Guide to research techniques in neuroscience:
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| Main Authors: | , |
|---|---|
| Format: | Book |
| Language: | English |
| Published: |
Amsterdam [u.a.]
Elsevier
2015
|
| Edition: | 2. ed. |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Item Description: | Academic Press is an imprint of Elsevier |
| Physical Description: | XXVIII, 388 S. Ill., graph. Darst. |
| ISBN: | 9780128005118 |
Staff View
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Record in the Search Index
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| adam_text | Titel: Guide to research techniques in neuroscience
Autor: Carter, Matt
Jahr: 2015
Contents
Foreword to the Second Edition xiii
Foreword to the First Edition xv
Preface to the Second Edition xvii
Preface to the First Edition xix
Introduction xxiii
1. Whole-Brain Imaging
Structural Brain Imaging Techniques 2
Cerebral Angiography 3
Computerized Tomography 4
Magnetic Resonance Imaging 6
Diffusion MRI 12
Functional Brain Imaging Techniques 14
Functional Magnetic Resonance Imaging 14
Positron Emission Tomography 17
Single-Proton Emission Computerized Tomography 19
Electroencephalography 20
Magnetoencephalography 20
Optical Imaging 22
Functional Imaging Experimental Design and Analysis 24
Planning the Experiment 25
Conducting the Experiment 29
Manipulating Neural Activity during an Experiment 31
Postexperimental Data Analysis 32
Conclusion 35
Suggested Reading and References 37
2. Animal Behavior
Considerations for Choosing and Performing a Behavioral Assay 40
Choosing an Appropriate Model Organism 40
Choosing an Appropriate Behavioral Paradigm 41
Variability in Individuals 42
Using Animal Behavior as a Model for Human Behavior 43
v
vi Contents
Rodent Behavioral Paradigms
Locomotor Activity 44
Motor Coordination and Balance 45
Sensory Function 4®
Nociception 50
Spatial Learning and Memory 52
Nonspatial Learning and Memory 54
Attention and Impulsivity 56
Reward-Related Behaviors 56
Social Behaviors 57
Anxiety 58
Depression 60
Drosophila Behavioral Paradigms 61
Locomotor Behavior 62
Flight 62
Sensory Function 63
Learning and Memory 65
Social Behaviors 65
Caenorhabditis elegans Behavioral Paradigms 65
Locomotor Behavior 66
Sensory Behavior 66
Nonhuman Primate Behavioral Paradigms 67
Conclusion 69
Suggested Reading and References 69
3. Stereotaxic Surgeries and In Vivo Techniques
Stereotaxic Surgeries 74
Stereotaxic Surgeries in Rodents 76
Stereotaxic Surgeries in Nonhuman Primates 79
Implants for Long-Term Access to the Brain 80
Sealable Chambers 80
Cannulae 80
Cranial Windows 81
Measuring Neural Activity In Vivo 81
Electrophysiology 81
Fluorescent Activity Indicators 82
Measuring Neural Chemistry In Vivo 82
Microdialysis 82
Voltammetry and Amperometry 84
Manipulating Neural Activity In Vivo 86
Conclusion 86
Suggested Reading and References 86
4. Electrophysiology
A Brief Review of the Electrical Properties of Neurons 90
The Electrophysiology Rig 92
Categories of Electrophysiology Recordings 93
Contents vii
Extracellular Recording 99
Intracellular Recording 105
Patch Clamp Techniques 105
Electrophysiology Tissue Preparations 108
In Vitro Recordings 108
In Vivo Recordings 112
Manipulating Neural Activity during
Electrophysiology Experiments 113
Conclusion 114
Suggested Reading and References 114
5. Microscopy
Essential Principles of Microscopy 118
Fundamental Parameters in Microscopy 118
The Design of a Compound Microscope 121
The Design of a Stereomicroscope 125
Light Microscopy 126
Fluorescence Microscopy 128
Epifluorescent Microscopy 129
