Rice genetics V proceedings of the Fifth International Rice Genetics Symposium, the Philippines, 19-23 November 2005 (World Scientific, 2007)
Includes bibliographical references
Cover -- Contents -- FOREWORD -- ACKNOWLEDGMENTS -- RICE8212;A MODEL GENOME FOR CEREAL RESEARCH -- Rice as a reference genome and more -- Rice as a reference -- Finding orthologous genes and quantitative trait loci (QTLs) -- Value of rice for cloning genes underlying QTLs -- American wildrice as a case study -- References -- Notes -- The complete rice genome sequence: a gold mine for future rice research -- Overview of the rice genome structure -- Utility of rice genome sequence information -- Conclusions -- References -- Notes -- Annotation of the rice genome -- Construction of a rice transcript assembly -- Repetitive sequences in the rice genome -- TIGR Rice Genome Browser -- Noncoding RNAs -- Mapping of genetic markers and microsatellite repeats -- SNPs and indel identification between indica and japonica -- Conclusions -- References -- Notes -- STRUCTURAL GENOMICS AND RESOURCES --
- The Oryza map alignment project (OMAP): a new resource for comparative genomics studies within Oryza -- Results -- Summary, conclusions, and future research -- References -- Notes -- Analysis of oligo hybridization properties by high-resolution tiling microarrays in rice -- Characteristics of the rice genome and its annotation -- Tiling-path microarray analysis in rice -- Using tiling microarrays to experimentally analyze probe hybridization properties -- Experimental design of the high-resolution rice tiling microarray -- Tiling-array raw data processing workflow -- Mapping tiling-array signals to annotated gene models -- Oligo hybridization properties analysis -- Conclusions and prospects -- References -- Notes -- Tissue culture8211;induced mutations and overexpression of full-length cDNAs as a tool for functional analysis of rice genes -- Forward and reverse genetics using Tos17 -- Limitations and future prospects -- References -- Notes --
- Analysis of genome sequences from the maternal and paternal parents of an elite rice hybrid -- Rice genome sequences produced through a whole-genome shotgun approach are of high quality -- Preliminary analysis of the PA64S genome assembly -- In search of genes and their variations involved in hybrid vigor -- References -- Notes -- DEVELOPMENTAL BIOLOGY AND GENE REGULATION -- T-DNA tagging for developmental biology -- Results -- Discussion -- References -- Notes -- Novel insights into the genomics of rice root adaptive development -- Rice root system organization, morphology, and anatomy -- Genetic and molecular control of constitutive root development -- Plasticity of root architecture -- Novel tools for investigating root developmental processes -- Conclusions and prospects -- References -- Notes -- Molecular signaling in disease resistance of rice -- Seven OsRac genes in rice -- Downstream factors of OsRac1 signaling in defense response --
- Upstream factors of OsRac1 signaling in defense response -- Emerging technologies for the study of molecular signaling in disease resistance of rice -- References -- Notes -- APPLIED GENETICS -- QTLs in rice breeding: examplesfor abiotic stresses -- Development and spread of mega varieties -- Big QTLs versus small QTLs -- A case study of QTL breeding: submergence tolerance -- Using gene markers for QTL introgression -- Implications for breeding for rainfed conditions