Reaction-Diffusion Dynamics in biological systems:
Gespeichert in:
| 1. Verfasser: | |
|---|---|
| Format: | Abschlussarbeit Buch |
| Sprache: | English |
| Veröffentlicht: |
2014
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| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | Zsfassung in engl. Sprache |
| Beschreibung: | XII, 149 S. Ill., graph. Darst. |
Internformat
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Datensatz im Suchindex
| _version_ | 1804153007084929024 |
|---|---|
| adam_text | CONTENTS
1 INTRODUCTION 1
2 MODELING BIOLOGICAL REACTION-DIFFUSION PROCESSES
3 PARTICLE-BASED REACTION-DIFFUSION 9
3.1 PARTICLE DIFFUSION 9
3.2 REACTIONS 11
3.3 INTERACTION POTENTIALS AND STATIONARY DISTRIBUTIONS 14
3.4 DIFFUSION PROPERTIES 15
4
READDY
19
4.1 READDY SOFTWARE 23
4.2 PARAMETRIZATION AND VALIDATION 37
4.3 DIFFUSION AND CROWDING 41
4.4 REACTION KINETICS AND CROWDING 42
4.5 POSSIBLE BIOLOGICAL APPLICATIONS 46
4.6 MODELING IN READDY 46
4.7 CONCLUSIONS 48
5
READDY IN THE CONTEXT OF OTHER PBRD METHODS 51
5.1 FOUR LEVELS OF MODELING DETAIL IN PARTICLE-BASED AP
PROACHES 51
5.2 COMPARISON OF PBRD SIMULATION TOOLS 53
5.3 REACTION-DIFFUSION AT MULTIPLE SCALES 58
6 ROD CELL VISION 65
6.1 THE ROD CELL PHOTOACTIVATION CASCADE 65
6.2 OPEN QUESTIONS AND DEBATES 66
7
MODELING RHODOPSIN-G PROTEIN KINETICS 73
7.1 HISTORY OF COMPUTATIONAL MODELING ON THE SYSTEM 73
7.2 PBRD MODEL OF PHOTOTRANSDUCTION 75
7.3 FREE DIFFUSION SCENARIO 90
7.4 EXISTENCE OF RG PRE-COMPLEXES 95
7.5 EXISTENCE OF ROWS OF RHODOPSIN DIMERS 98
7.6 CONCLUSION 101
8 RHODOPSIN ARCHITECTURE CONTROLS PHOTOTRANSDUC
TION KINETICS IO7
8.1 RHODOPSIN IS ARRANGED AS DIMERS, ROWS, AND TRACKS
107
8.2 THEORETICAL MODELING OF TRACKS 109
8.3 TRACKS LEAD TO BIPHASIC G* PRODUCTION KINETICS 1X1
8.4 DISCUSSION 114
9
PERSPECTIVE ON REACTION-DIFFUSION SIMULATIONS IN
BIOLOGY 119
HTTP://D-NB.INFO/1062554647
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| spelling | Schöneberg, Johannes Verfasser aut Reaction-Diffusion Dynamics in biological systems Johannes Schöneberg 2014 XII, 149 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Zsfassung in engl. Sprache Berlin, FU, Diss., 2014 (DE-588)4113937-9 Hochschulschrift gnd-content DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=027807001&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Schöneberg, Johannes Reaction-Diffusion Dynamics in biological systems |
| subject_GND | (DE-588)4113937-9 |
| title | Reaction-Diffusion Dynamics in biological systems |
| title_auth | Reaction-Diffusion Dynamics in biological systems |
| title_exact_search | Reaction-Diffusion Dynamics in biological systems |
| title_full | Reaction-Diffusion Dynamics in biological systems Johannes Schöneberg |
| title_fullStr | Reaction-Diffusion Dynamics in biological systems Johannes Schöneberg |
| title_full_unstemmed | Reaction-Diffusion Dynamics in biological systems Johannes Schöneberg |
| title_short | Reaction-Diffusion Dynamics in biological systems |
| title_sort | reaction diffusion dynamics in biological systems |
| topic_facet | Hochschulschrift |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=027807001&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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