Quantum effects in biology:
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| Format: | Book |
|---|---|
| Language: | English |
| Published: |
Cambridge
Cambridge Univ. Press
2014
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| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Item Description: | Hier auch später erschienene, unveränderte Nachdrucke |
| Physical Description: | XIX, 399 S. graph. Darst. |
| ISBN: | 9781107010802 1107010802 |
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| 245 | 1 | 0 | |a Quantum effects in biology |c ed. by M. Mohseni ... |
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Record in the Search Index
| _version_ | 1804152386909896704 |
|---|---|
| adam_text | QUANTUM EFFECTS IN BIOLOGY
Edited by
M MOHSENI
Google
Y OMAR
Instituto de Telecomunicaqdes and ISEG, University of Lisbon
G ENGEL
University of Chicago
M B PLENIO
Ulrti University
CAMBRIDGE
UNIVERSITY PRESS
Contents
Foreword page x
Contributors xiii
Preface xvii
Part I Introduction
1 Quantum biology: introduction 3
GRAHAMRFLEMINGANDGREGORYDSCHOLES
f
1 1 Introduction 3
1 2 Excited states in biology 4
1 3 Light particles and tunnelling 7
1 4 Radical pairs 8
1 5 Questions for the present 9
1 6 Some wide-reaching questions 12
2 Open quantum system approaches to biological systems 14
ALIREZASHABANI,MASOUDMOHSENI,SEOGJOOJANG,AKIHITO
ISHIZAKI,MARTINPLENIO,PATRICKREBENTROST,ALAN
ASPURU-GUZIK,JIANSHUCAO,SETHLLOYDANDROBERTSILBEY
21 Quantum mechanics concepts and notations 15
2 2 Open quantum systems: dynamical map approach 17
2 3 Open quantum systems: master equation approach 21
2 4 Formally exact QME 22
2 5 QME in the weak system-bath coupling limit 24
2 6 QME for weak coupling to a Markovian bath 26
2 7 QMEs beyond weak and Markovian limits 28
2 8 Second-order cumulant time-non-local equation and
its hierarchical representation 33
29A post-perturbative time convolution QME 35
2 10 QME in the polaron picture 38
v
V I Contents
2 11 Path integral techniques 44
2 12 DMRG based approaches 47
3 Generalized Forster resonance energy transfer 53
SEOGJOOJANG,HODAHOSSEIN-NEJADAND
GREGORYDSCHOLES
31 Introduction 53
3 2 Forster s rate expression: a complete derivation 56
3 3 Transition density cube method 62
3 4 Generalized Forster theories 65
3 5 Important computational issues in an actual application 72
3 6 Applications of MC-FRET 77
3 7 Summary 81
4 Principles of multi-dimensional electronic spectroscopy 82
TOMASMANCAL
41 Photo-induced dynamics of molecular systems 82
4 2 Non-linear response of multi-state systems 89
,4 3 Cumulant expansion of a non-linear response 99
4 4 Selected non-linear spectroscopic methods 106
4 5 Conclusions 119
Part II Quantum effects in bacterial photosynthetic energy transfer
5 Structure, function, and quantum dynamics of
pigment-protein complexes 123
IOANKOSZTINANDKLAUSSCHULTEN
51 Introduction 123
5 2 Light-harvesting complexes from purple bacteria: structure,
function and quantum dynamics 125
5 3 Optical transitions in pigment-protein complexes 131
5 4 Electron transfer in pigment-protein complexes 140
6 Direct observation of quantum coherence 144
GREGORYSENGEL
61 Detecting quantum coherence 144
6 2 Observation of quantum coherence using 2D
electronic spectroscopy 147
6 3 Identifying and characterizing quantum coherence signals 151
6 4 Quantum coherence in reaction centres using two colour
electronic coherence photon echo spectroscopy 155
6 5 Observing quantum coherences at physiological temperatures 156
6 6 Outlook for future measurements of coherence 157
Contents Vll
7 Environment-assisted quantum transport 159
MASOUDMOHSENl,ALANASPURU-GUZIK,PATRICK
REBENTROST,ALIREZASHABANI,SETHLLOYD,
SUSANAFHUELGAANDMARTINBPLENIO
71 Introduction 159
7 2 Master equations for quantum transport 161
7 3 Quantum transport in a two-chromophore system 162
7 4 The principles of noise-assisted quantum transport 164
7 5 Quantum transport in the Fenna-Matthews-Olson
protein complex 167
7 6 Optimality and robustness of quantum transport 170
7 7 Conclusion 175
Part III Quantum effects in higher organisms and applications