Confocal Microscopy 129
Two-Photon Microscopy 132
Total Internal Reflection Fluorescence Microscopy 132
Electron Microscopy 133
Transmission Electron Microscopy 134
Scanning Electron Microscopy 134
Electron Tomography 135
Preparing and Interpreting Microscopy Data 136
I mage Processi ng 136
Interpreting Images 137
Conclusion 139
Suggested Reading and References 143
6. Visualizing Neural Structure
Tissue Preparation 146
Fixation 146
Embedding 147
Sectioning 147
Visualizing Morphology 150
Cell Body Stains 150
Fiber Stains 152
Golgi Stain 152
Intracellular and Juxtacellular Labeling 153
Visualizing Gene and Protein Expression 156
In Situ Hybridization 156
Immunohistochemistry 158
Enzymatic Histochemistry 160
Reporter Genes 160
viii Contents
Visualizing Circuitry 1b2
Anterograde and Retrograde Tracers 162
Transsynaptic Labeling 164
Conclusion 165
Suggested Reading and References 165
7. Visualizing Neural Function
Static Markers of Activity 168
Assaying Neural Activity in Fixed Tissue 168
Assaying Cellular Function in Fixed Tissue 169
Visualizing Neural Activity 171
Imaging Voltage 171
Imaging Calcium Dynamics 173
Imaging Synaptic Transmission 176
Visualizing Protein Function 177
Time-Lapse Imaging with Reporter Genes 177
Fluorescence Resonance Energy Transfer 177
Bimolecular Fluorescence Complementation 180
Fluorescence Recovery after Photobleaching 180
Photoactivation and Photoconversion 180
Conclusion 181
Suggested Reading and References 181
8. Manipulating Neural Activity
Experimental Logic of Manipulating Neural Activity 186
Physical Manipulation 187
Ablation 187
Thermal Cooling 188
Electrical Manipulation 189
Pharmacological Manipulation 189
Genetic Manipulation 191
Pharmacogenetic Manipulation 192
Optogenetic Manipulation 193
Optogenetic Transgenes 193
Methods of Delivering Light to the Nervous System 195
Strategies for Studying Neural Circuits Using Cytogenetics 196
Neuromodulation Techniques Used in Humans 197
Conclusion 197
Suggested Reading and References 200
9. Identifying Genes and Proteins of Interest
A Brief Review of Genes and Proteins 204
The Central Dogma of Molecular Biology 204
Deoxyribonucleic Acid 204
Contents ix
Transcription 206
Translation 208
Genetic Screens 209
Forward Genetic Screen 210
Reverse Genetic Screen 213
In Silico Screens 214
BLAST 214
Ensembl 214
Molecular Screens 214
cDNA Microarray Screen 215
RNAi Screen 216
Conclusion 216
Suggested Reading and References 217
Molecular Cloning and Recombinant DNA Technology
Isolating DNA Fragments 220
Restriction Enzymes 220
Polymerase Chain Reaction 221
Isolation and Characterization of DNA Fragments Using Gel
Electrophoresis 226
Cloning DNA 227
Vectors 227
Ligation 229
Transformation 231
Purifying DNA from Host Cells 231
Identifying DNA 231
DNA Sequencing 233
Nucleic Acid Hybridization Techniques 234
Conclusion 236
Suggested Reading and References 236
Gene Delivery Strategies
Physical Gene Delivery 239
Microinjection 240
Electroporation 241
Biolistics 243
Chemical Gene Delivery 244
Calcium Phosphate Transfection 244
Lipid Transfection 246
Viral Gene Delivery 247
Adenovirus 248
Can ine Adenovi rus 248
Herpes Simplex Virus 249
Adeno-Associated Virus 250
Lentivirus 250
x Contents
Conclusion
Suggested Reading and References 251
12. Making and Using Transgenic Organisms
T ransgenes 254
Reporter Genes 254
Genes Used to Measure Neural Activity 254
Genes Used to Manipulate Neural Activity 256
Genes Used to Ablate Neurons 257
Genes Used to Disrupt Endogenous Gene Function 257
Overexpression of Endogenous Genes 258
The Transgenic Construct 258
Binary Transgenic Systems 261
