisms of Action 171
6.3.1 LncRNA XIST and TSIX in Dosage Compensation and
X-Inactivation 172
6.3.2 HOTAIR (HOX Antisense Intergenic IncRNA) in Gene
Silencing 172
6.3.3 H19: Important in Genomic Imprinting and microRNA
Biogenesis 175
6.3.4 ANRIL: Transcriptional Regulation of INK4A Locus 177
6.3.5 GAS5: Associated with Growth and Glucocorticoid Receptor-Mediated
Signaling 177
6.3.6 TERRA (Telomeric Repeat-Containing RNAs) in Telomere
Function 178
6.3.7 MEG3: Important Player in Genomic Imprinting 179
6.3.8 KCNQIOTl/LITl: Key Player in Genomic Imprinting 179
6.3.9 MALAT1 (Metastasis-Associated Lung Adenocarcinoma
Transcript 1) 180
63.10 PCAT1 180
63.11 PCGEM1 180
6.4 LncRNAs in Cancer 181
6.5 LncRNAs in Reproduction 185
6.6 LncRNAs in Myogenesis 187
6.7 LncRNA in Cardiovascular Disease 189
6.8 LncRNAs in Embryonic Development and Segmentation 190
6.9 LncRNA in Central Nervous System 190
6.10 LncRNAs in Neurological Disorders 191
6.10.1.1 Importance of ATXN80S in Spinocerebellar Ataxia 8 192
6.10.1.2 Role of DISCI and DISC2 in Schizophrenia and Neuronal
Hyperexcitability 192
6.10.13 UBE3A-AS in Prader-Willi Syndrome (PWS) and Angelman
Syndrome 193
6.11 LncRNA in Immune System and Immunological Disorders 193
6.12 Roles of IncRNAs in Various Heritable Syndromes 194
6.13 Conclusion 295
Acknowledgments 196
Abbreviations 196
References 197
1 Histone Variants: Structure, Function, and Implication in Diseases 209
Francisco Alvarez and Alejandro Loyola
7Л Histone Variants: Structure 209
7.1.1 Histone Proteins Have Sequence Variants 209
7.1.2 Histones are Posttranslationally Modified 211
7.1.3 Nucleosome Structure 213
7.13.1 Histone H2A Variants 214
7.1.3.2 Histone H3 Variants 218
7.2 Implication in Diseases 219
Acknowledgments 221
References 221
8 Genomic Imprinting in Mammals: Origin and Complexity of an
Epigenetically Regulated Phenomenon 227
Elena de la Casa-Esperon
8.1 Introduction: First Evidences and Extent of Genomic Imprinting 227
8.1.1 The Discovery of Imprinted Gene Expression 227
8.1.2 How Many Imprinted Genes? 228
8.2 Imprinted Genes: Common Features and Diversity of Regulatory
Mechanisms 229
8.2.1 Imprinted Domains and the Elements That Control Them 229
8.2.2 Imprinted Expression Can Be Regulated in Multiple Ways 231
8.3 Role of Imprinted Noncoding RNAs on Imprinting Control and
Other Functions 233
XI Contents
8.4 Parent-of Origin-Dependent Epigenetic Marks and the Role of
Chromatin Modifications and Interactions in Imprinting 234
8.4.1 Origin and Function of Differentially Methylated Regions in Imprinu· d
Domains 234
8.4.2 The Contribution of Histone Modifications to Imprinting
Control 237
8.4.3 Nuclear Location and Diverse Types of Interactions May also Play a
Role in the Regulation of Imprinted Genes 237
8.5 Imprinted Genes: Functions and Associated Diseases 238
8.5.1 Mutations and Epimutations of Imprinted Loci Result in Diverse
Disorders 238
8.5.2 Consequences of Loss of Imprinting 239
8.6 Origin and Evolution of Imprinting 241
8.6.1 Why Is There Imprinting? 241
8.6.2 When and How Did Imprinted Expression Emerge at
Diverse Genes? 244
8.7 Summary and Conclusion 246
Acknowledgments 247
References 247
9 Centromere and Kinetochore: Essential Components for Chromosome
Segregation 259
Shreyas Sridhar, Arti Dumbrepatil, Lakshmi Sreekumor, Sundar Ram
Sankaranarayanan, Krishnendu Guin, and Kaustuv Sanyal
9.1 Introduction 259
9.1.1 Distinguishing Features of Mitosis 261
9.1.1.1 Fungi 261
9.1.1.2 Animals 261
9.1.1.3 Plants 261
9.1.1.4 Protozoa 262
9.2 Centromeres 262
9.2.1 Diversity in Organization of DNA Elements Across Centromeres 263
9.2.1.1 Fungi 263
9.2.1.2 Animals 266
9.2.1.3 Plants 267
9.2.1.4 Protozoa 268
9.3 Kinetochores 269
9.3.1 Kinetochore Architecture 270
9.3.2 Centromere DNA-Associated Layer 270
9.3.2.1 Constitutive Centromere-Associated Network (CCAN) 270
9.3.3 Microtubule Interacting Layer 272
9.3.3.1 KMN Network 272
9.3.4 Kinetochore Assembly 273
9.3.4.1 Fungi 273
Contents
XI
93A.2 Animals 274
93.4.3 Plants 275
9.3.4.4 Protozoa 275
9.4 Neocentromere 276
9.4.1 Naturally Occurring Neocentromeres 276
9.4.1.1 Humans 276
9.4.1.2 Plants 277
9.4.2 Artificially Induced Neocentromeres 277
9.4.2.1 Fungi 277
9A2.2 Animals 278
9.4.3 Factors Relating to Neocentromere/Centromere
Formation 278
9.4.3.1 Centro mere՝ Associated Proteins 278
9.4.3.2 Chromatin 278
9.4.33 Replication Timing 278
9.5 Conclusions 279
Acknowledgment 280
