Ecological biochemistry: environmental and interspecies interactions
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| Format: | Buch |
| Sprache: | English |
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Weinheim
Wiley-VCH
2015
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| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XXV, 413 Seiten Illustrationen, Diagramme |
| ISBN: | 9783527316502 9783527686063 |
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| 245 | 1 | 0 | |a Ecological biochemistry |b environmental and interspecies interactions |c edited by Gerd-Joachim Krauss and Dietrich H. Nies |
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Datensatz im Suchindex
| _version_ | 1804152111035842560 |
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| adam_text | VII
CONTENTS
LIST OF CONTRIBUTORS XVII
FOREWORD XXI
PREFACE XXIII
COMPANION WEBSITE XXV
PART I: BASICS OF LIFE I
1 BASIC BIOCHEMICAL ROOTS 3
DIETRICH H. NIES
1.1 CHEMISTRY AND PHYSICS OF LIFE 3
1.2 ENERGY AND TRANSPORT 3
1.3 BASIC BIOCHEMISTRY 4
2 SPECIALIZED PLANT METABOLITES: DIVERSITY AND BIOSYNTHESIS IS
ALAIN TISSIER,
JORG ZIEGLER,
AND THOMAS
VOGT
2.1 METABOLITE DIVERSITY 15
2.2 MAJOR CLASSES OF PLANT SPECIALIZED COMPOUNDS 16
2.2.1 TERPENOIDS 16
2.2.2 ALKALOID BIOSYNTHESIS 20
2.2.2.1 GENERATION OF METABOLIC DIVERSITY ACROSS ALKALOID CLASSES 21
2.2.2.2 GENERATION OF METABOLIC DIVERSITY WITHIN ALKALOID CLASSES 23
2.2.3 PHENYLPROPANOID METABOLISM 27
2.2.3.1 HYDROXYCINNAMIC ACIDS AND LIGNIN 27
2.2.3.2 FLAVONOIDS, (PRO)ANTHOCYANINS, AND OTHER CHROMOGENIC STRUCTURES
29
2.2.3.3 SIMPLE CG-Q PHENOLICS 30
2.2.4 GLUCOSINOLATES AND CYANOGENIC GLUCOSIDES 31
2.3 SITES OF BIOSYNTHESIS AND ACCUMULATION 33
2.3.1 SPECIALIZED STRUCTURES AND STORAGE 33
2.3.1.1 GLANDULAR TRICHOMES 33
2.3.1.2 INTERNAL ORGANS 33
2.3.1.3 VACUOLES AS SITES OF STORAGE OF SPECIALIZED METABOLITES 34
2.3.2 ALKALOID BIOSYNTHESIS: PATHWAY TRAFFICKING 34
2.4 EVOLUTION OF SPECIALIZED PATHWAY GENES 34
2.4.1 GENE DUPLICATION 34
2.4.2 CHROMOSOMAL CLUSTERS OF SPECIALIZED METABOLITE PATHWAY GENES 36
2.4.3 CONVERGENT EVOLUTION 36
REFERENCES 37
FURTHER READING 37
3 EVOLUTION OF SECONDARY METABOLISM IN PLANTS 39
MICHAEL
WINK
3.1 ORIGINS OF PLANT SECONDARY METABOLISM 39
3.2 EVOLUTIONARY ALTERNATIVES 41
HTTP://D-NB.INFO/1050180933
VIIII CONTENTS
3.3 ENDOPHYTES, SYMBIOTIC, AND ECTOMYCORRHIZAL FUNGI 45
REFERENCES 47
PART II: ECOLOGICAL SIGNATURES OF LIFE 49
4 SYSTEMATICS OF LIFE, ITS EARLY EVOLUTION, AND ECOLOGICAL DIVERSITY 51
DIETRICH H. NIES
4.1 CELLULAR LIFE FORMS AND SUBCELLULAR PARASITES 51
4.2 SUPERKINGDOM ARCHAEA 51
4.2.1 GENERAL FEATURES 51
4.2.2 PHYLUM EURYARCHAEOTA (I. B) 52
4.2.3 PHYLUM CRENARCHAEOTA (I. A) 53
