Modern proteomics - sample preparation, analysis and practical applications:
Saved in:
| Other Authors: | , |
|---|---|
| Format: | Book |
| Language: | English |
| Published: |
Cham
Springer
2016
|
| Series: | Advances in experimental medicine and biology
919 |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Physical Description: | ix, 533 Seiten Illustrationen |
| ISBN: | 9783319414461 |
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MARC
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Record in the Search Index
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| adam_text | Titel: Modern proteomics – sample preparation, analysis and practical applications
Autor: Mirzaei, Hamid
Jahr: 2016
Contents
Part I Sample Preparation Strategies for Proteomics
1 Proteomes, Their Compositions and Their Sources........ 3
Anna Kwasnik, Claire Tonry, Angela Mc Ardle,
Aisha Qasim Butt, Rosanna Inzitari, and Stephen R. Pennington
2 Protein Fractionation and Enrichment Prior
to Proteomics Sample Preparation..................... 23
Andrew J. Alpert
3 Sample Preparation for Mass Spectrometry-Based
Proteomics; from Proteomes to Peptides................ 43
John C. Rogers and Ryan D. Bomgarden
4 Plant Structure and Specificity - Challenges and Sample
Preparation Considerations for Proteomics.............. 63
Sophie Alvarez and Michael J. Naldrett
5 Improving Proteome Coverage by Reducing Sample
Complexity via Chromatography...................... 83
Uma Kota and Mark L. Stolowitz
Part II Mass Spectrometry for Proteomics Analysis
6 Database Search Engines: Paradigms, Challenges
and Solutions..................................... 147
Kenneth Verheggen, Lennart Martens, Frode S. Berven,
Harald Barsnes, and Marc Vaudel
7 Mass Analyzers and Mass Spectrometers............... 157
Anthony M. Haag
8 Top-Down Mass Spectrometry: Proteomics
to Proteoforms.................................... 171
Steven M. Patrie
vii
viii Contents
Part III Bioinformatic Tools for Proteomics data Analysis
and Interpretation
9 Platforms and Pipelines for Proteomics Data Analysis
and Management.................................. 203
Marius Cosmin Codrea and Sven Nahnsen
10 Tandem Mass Spectrum Sequencing: An Alternative
to Database Search Engines in Shotgun Proteomics........ 217
Thilo Muth, Erdmann Rapp, Frode S. Berven, Harald Barsnes,
and Marc Vaudel
11 Visualization, Inspection and Interpretation of Shotgun
Proteomics Identification Results...................... 227
Ragnhild R. Lereim, Eystein Oveland, Frode S. Berven,
Marc Vaudel, and Harald Barsnes
12 Protein Inference.................................. 237
Zengyou He, Ting Huang, Can Zhao, and Ben Teng
13 Modification Site Localization in Peptides............... 243
Robert J. Chalkley
14 Useful Web Resources.............................. 249
Andre Bui and Maria D. Person
15 Mass Spectrometry-Based Protein Quantification......... 255
Yun Chen, Fuqiang Wang, Feifei Xu, and Ting Yang
16 Bioinformatics Tools for Proteomics
Data Interpretation................................ 281
Karla Grisel Calderon-Gonzalez, Jesus Hernandez-Monge,
Maria Esther Herrera-Aguirre, and Juan Pedro Luna-Arias
Part IV Applications of Proteomics Technologies in Biological
and Medical Sciences
17 Identification, Quantification, and Site Localization
of Protein Posttranslational Modifications via Mass
Spectrometry-Based Proteomics...................... 345
Mi Ke, Hainan Shen, Linjue Wang, Shusheng Luo, Lin Lin,
Jie Yang, and Ruijun Tian
18 Protein-Protein Interaction Detection Via Mass
Spectrometry-Based Proteomics...................... 383
Benedetta Turriziani, Alexander Kriegsheim,
and Stephen R. Pennington
19 Protein Structural Analysis via Mass Spectrometry-Based
Proteomics....................................... 397
Antonio Artigues, Owen W. Nadeau, Mary Ashley Rimmer,
Maria T. Villar, Xiuxia Du, Aron W. Fenton,
and Gerald M. Carlson
Contents ix
Part V Clinical Proteomics
20 Introduction to Clinical Proteomics.................... 435
John E. Wiktorowicz and Allan R. Brasier
21 Discovery of Candidate Biomarkers................... 443
John E. Wiktorowicz and Kizhake V. Soman
22 Statistical Approaches to Candidate Biomarker
Panel Selection.................................... 463
Heidi M. Spratt and Hyunsu Ju
23 Qualification and Verification of Protein Biomarker
Candidates....................................... 493
Yingxin Zhao and Allan R. Brasier
24 Protocol for Standardizing High-to-Moderate
Abundance Protein Biomarker Assessments Through
an MRM-with-Standard-Peptides Quantitative
Approach........................................ 515
Andrew J. Percy, Juncong Yang, Andrew G. Chambers,
Yassene Mohammed, Tasso Miliotis,
and Christoph H. Borchers
Index
531
|
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| illustrated | Illustrated |
| indexdate | 2024-07-10T07:37:08Z |
| institution | BVB |
| isbn | 9783319414461 |
| language | English |
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| physical | ix, 533 Seiten Illustrationen |
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| series | Advances in experimental medicine and biology |
| series2 | Advances in experimental medicine and biology |
| spelling | Modern proteomics - sample preparation, analysis and practical applications Hamid Mirzaei, Martin Carrasco, editors Cham Springer 2016 ix, 533 Seiten Illustrationen txt rdacontent n rdamedia nc rdacarrier Advances in experimental medicine and biology 919 Molekularbiologische Methode (DE-588)7650063-9 gnd rswk-swf Proteomanalyse (DE-588)4596545-6 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Proteomanalyse (DE-588)4596545-6 s Molekularbiologische Methode (DE-588)7650063-9 s b DE-604 Mirzaei, Hamid edt Carrasco, Martin edt Advances in experimental medicine and biology 919 (DE-604)BV000003102 919 HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=029275498&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Modern proteomics - sample preparation, analysis and practical applications Advances in experimental medicine and biology Molekularbiologische Methode (DE-588)7650063-9 gnd Proteomanalyse (DE-588)4596545-6 gnd |
| subject_GND | (DE-588)7650063-9 (DE-588)4596545-6 (DE-588)4143413-4 |
| title | Modern proteomics - sample preparation, analysis and practical applications |
| title_auth | Modern proteomics - sample preparation, analysis and practical applications |
| title_exact_search | Modern proteomics - sample preparation, analysis and practical applications |
| title_full | Modern proteomics - sample preparation, analysis and practical applications Hamid Mirzaei, Martin Carrasco, editors |
| title_fullStr | Modern proteomics - sample preparation, analysis and practical applications Hamid Mirzaei, Martin Carrasco, editors |
| title_full_unstemmed | Modern proteomics - sample preparation, analysis and practical applications Hamid Mirzaei, Martin Carrasco, editors |
| title_short | Modern proteomics - sample preparation, analysis and practical applications |
| title_sort | modern proteomics sample preparation analysis and practical applications |
| topic | Molekularbiologische Methode (DE-588)7650063-9 gnd Proteomanalyse (DE-588)4596545-6 gnd |
| topic_facet | Molekularbiologische Methode Proteomanalyse Aufsatzsammlung |
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