References 280
10 Nuclear Receptors and NR-coregulators: Mechanism of Action and
Cell Signaling 289
Arunoday Bhan and Subhrangsu 5. Mandal
H).l introduction 289
-0.2 Structures of Nuclear Receptors 292
i 0.3 Mode of Action of Nuclear Receptors 295
10.4 Nuclear Receptor Coregulators 297
10.4.1 NR-Coactivators 298
10.4.1.1 ATP Dependent Chromatin Remodelers 298
10.4.1.2 Histone Acetyl transferases 299
10.4.1.3 Histone Methyl transferases and Demethylases in NR-Regulated
Gene Expression 301
10.4.1.4 Histone Demethylase 302
10.4.1.5 PGC-la (Peroxisome Proliferator-Activated Receptor Gamma
Coactivator 1-Alpha) as NR-Coactivator 306
10.4.1.6 Proline-, Glutamic Acid-, Leucine-Rich Protein 1 (PELP1) as
NR-Coactivator 306
10.4.2 Corepressors 306
10.4.3 Noncoding RNA (ncRNA) as NR-Co regulators 308
10.5 NRs and NR-Coregulators in Human Diseases 308
10.6 NRs and NR-Coregulators as Drug Targets 310
10.7 Conclusion 313
Acknowledgments 313
Abbreviations 313
References 314
XII Contents
Volume If
11 Estrogen and Progesterone Receptor Signaling and Action 329
Linda I. Perrotti
12 Gonadal Steroid Hormones and Brain Protection 355
Meharvan Singh, Courtney Brock, Rebecca Cunningham, and Chang Su
13 Glucocorticoid Receptor-Mediated Signaling and Stress
Metabolism 377
Rosalie M. Uht and Shreyas Bhave
14 Targeting Androgen Signaling in Prostate Cancer 399
Paul H. Chung, Preethi Ravindranathan, Bishoy A. Gayed, and Ganesh V. Rq
15 Role of Peroxisome Proliferator-Activated Receptors in inflammation
and Angiogenesis 417
Suchismita Acharya
16 RAR/RXR-Mediated Signaling 457
Jörg Mey
17 On the Trail of Thyroid Hormone Receptor Epigenetics 511
Pradip K. Sarkar
18 Insulin Signaling, Epigenetics, and Human Diseases 541
Rag it ha Chruvattil, Muskaan Belani, Tushar P. Patel, and Santa Gupta
19 Endocrine Disruptors and Epigenetics 577
John D. Bowman, Shaikh Mizanoor Rahman, and Mahua Choudhury
20 Endocrine Disruptors: Mechanism of Action and Impacts on Health
and Environment 607
Paromita Deb and Subhrangsu S. Mandal
Index 639
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| id | DE-604.BV044342359 |
| illustrated | Illustrated |
| indexdate | 2024-07-10T07:50:17Z |
| institution | BVB |
| isbn | 9783527322817 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-029745371 |
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| owner_facet | DE-29 DE-11 DE-355 DE-BY-UBR DE-703 |
| physical | xiv, 327 Seiten Illustrationen, Diagramme |
| publishDate | 2017 |
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| spelling | Gene regulation, epigenetics and hormone signaling Volume 1 edited by Subhrangsu S. Mandal Weinheim Wiley-VCH 2017 xiv, 327 Seiten Illustrationen, Diagramme txt rdacontent n rdamedia nc rdacarrier Epigenetik (DE-588)7566079-9 gnd rswk-swf Endokrine Regulation (DE-588)4113434-5 gnd rswk-swf Genregulation (DE-588)4122166-7 gnd rswk-swf Genregulation (DE-588)4122166-7 s Epigenetik (DE-588)7566079-9 s Endokrine Regulation (DE-588)4113434-5 s DE-604 Mandal, Subhrangsu S. Sonstige (DE-588)1137339268 oth (DE-604)BV044342350 1 Digitalisierung UB Regensburg - ADAM Catalogue Enrichment application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=029745371&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Gene regulation, epigenetics and hormone signaling Epigenetik (DE-588)7566079-9 gnd Endokrine Regulation (DE-588)4113434-5 gnd Genregulation (DE-588)4122166-7 gnd |
| subject_GND | (DE-588)7566079-9 (DE-588)4113434-5 (DE-588)4122166-7 |
| title | Gene regulation, epigenetics and hormone signaling |
| title_auth | Gene regulation, epigenetics and hormone signaling |
| title_exact_search | Gene regulation, epigenetics and hormone signaling |
| title_full | Gene regulation, epigenetics and hormone signaling Volume 1 edited by Subhrangsu S. Mandal |
| title_fullStr | Gene regulation, epigenetics and hormone signaling Volume 1 edited by Subhrangsu S. Mandal |
| title_full_unstemmed | Gene regulation, epigenetics and hormone signaling Volume 1 edited by Subhrangsu S. Mandal |
| title_short | Gene regulation, epigenetics and hormone signaling |
| title_sort | gene regulation epigenetics and hormone signaling |
| topic | Epigenetik (DE-588)7566079-9 gnd Endokrine Regulation (DE-588)4113434-5 gnd Genregulation (DE-588)4122166-7 gnd |
| topic_facet | Epigenetik Endokrine Regulation Genregulation |
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