4.2.4 PHYLUM THAUMARCHAEOTA (I. E) 53
4.2.5 OTHER PHYLAE (I.C, I.D) 54
4.3 SUPERKINGDOM BACTERIA 55
4.3.1 GENERAL FEATURES 55
4.3.2 PHYLUM AQUIFICAE (II. B) 56
4.3.3 PHYLAE THERMOTOGAE (II. Z) AND THERMODESULFOBACTERIA (II. Y) 56
4.3.4 CHLOROFLEXI (II. G) 56
4.3.5 CROWN GROUPS OF THE BACTERIA 56
4.3.6 PHYLUM PROTEOBACTERIA (II.U) 56
4.3.7 SUPERPHYLUM BACTEROIDETES/CHLOROBI GROUP (II. D) 57
4.3.8 PHYLUM PLANCTOMYCETES (II. T) 57
4.3.9 GRAM-POSITIVE BACTERIA (II.A, II.O, II.X) 57
4.3.10 PHYLUM CYANOBACTERIA (II.I) 58
4.4 SUPERKINGDOM EUKARYOTA 59
4.4.1 GENERAL FEATURES 59
4.4.2 EXCAVATA-. EXCAVATES (III.O, III.P, III.Q) AND DISCICRISTATES
(III.R, III.S, III.T) 60
4.4.3 CHROMALVEOLATA: KINGDOMS ALVEOLATA (III.K), STRAMENOPILES (III.N),
CRYPTOPHYTA (III.L),
AND HAPTOPHYCEAE (III.M) 62
4.4.4 KINGDOM RHIZARIA (III.G) 64
4.4.5 ARCHAEPLASTIDA (III.H, III.I, III.J) 65
4.4.6 KINGDOM AMOEBOZOA (III.A) 68
4.4.7 KINGDOM OPISTHOKONTA (III.E) 70
ACKNOWLEDGMENT 74
REFERENCES 74
FURTHER READING 74
5 COMMUNITIES AND ECOSYSTEM FUNCTIONING 77
HEINZ RENNENBERG
5.1 COMPETITION FOR, AND DISTRIBUTION OF, LIMITING RESOURCES AS A MEANS
OF ECOSYSTEM
FUNCTIONING 77
5.1.1 LIGHT-CAPTURING STRATEGIES 78
5.1.2 COMPETITION FOR NUTRIENTS 79
5.2 JOINT EXPLOITATION OF LIMITING RESOURCES BY SYMBIOSES 79
5.2.1 MYCORRHIZA 79
5.2.1.1 ARBUSCULAR MYCORRHIZAS (AMS) 80
5.2.1.2 ECTOMYCORRHIZAS (ECMS) 83
5.2.2 SYMBIOTIC N
2
FIXATION
86
5.2.2.1 ESTABLISHMENT OF SYMBIOSIS AND NODULE FORMATION 87
5.2.2.2 MECHANISM OF N
2
FIXATION AND PLANT-MICROBIAL INTERACTIONS IN N NUTRITION
88
5.3 AVOIDANCE OF COMPETITION 89
5.4 FACILITATION MECHANISMS IN COMMUNITIES AND ECOSYSTEM FUNCTIONING 90
REFERENCES 91
FURTHER READING 91
CONTENTS | IX
6 FOOD CHAINS AND NUTRIENT CYCLES 93
FELIX BARLOCHER
AND HEINZ RENNENBERG
6.1 BASIC CONCEPTS 93
6.1.1 FOOD CHAINS AND FOOD WEBS 93
6.1.2 GRAZING VS. DETRITUS FOOD CHAINS AND THE MICROBIAL LOOP 94
6.1.3 ROLE OF PARASITES 95
6.1.4 METABOLIC THEORY AND ECOLOGICAL STOICHIOMETRY 95
6.1.5 TERRESTRIAL VERSUS AQUATIC HABITATS 95
6.1.6 GENERAL PRINCIPLES OF NUTRIENT CYCLES 96
6.2 AQUATIC SYSTEMS 97
6.2.1 IMPORTANT PHYSICOCHEMICAL PROPERTIES OF WATER 98
6.2.2 MARINE SYSTEMS 99
6.2.2.1 DENSITY GRADIENTS AND PYCNOCLINES 99
6.2.2.2 THE EUPHOTIC ZONE 99
6.2.2.3 THE PELAGIAL ZONE 99
6.2.2.4 HYDROTHERMAL VENTS AND METHANE SEEPS 100
6.2.2.5 THE BENTHIC HABITAT 100
6.2.2.6 MANGROVES 100
6.2.2.7 SALT MARSHES 101
6.2.2.8 CORAL REEFS 102
6.2.3 FRESHWATER SYSTEMS 102
6.2.3.1 TEMPERATURE GRADIENTS AND CIRCULATION IN LAKES 102
6.2.3.2 OXYGENIC AND ANOXYGENIC PHOTOSYNTHESIS 103
6.2.3.3 THE FRESHWATER PELAGIAL ZONE 103
6.2.3.4 THE FRESHWATER BENTHIC ZONE AND FRESHWATER MARSHES 103