8 Excitation energy transfer and energy conversion in photosynthesis 179
ELISABETROMERO,VLADIMIRINOVODEREZHKIN
ANDRIENKVANGRONDELLE
81 Photosynthesis 179
8 2 Photosynthetic energy conversion: charge separation 180
8 3 Light-harvesting 190
9 Electron transfer in proteins 198
SPIROSSSKOURTIS
91 Introduction 198
9 2 The rate for a single-step electron transfer reaction mediated
by elastic through-bridge tunnelling 201
9 3 Dependence of tunnelling on protein structure: tunnelling
pathways and their interferences 205
9 4 Tunnelling matrix element fluctuations in deep-tunnelling
ET reactions 208
9 5 Vibrational quantum effects and inelastic tunnelling 211
9 6 Biological ET chains with tunnelling and hopping steps
through the protein medium 214
9 7 Conclusions 216
9 8 Acknowledgements 217
10 A chemical compass for bird navigation 218
ILIAASOLOV YOV,THORSTENRITZ,KLAUSSCHULTEN
ANDPETERJHORE
10 1 Introduction 218
10 2 Theoretical basis for a chemical compass 221
Contents
10 3 In vitro magnetic field effects on radical pair reactions
10 4 Evidence for a radical pair mechanism in birds
10 5 Conclusion
Quantum biology of retinal
KLAUSSCHULTENANDSHIGEHIKOHAYASHI
11 1 Introduction
11 2 Retinal in rhodopsin and bacteriorhodopsin
11 3 Quantum physics of excited state dynamics
11 4 Regulation of photochemical processes for
biological function
11 5 Potential energy crossing and conical intersection
11 6 Electronic structure of protonated Schiff base retinal
11 7 Mechanism of spectral tuning in rhodopsins
11 8 Photoisomerization of retinal in rhodopsins
11 9 Summary and outlook
11 10 Acknowledgement
Quantum vibrational effects on sense of smell
AMSTONEHAM,LTURIN,JCBROOKESANDAPHORSFIELD
12 1 Phonon assisted tunnelling in olfaction
12 2 Important processes and timescales
12 3 Quantum rate equations
12 4 Putting in numbers
12 5 Can we make predictions?
12 6 Extensions of the theory for enantiomers
A perspective on possible manifestations of entanglement in
biological systems
HANSJBRIEGELANDSANDUPOPESCU
13 1 Introduction
13 2 Entanglement
13 3 Non-local correlations
13 4 Entanglement in biology
13 5 Open driven systems and entanglement
13 6 Conclusions
Design and applications of bio-inspired quantum materials
MOHANSAROVAR,DORTHEMEISELEANDKI!IRGITTAWHALEY
14 1 Potential applications of bio-inspired quantum materials
14 2 Progress in designing biomimetic quantum materials
Contents ix
15 Coherent excitons in carbon nanotubes 335
LEONASVALKUNASANDDARIUSABRAMAVICIUS
15 1 Structure 335
15 2 Electronic properties in 1D systems 335
15 3 Exciton-exciton interactions 339
15 4 Non-linear optical response of excitons 343
15 5 Simulations of intensity-dependent 3PEPS 345
15 6 Discussion and conclusions 347
15 7 Acknowledgement 349
References 350
Index 396
f
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| spelling | Quantum effects in biology ed. by M. Mohseni ... Cambridge Cambridge Univ. Press 2014 XIX, 399 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier Hier auch später erschienene, unveränderte Nachdrucke Quantum biochemistry Quantenbiologie (DE-588)4176596-5 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Quantenbiologie (DE-588)4176596-5 s DE-188 Mohseni, Masoud Sonstige (DE-588)1057035610 oth HEBIS Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=027427064&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Quantum effects in biology Quantum biochemistry Quantenbiologie (DE-588)4176596-5 gnd |
| subject_GND | (DE-588)4176596-5 (DE-588)4143413-4 |
| title | Quantum effects in biology |
| title_auth | Quantum effects in biology |
| title_exact_search | Quantum effects in biology |
| title_full | Quantum effects in biology ed. by M. Mohseni ... |
| title_fullStr | Quantum effects in biology ed. by M. Mohseni ... |
| title_full_unstemmed | Quantum effects in biology ed. by M. Mohseni ... |
| title_short | Quantum effects in biology |
| title_sort | quantum effects in biology |
| topic | Quantum biochemistry Quantenbiologie (DE-588)4176596-5 gnd |
| topic_facet | Quantum biochemistry Quantenbiologie Aufsatzsammlung |
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