The Gal4/UAS System 262
The Cre/Lox System 263
The Flp/Frt System 264
The Tet-off/Tet-on System 264
Making Transgenic Organisms 265
Making Transgenic Mice 265
Making Transgenic Flies 267
Making Transgenic Worms 267
Making Other Transgenic Organisms 269
Conclusion 269
Suggested Reading and References 270
13. Manipulating Endogenous Genes
Classical Gene Targeting Methods 274
Knockout Mouse 275
Knockin Mouse 282
Conditional Knockout Mouse 282
Nuclease-Based Gene Targeting Methods 284
Disrupting Gene Products 287
RNA Interference (RNAi) 287
Morpholinos 289
Dominant Negatives 290
Conclusion 291
Suggested Reading and References 291
14. Cell Culture Techniques
Cell Culture Equipment and Reagents 296
Equipment 296
Culture Media 298
Immortalized Cell Lines 298
Primary Cell and Tissue Culture 301
Contents xi
Slice Cultures 302
Explant Cultures 303
Dissociated Cell Cultures 303
Stem Cell Cultures 304
Embryonic Stem Cells 304
Neural Stem Cells 305
Induced Pluripotent Stem Cells 306
Manipulating Cells in Culture 307
Transfection and Infection 307
Co-Culture Systems 307
Pharmacology 308
Antibody Interference 308
Conclusion 308
Suggested Reading and References 309
15. Biochemical Assays and Intracellular Signaling
Introduction to Signal Transduction and Intracellular Signaling 313
Fundamental Tools Used to Study Proteins 313
Making and Using Antibodies 314
Purifying Proteins 318
Investigating Protein Expression 320
Western Blot 320
Enzyme-Linked Immunosorbent Assay 323
Radioimmunoassay 324
lmmunohistochemistry 325
lmmunoelectron Microscopy 326
Reporter Proteins 327
Investigating Protein-Protein Interactions 327
Co-lmmunoprecipitation 327
Protein Affinity Chromatography 328
Yeast Two-Hybrid Assay 330
Investigating Posttranslational Modifications 331
PTM-Specific Assays 336
PTM-Specific Antibodies 337
Investigating Protein-DNA Interactions 337
Electrophoretic Mobility Shift Assay 338
Chromatin Immunoprecipitation 339
Luciferase Assay 341
Conclusion 342
Suggested Reading and References 342
Glossary
Index
345
377
|
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| spellingShingle | Carter, Matt 1978- Shieh, Jennifer C. 1981- Guide to research techniques in neuroscience Neurosciences / Research / Methodology Diagnostic imaging Neurowissenschaften (DE-588)7555119-6 gnd Radiologische Diagnostik (DE-588)4048214-5 gnd Untersuchungsmethode (DE-588)4324907-3 gnd Methode (DE-588)4038971-6 gnd Neurologie (DE-588)4041888-1 gnd |
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| title | Guide to research techniques in neuroscience |
| title_auth | Guide to research techniques in neuroscience |
| title_exact_search | Guide to research techniques in neuroscience |
| title_full | Guide to research techniques in neuroscience Matt Carter, Jennifer Shieh |
| title_fullStr | Guide to research techniques in neuroscience Matt Carter, Jennifer Shieh |
| title_full_unstemmed | Guide to research techniques in neuroscience Matt Carter, Jennifer Shieh |
| title_short | Guide to research techniques in neuroscience |
| title_sort | guide to research techniques in neuroscience |
| topic | Neurosciences / Research / Methodology Diagnostic imaging Neurowissenschaften (DE-588)7555119-6 gnd Radiologische Diagnostik (DE-588)4048214-5 gnd Untersuchungsmethode (DE-588)4324907-3 gnd Methode (DE-588)4038971-6 gnd Neurologie (DE-588)4041888-1 gnd |
| topic_facet | Neurosciences / Research / Methodology Diagnostic imaging Neurowissenschaften Radiologische Diagnostik Untersuchungsmethode Methode Neurologie |
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