6.2.3.5 RUNNING WATERS 104
6.2.4 NUTRIENT CYCLES 106
6.2.4.1 THE NITROGEN CYCLE 106
6.2.4.2 THE SULFUR CYCLE 107
6.2.4.3 THE PHOSPHORUS CYCLE 107
6.2.4.4 THE CARBON CYCLE 109
6.3 TERRESTRIAL SYSTEMS 109
6.3.1 TROPHIC CASCADES 109
6.3.2 COMMUNITY DYNAMICS AND ITS REGULATION 111
6.3.3 NUTRIENT CYCLES 112
6.3.3.1 THE NITROGEN CYCLE 113
6.3.3.2 THE SULFUR CYCLE 116
6.3.3.3 THE PHOSPHORUS CYCLE 119
6.3.3.4 THE CARBON CYCLE 120
REFERENCES 120
FURTHER READING 120
PART III: BIOCHEMICAL RESPONSE TO PHYSIOCHEMICAL STRESS (ABIOTIC STRESS)
123
7 INFORMATION PROCESSING AND SURVIVAL STRATEGIES 12S
INGO HEILMANN
7.1 THE STRESS CONCEPT-PLANTS AND THEIR ENVIRONMENT 125
7.2 PLANT SIGNAL TRANSDUCTION AND THE INDUCTION OF STRESS RESPONSES 126
7.3 PHYTOHORMONES 130
7.3.1 FUNCTIONALITY OF PHYTOHORMONES 130
7.3.2 SIGNAL TRANSDUCTION THROUGH NUCLEAR DEREPRESSION OF GENE
EXPRESSION 131
7.3.2.1 AUXINS 131
7.3.2.2 JASMONIC ACID 133
7.3.2.3 GIBBERELLINS 135
7.3.3 SIGNAL TRANSDUCTION THROUGH OTHER, NONMEMBRANE-ASSOCIATED
RECEPTORS 136
7.3.3.1 ABSCISIC ACID 136
X I CONTENTS
7.3.3.2 SALICYLIC ACID 137
7.3.4 SIGNAL TRANSDUCTION THROUGH TRANSMEMBRANE-RECEPTORS 138
7.3.4.1 CYTOKININS 138
7.3.4.2 ETHYLENE 139
7.3.4.3 BRASSINOSTEROIDS 141
7.4 OTHER SIGNALING MOLECULES 141
7.4.1 PHYTOCHROMES AND CRYPTOCHROMES 141
7.4.2 STRIGOLACTONES AND NODULATION FACTORS 141
7.4.3 REACTIVE OXYGEN SPECIES AND NITRIC OXIDE 142
7.4.4 PEPTIDE SIGNALS 143
7.4.5 VOLATILE SIGNALS 143
7.4.6 POLYAMINES 145
1A1 PHOSPHOINOSITIDES AND INOSITOLPOLYPHOSPHATES 145
7.4.8 GUANINE NUCLEOTIDE-BINDING PROTEINS 146
7A.9 ION CHANNELS 148
7.5 SIGNAL TRANSDUCTION BY PROTEIN PHOSPHORYLATION 148
7.6 THE CALCIUM SIGNALING NETWORK 149
7.7 STRESS-INDUCED MODULATION OF GENE EXPRESSION BY MICRORNAS 150
REFERENCES 152
FURTHER READING 152
8 OXYGEN 155
KARL-JOSEFDIETZ
8.1 CHEMICAL NATURE OF OXYGEN AND REACTIVE OXYGEN SPECIES 155
8.2 OXYGEN METABOLISM 156
8.2.1 PHOTOSYNTHESIS AND OXYGEN METABOLISM 156
8.2.2 MITOCHONDRION AND RESPIRATION 158
8.2.3 OXYGEN METABOLISM IN PEROXISOMES 159
8.2.4 MEMBRANE-ASSOCIATED OXYGEN METABOLISM 159
8.3 OXYGEN SENSING 160
8.4 ANTIOXIDANT DEFENSE 161
8.5 REACTIVE OXYGEN SPECIES IN ABIOTIC STRESSES 162
8.6 REACTIVE OXYGEN SPECIES IN BIOTIC INTERACTIONS 164
8.7 CELL SIGNALING FUNCTION OF REACTIVE OXYGEN SPECIES 165
REFERENCES 168
FURTHER READING 168
9 LIGHT 171
THOMAS KRETSCH
9.1 PRINCIPLES OF LIGHT DETECTION AND PHOTORECEPTOR FUNCTION 171
9.1.1 MODULAR DOMAIN STRUCTURE OF PHOTORECEPTORS 171
9.1.2 IDENTIFICATION AND CLASSIFICATION OF PHOTORECEPTOR MOLECULES 171
9.1.3 COPL-CONTAINING E3 UBIQUITIN LIGASE COMPLEXES: CENTRAL COMPONENTS
OF LIGHT
SIGNALING IN PLANTS 173
9.2 SENSING OF UV-B LIGHT 175
