Computational methods in synthetic biology:
Gespeichert in:
| Weitere Verfasser: | |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
New York [u.a.]
Humana Press
2015
|
| Schriftenreihe: | Methods in molecular biology
1244 |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XI, 358 S. Ill., graph. Darst. |
| ISBN: | 9781493918775 |
Internformat
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Datensatz im Suchindex
| _version_ | 1804152646828818432 |
|---|---|
| adam_text | Titel: Computational methods in synthetic biology
Autor: Marchisio, Mario Andrea
Jahr: 2015
Contents
Preface.................................................................... v
Contributors............................................................... ix
Part I Component Design
1 Computational Protein Design Methods for Synthetic Biology.............. 3
Pablo Carbonell and Jean-Yves Trosset
2 Computer-Aided Design of DNA Origami Structures...................... 23
Denis Selnihhin and Ebbe Sloth Andersen
3 Computational Design of RNA Parts, Devices, and Transcripts
with Kinetic Folding Algorithms Implemented on Multiprocessor Clusters ... 45
Tim Thimmaiah, William E. Voje Jr., and James M. Carothers
4 Regulatory RNA Design Through Evolutionary Computation
and Strand Displacement............................................... 63
William Rostain, Thomas E. Landrain, Guillermo Rodrigo,
and Alfonso Jaramillo
Part II Circuit Design
5 Programming Languages for Circuit Design.............................. 81
Michael Pedersen and Boyan Yordanov
6 Kappa Rule-Based Modeling in Synthetic Biology......................... 105
John Wilson-Kanamori, Vincent Danos, Ty Thomson,
and Ricardo Honorato-Zimmer
7 Modular Design of Synthetic Gene Circuits
with Biological Parts and Pools......................................... 137
Mario Andrea Marchisio
8 Computationally Guided Design of Robust Gene Circuits.................. 167
NajafA. Shah and Casim A. Sarkar
9 Chemical Master Equation Closure for Computer-Aided
Synthetic Biology...................................................... 179
Patrick Smadbeck and Yiannis N. Kaznessis
10 Feedback Loops in Biological Networks.................................. 193
Elisa Franco and Kate E. Galloway
Part III Circuit Analysis and Simulations
11 Efficient Analysis Methods in Synthetic Biology........................... 217
Curtis Madsen, Chris Myers, Nicholas Roehner, Chris Winstead,
and Zhen Zhang
12 Using Computational Modeling and Experimental Synthetic
Perturbations to Probe Biological Circuits................................ 259
Joshua R Porter and Eric Batchelor
vii
viii
Contents
13 In Silico Control of Biomolecular Processes.............................. 277
Jannis Uhlendorf Agnes Miermont, Thierry Delaveau,
Gilles Charvin, François Fages, Samuel Bottani, Pascal Hersen,
and Gregory Batt
14 Stochastic Modular Analysis for Gene Circuits: Interplay Among
Retroactivity, Nonlinearity, and Stochasticity.............................. 287
Kyung Hyuk Kim and Herbert M. Sauro
Part IV Distributed Systems and Automation
15 Distributed Model Construction with Virtual Parts........................ 301
Michael T. Cooling and Tommy Tu
16 The Synthetic Biology Open Language.................................. 323
Chris Myers, Kevin Clancy, Goksel Misirli, Ernst Oberortner,
Matthew Pocock, Jacqueline Quinn, Nicholas Roehner,
and Herbert M. Sauro
17 Computational Methods for the Construction, Editing,
and Error Correction of DNA Molecules and Their Libraries............... 337
Ofir Raz and Tuval Ben Yehezkel
Index..................................................................... 353
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| indexdate | 2024-07-10T01:14:02Z |
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| isbn | 9781493918775 |
| language | English |
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| series | Methods in molecular biology |
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| spelling | Computational methods in synthetic biology Mario Andrea Marchisio New York [u.a.] Humana Press 2015 XI, 358 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Methods in molecular biology 1244 Springer protocols Marchisio, Mario Andrea edt Methods in molecular biology 1244 (DE-604)BV035362695 1244 HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=027593258&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Computational methods in synthetic biology Methods in molecular biology |
| title | Computational methods in synthetic biology |
| title_auth | Computational methods in synthetic biology |
| title_exact_search | Computational methods in synthetic biology |
| title_full | Computational methods in synthetic biology Mario Andrea Marchisio |
| title_fullStr | Computational methods in synthetic biology Mario Andrea Marchisio |
| title_full_unstemmed | Computational methods in synthetic biology Mario Andrea Marchisio |
| title_short | Computational methods in synthetic biology |
| title_sort | computational methods in synthetic biology |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=027593258&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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