9.2.1 EFFECTS OF UV-B LIGHT 175
9.2.2 UV-B LIGHT RECEPTION AND SIGNAL TRANSDUCTION 175
9.3 THE LOV DOMAIN: A VARIABLE MOLECULAR BUILDING BLOCK OF MANY BLUE AND
UV-A
LIGHT SENSORS 176
9.3.1 LOV CHOMOPHOR-BINDING DOMAINS 176
9.3.2 PHOTOTROPINS AND NEOCHROMES 176
9.3.3 ZEITLUPE-LIKE PROTEINS 176
9.3.4 WHITE COLLAR LIGHT SENOSORS 178
9.4 CRYPTOCHROMES 179
9.4.1 PHYSIOLOGICAL FUNCTIONS 179
9.4.2 CRYPTOCHROME STRUCTURE AND LIGHT SIGNALING 179
CONTENTS | XI
9.5 PHYTOCHROMES 180
9.5.1 THE LIGHT SENSOR MODULE OF PHYTOCHROMES 180
9.5.2 PHYSIOLOGICAL FUNCTIONS OF PHYTOCHROMES 181
9.5.3 LIGHT SIGNAL TRANSDUCTION OF PHYTOCHROMES 182
9.5.4 THE UNIQUE FUNCTION OF PHYTOCHROME A 183
9.6 OTHER PHOTORECEPTOR SYSTEMS 185
9.7 FLAVONOID BIOSYNTHESIS IN PLANTS - A MODEL FOR A LIGHT-REGULATED
ADAPTATION
PROCESS 185
9.7.1 FLAVONOIDS AS LIGHT PROTECTORS 185
9.7.2 LIGHT REGULATION OF THE FLAVONOID BIOSYNTHESIS PATHWAY 186
REFERENCES 187
FURTHER READING 188
10 WATER 191
WIEBKE ZSCHIESCHE
AND KLAUS HUMBECK
10.1 WATER: THE ESSENCE OF LIFE 191
10.2 WATER BALANCE IN PLANTS 192
10.2.1 WATER FLOW 192
10.2.2 LOSS OF WATER BY STOMATAL TRANSPIRATION 193
10.3 DROUGHT STRESS 194
10.3.1 DROUGHT STRESS, A WORLDWIDE CHALLENGE 194
10.3.2 CELLULAR DISTURBANCES 194
10.3.3 ADAPTATIONS TO SURVIVE DROUGHT STRESS 194
10.3.4 MOLECULAR MECHANISM OF DROUGHT STRESS TOLERANCE 197
10.3.4.1 DOWNSTREAM SIGNAL TRANSDUCTION 197
10.3.4.2 ROLE OF ABSCISIC ACID 198
10.3.4.3 TRANSCRIPTIONAL CONTROL MECHANISM 198
10.3.4.4 DROUGHT STRESS GENES 199
10.4 COLD STRESS AND FREEZING 200
10.4.1 LOWERING OF TEMPERATURE 200
10.4.2 REQUIREMENTS OF ICE CRYSTAL FORMATION 200
10.4.3 STRATEGIES TO SURVIVE LOW TEMPERATURES 200
10.5 SALINITY 201
10.5.1 SALINITY, AN INCREASING PROBLEM IN AGRICULTURE 201
10.5.2 SALT STRESS ALTERS PLANT FUNCTIONS 201
10.5.3 SALINITY TOLERANCE 202
10.5.4 SIGNAL SENSING AND TRANSCRIPTIONAL AND POSTTRANSCRIPTIONAL
CONTROL 202
10.5.5 TARGET PROCESSES 203
10.6 FLOODING-STRESS 205
10.6.1 CAUSES OF FLOODING 205
10.6.2 EFFECTS ON CELLULAR ENERGY STATUS 205
10.6.3 ACCLIMATION TO HYPOXIA 205
REFERENCES 206
FURTHER READING 206
11 MINERAL DEFICIENCIES 209
11.1 MINERAL REQUIREMENT AND INSUFFICIENCIES 209
EDGAR PEITER
11.1.1 THE ESSENTIALITY OF MINERAL NUTRIENTS FOR PLANTS 209
11.1.2 THE AVAILABILITY OF MINERAL NUTRIENTS IN THE SOIL 211
11.1.3 MINERAL NUTRIENT MOVEMENT TOWARD AND UPTAKE BY THE PLANT ROOT 212
11.1.4 PLANT RESPONSES TO A VARIABLE MINERAL NUTRIENT AVAILABILITY 214
11.1.4.1 NITROGEN 214
11.1.4.2 PHOSPHORUS 215
11.1.4.3 IRON 218
11.1.4.4 ZINC 221
XII
| CONTENTS
11.1.4.5 COPPER 222
11.2 CARNIVOROUS PLANTS AND FUNGI 224
GERD-JOACHIM KRAUSS AND
GUDRUN KRAUSS
11.2.1 HABITATS, DIVERSITY AND EVOLUTION 224
11.2.2 TRAPPING DEVICES 226
11.2.3 PREY DIGESTION AND NUTRIENT UTILIZATION 229
11.2.4 COEVOLUTIONARY STRATEGIES OF THE CARNIVOROUS LIFE STYLE: PITCHER
PLANTS 232
REFERENCES 233
FURTHER READING 234
12 EXCESS OF METALS 237
DIETRICH H. NIES, EVA FREISINGER,
AND GERD-JOACHIM
KRAUSS
12.1 PROPERTIES OF TRANSITION METALS 237
12.2 METAL TRANSPORT THROUGH CELL MEMBRANES 238
12.3 BIOCHEMISTRY OF THE MINOR BIOMETALS: ESSENTIAL, DESIRED, BUT ALSO
TOXIC 240
12.3.1 OXYANIONS: MOLYBDATE AND ITS NEIGHBORS 240
12.3.2 MANGANESE: THE ELECTRON BUFFER 240
12.3.3 TRANSITION METAL CATIONS IN OCTAHEDRAL COMPLEXES 241
12.3.4 IRON: TRANSMITTER OF SINGLE ELECTRONS 241
12.3.5 COBALT AND NICKEL: BETWEEN IRON AND ZINC 242
12.3.6 COPPER: THE OXYGEN-HANDLE 243
12.3.7 ZINC (AND EXCEPTIONALLY CADMIUM): NON REDOX-ACTIVE TRANSITION
METALS 244
12.4 BIOCHEMISTRY OF CHEMICAL ELEMENTS WITHOUT KNOWN BIOLOGICAL
FUNCTIONS 244
12.4.1 CADMIUM AND LEAD 244
12.4.2 THE NOBLE METALS SILVER AND GOLD 245
12.4.3 MERCURY 245
12.4.4 ARSENATE, ARSENITE AND ANTIMONITE 246
12.5 METAL-BINDING PEPTIDES AND PROTEINS INVOLVED IN TRANSITION METAL
HOMEOSTASIS 246
12.5.1 FUNCTION OF INTRACELLULAR METAL-BINDING POLYPEPTIDES 246
12.5.2 COPPER CHAPERONES 246
12.5.3 COG0523 METAL CHAPERONES 246
12.5.4 GLUTATHIONE AND RELATED COMPOUNDS 247
12.5.5 PHYTOCHELATINS 248
12.5.6 METALLOTHIONEINS AND THEIR UBIQUITOUS FEATURES 248
12.6 INTERACTION OF PLANTS AND FUNGI WITH METALS 251
12.6.1 AVOIDANCE AND TOLERANCE MECHANISMS IN PLANTS 251
12.6.2 METAL HYPERACCUMULATORS 252
12.6.3 INTERACTION OF PLANTS WITH INDIVIDUAL METALS 252
12.6.4 AVOIDANCE AND TOLERANCE MECHANISMS IN FUNGI 254
REFERENCES 256
FURTHER READING 256
13 XENOBIOTICS FROM HUMAN IMPACTS 259
MAGALI SOTE
AND DIETMAR SCHLOSSER
13.1 XENOBIOTICS: FROM EMISSION TO CELLULAR UPTAKE 259
13.1.1 EMISSION, DISPERSAL, FATE PROCESSES, AND BIOAVAILABILITY OF
XENOBIOTICS 259
13.1.2 CELLULAR UPTAKE OF XENOBIOTICS 260
13.2 ADVERSE EFFECTS OF XENOBIOTICS: FROM CELLS TO ECOSYSTEMS 265
13.2.1 EFFECTS AT THE LEVEL OF INDIVIDUALS AND BELOW 265
13.2.2 EFFECTS AT HIGHER LEVELS OF BIOLOGICAL ORGANIZATION: POPULATIONS,
COMMUNITIES, AND ECOSYSTEMS 267
13.3 ORGANISMAL RESPONSES: BIOCHEMICAL ELIMINATION OF XENOBIOTICS 268
13.3.1 GENERAL ASPECTS OF BIODEGRADATION AND BIOTRANSFORMATION REACTIONS
268
13.3.2 INITIAL BIOCHEMICAL ATTACK ON XENOBIOTICS - PHASE I REACTIONS 273
13.3.3 CONJUGATE FORMATION FROM FUNCTIONALIZED XENOBIOTICS - PHASE II
REACTIONS 273
CONTENTS | XIII
13.3.4 FURTHER MODIFICATION, EXCRETION, AND DEPOSITION OF XENOBIOTICS
AND THEIR METABOLITES - PHASE III
REACTIONS 274
REFERENCES 274
FURTHER READING 274
PART IV: ORGANISMAL INTERACTIONS (BIOTIC STRESS) 277
14 THE BIOFILM MODE OF LIFE 279
HANS-CURT FLEMMING
14.1 WHAT ARE BIOFILMS? 279
14.2 ENVIRONMENTAL ROLES OF BIOFILMS 280
14.3 LIFE CYCLE OF BIOFILMS 281
14.4 INVESTIGATION OF BIOFILMS 283
14.5 THE MATRIX: EXTRACELLULAR POLYMERIC SUBSTANCES 284
14.5.1 THE EXTRACELLULAR POLYMERIC SUBSTANCES (EPS) 284
14.5.2 PREDATION AND ANTAGONISM 285
14.5.3 VBNC FORMS AND PERSISTERS 285
14.5.4 MOTILITY WITHIN BIOFILMS 285
14.5.5 MATRIX STABILITY 286
14.5.6 GRADIENTS AND HETEROGENEITY IN THE BIOFILM MATRIX 287
14.6 COMMUNICATION IN BIOFILMS 287
14.7 ENHANCED RESISTANCE OF BIOFILM ORGANISMS 288
14.8 EMERGENT PROPERTIES OF THE BIOFILM MODE OF LIFE 290
REFERENCES 291
FURTHER READING 291
15 RHIZOSPHERE INTERACTIONS 293
SILVIA D. SCHREY,
ANTON HARTMANN,
AND RUDIGER HAMPP
15.1 BACTERIAL COMMUNITIES IN THE RHIZOSPHERE 294
15.1.1 PLANT GROWTH PROMOTING RHIZOBACTERIA 294
15.1.2 PLANT DISEASE SUPPRESSION BY RHIZOBACTERIA - INDIRECT PLANT
GROWTH PROMOTION 297
15.1.3 NITROGEN-FIXING PLANT-BACTERIUM SYMBIOSIS 299
15.1.4 ACTINOBACTERIA: PROLIFIC PRODUCERS OF NATURAL COMPOUNDS 300
15.1.5 PLANT PATHOGENIC SOIL BACTERIA 300
15.1.6 PLANT-ASSOCIATED BACTERIA AS (OPPORTUNISTIC) HUMAN PATHOGENS 301
15.2 FUNGI OF THE RHIZOSPHERE 303
15.2.1 MYCORRHIZA: CHEMICAL DIALOGUE BETWEEN PLANTS AND MYCORRHIZAL
FUNGI 303
15.2.2 CHEMICAL CROSS TALK BETWEEN PLANT ROOTS AND PATHOGENIC FUNGI:
SIGNALING INVOLVED IN
RECOGNITION 304
15.2.3 FUNGUS-BACTERIUM INTERACTIONS 305
15.2.3.1 MYCORRHIZA HELPER BACTERIA 306
15.2.3.2 BACTERIAL MYCOPHAGY 306
15.3 PLANT-PLANT INTERACTIONS 306
15.3.1 PLANT-PLANT INTERACTION VIA FUNGAL NETWORKS 307
15.3.2 PARASITIC PLANTS 307
15.3.3 ALLELOPATHY 308
REFERENCES 310
FURTHER READING 310
16 PLANT-ANIMAL DIALOGUES 313
SUSANNE PREIFI,
JORG DEGENHARDT, AND
JONATHAN GERSHENZON
16.1 THE FLOWER POLLINATOR SYSTEM 313
16.1.1 GENERAL ASPECTS 313
16.1.2 FLOWER COLOR 313
16.1.3 NECTAR 317
16.1.4 FLORAL SCENT 317
XIV I CONTENTS
16.1.5 FLOWER POLLINATOR INTERACTIONS ARE GUIDED BY COMPLEX PATTERNS OF
BIOCHEMICAL CUES 318
16.2 ANT-PLANT-FUNGUS MUTUALISM, A THREE-WAY INTERACTION 319
16.3 PHENOLICS IN THE INTERACTION BETWEEN PLANT AND ANIMALS 320
16.3.1 SALICIN - A DEFENSE COMPOUND IN SALIX SPECIES 320
16.3.2 FLAVONOID SIGNALS MODULATE HERBIVORE BEHAVIOR 321
16.4 ALKALOIDS IN THE INTERACTION BETWEEN PLANTS AND ANIMALS 321
16.4.1 THE MONARCH BUTTERFLY 321
16.4.2 OPTIMAL DEFENSE IN THE WILD RAGWORT SENECIA JACOBEA 322
16.4.3 ENDOPHYTES AND PLANT PARASITIC NEMATODES MEDIATE PLANT-HERBIVORE
INTERACTIONS 323
16.4.4 GLUCOSINOLATES ARE PUNGENT ANTIHERBIVORE DEFENSES OF MUSTARDS AND
RELATED PLANT SPECIES 324
16.5 TERPENES IN PLANT DEFENSE 325
16.5.1 MONOTERPENE-BASED DEFENSES OF THYME 325
16.5.2 MAMMALS, WOOD ANTS, AND SCOTS PINE TREES 326
16.5.3 ECOLOGICAL ROLE OF HERBIVORE-INDUCED PLANT VOLATILES 326
16.5.4 TRITROPHIC INTERACTIONS WITH HERBIVORES AND HERBIVORE ENEMIES 326
16.5.5 INTERFERENCE OF PLANT VOLATILE TERPENES WITH INSECT PHEROMONES
328
16.5.6 TERPENE-MEDIATED INTERACTIONS BETWEEN PLANTS AFFECT HERBIVORES
329
REFERENCES 330
FURTHER READING 330
PART V: THE METHODOLOGICAL PLATFORM 331
17 SENSING OF POLLUTANT EFFECTS AND BIOREMEDIATION 333
GERD-JOACHIM KRAUSS AND DIETMAR
SCHLOSSER
17.1 POLLUTANT EFFECT AND APPROACHES TO CHARACTERIZE EXPOSURE 333
17.2 ECOLOGICAL RESTORATION AND BIOREMEDIATION 335
17.2.1 BIOLOGICAL ECOSYSTEM COMPONENTS MITIGATING ENVIRONMENTAL
POLLUTION 335
17.2.2 PRESENT AND FUTURE DIRECTIONS 338
REFERENCES 339
FURTHER READING 340
18 THE-OMICS TOOL BOX 343
DIRKSCHAUMLOFFEL
18.1 GENOMICS 343
18.1.1 FIRST-GENERATION SEQUENCING 343
18.1.2 NEXT-GENERATION SEQUENCING (NGS) 344
18.1.2.1 PYROSEQUENCING: 454/ROCHE FLX* PYROSEQUENCER 344
18.1.2.2 REVERSIBLE DYE TERMINATOR TECHNOLOGY: ILLUMINA GENOME ANALYZER*
344
18.1.2.3 SEQUENCING BY LIGATION: APPLIED BIOSYSTEMS SOLID* SEQUENCER 345
18.1.3 UNDERSTANDING THE GENOME: GENES AND THEIR FUNCTIONS 345
18.2 TRANSCRIPTOMICS 345
18.2.1 DNA MICROARRAYS 346
18.2.2 TRANSCRIPTOME SEQUENCING BY NGS PLATFORMS 346
18.3 PROTEOMICS 346
18.3.1 PROTEOMIC STRATEGIES 347
18.3.1.1 SAMPLE PREPARATION FOR PROTEOMICS 347
18.3.1.2 PROTEIN SEPARATION- 347
18.3.1.3 DIFFERENTIAL PROTEOME ANALYSIS 348
18.3.1.4 IDENTIFICATION OF PROTEINS 348
18.3.1.5 ANALYTICAL PROTEIN MICROARRAYS 348
18.3.1.6 BOTTOM-UP PROTEOMICS 348
18.3.1.7 SHOTGUN PROTEOMICS 349
18.3.1.8 TOP-DOWN PROTEOMICS 350
18.3.1.9 DE NOVO SEQUENCING OF PROTEINS 350
18.3.2 PROTEIN MASS SPECTROMETRY 350
18.3.2.1
18.3.2.2
18.3.2.3
18.3.2.4
18.3.3
18.3.3.1
18.3.3.2
18.3.3.3
18.3.4
18.3.4.1
18.3.4.2
18.3.5
18.4
18.4.1
18.4.2
18.4.3
18.5
18.5.1
18.5.1.1
18.5.1.2
18.5.1.3
18.5.1.4
18.5.2
18.5.3
19
19.1
19.1.1
19.1.1.1
19.1.1.2
19.1.1.3
19.1.2
19.1.2.1
19.1.2.2
19.1.2.3
19.1.2.4
19.1.2.5
19.1.2.6
19.1.3
19.1.3.1
19.1.3.2
19.1.4
19.2
19.2.1
19.2.2
19.3
19.3.1
19.3.2
19.3.3
ION SOURCES FOR BIOMOLECULES 350
MASS ANALYZERS 351
TANDEM MASS SPECTROMETRY 352
ELEMENT MASS SPECTROMETRY: ICP MS 353
QUANTITATIVE PROTEOMICS 354
LABEL-FREE RELATIVE QUANTIFICATION 354
CHEMICAL AND METABOLIC LABELING WITH STABLE ISOTOPES AND METALS FOR
RELATIVE
QUANTIFICATION 354
ABSOLUTE QUANTIFICATION STRATEGIES 354
DETERMINATION OF THE 3D PROTEIN STRUCTURE AND FUNCTIONAL EVALUATION 355
X-RAY CRYSTALLOGRAPHY AND PROTEIN NMR 355
FUNCTIONAL PROTEIN MICROARRAYS 355
META-OMICS APPROACHES 355
METABOLOMICS 356
ANALYTICAL STRATEGIES 356
METABOLOMICS IN SINGLE CELLS 358
INTEGRATING -OMICS TECHNIQUES 360
METALLOMICS 360
ANALYTICAL STRATEGIES 361
ELEMENT MASS SPECTROMETRY (ICP MS) 361
COUPLING TECHNIQUES 361
ELEMENTAL IMAGING TECHNIQUES 361
BIOINFORMATIC APPROACHES 362
FUNCTIONAL CONNECTIONS BETWEEN DNA, PROTEINS, METABOLITES, AND METALS
362
METALLOTHIOLOMICS 362
REFERENCES 365
FURTHER READING 365
MICROSCOPE TECHNIQUES AND SINGLE CELL ANALYSIS 367
BETTINA HAUSE
AND GERD
HAUSE
VISUALIZATION PRINCIPLES 367
LIGHT MICROSCOPY 367
BRIGHT FIELD MICROSCOPY 367
DARK FIELD MICROSCOPY 370
FLUORESCENCE MICROSCOPY 370
ADVANCED FLUORESCENCE TECHNIQUES/GENERATION OF OPTICAL SECTIONS 370
CONFOCAL LASER SCANNING MICROSCOPY (CLSM) 370
MULTIPHOTON MICROSCOPY 371
SPINNING DISK MICROSCOPY 371
STIMULATED EMISSION DEPLETION (STED), 4PI MICROSCOPY, AND
4PI-STED-MICROSCOPY 371
PHOTO-ACTIVATED LOCALIZATION MICROSCOPY (PAL-M)/STOCHASTIC OPTICAL
RECONSTRUCTION MICROSCOPY
(STORM) 371
STRUCTURED ILLUMINATION MICROSCOPY (SIM) 372
ELECTRON MICROSCOPY 372
TRANSMISSION ELECTRON MICROSCOPY (TEM) 372
SCANNING ELECTRON MICROSCOPY (SEM) 373
SCANNING PROBE MICROSCOPY 373
PREPARATION OF BIOLOGICAL MATERIALS 373
CHEMICAL FIXATION 373
PHYSICAL FIXATION/CRYOFIXATION 374
DETECTION METHODS - FROM MACROMOLECULES TO IONS 375
HISTOLOGICAL STAINING 375
AUTORADIOGRAPHY 375
IMMUNOCYTOCHEMISTRY (IC) 376
XVII
CONTENTS
19.3.4 IN SITU HYBRIDIZATION (ISH) 377
19.3.5 REPORTER MOLECULES IN TRANSGENIC APPROACHES 378
19.4 SINGLE CELL TECHNOLOGIES 380
REFERENCES 382
FURTHER READING 382
GLOSSARY 383
INDEX 397
|
| any_adam_object | 1 |
| author2 | Krauß, Gerd-Joachim Nies, Dietrich H. |
| author2_role | edt edt |
| author2_variant | g j k gjk d h n dh dhn |
| author_GND | (DE-588)1059871688 |
| author_facet | Krauß, Gerd-Joachim Nies, Dietrich H. |
| building | Verbundindex |
| bvnumber | BV041793329 |
| classification_rvk | RB 10115 WD 4550 |
| classification_tum | BIO 210f |
| ctrlnum | (OCoLC)893893737 (DE-599)BSZ400273020 |
| dewey-full | 580 |
| dewey-hundreds | 500 - Natural sciences and mathematics |
| dewey-ones | 580 - Plants |
| dewey-raw | 580 |
| dewey-search | 580 |
| dewey-sort | 3580 |
| dewey-tens | 580 - Plants |
| discipline | Biologie Geographie |
| format | Book |
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| genre | (DE-588)4143413-4 Aufsatzsammlung gnd-content |
| genre_facet | Aufsatzsammlung |
| id | DE-604.BV041793329 |
| illustrated | Illustrated |
| indexdate | 2024-07-10T01:05:31Z |
| institution | BVB |
| isbn | 9783527316502 9783527686063 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-027238904 |
| oclc_num | 893893737 |
| open_access_boolean | |
| owner | DE-11 DE-703 DE-1028 DE-355 DE-BY-UBR DE-29T DE-29 DE-634 |
| owner_facet | DE-11 DE-703 DE-1028 DE-355 DE-BY-UBR DE-29T DE-29 DE-634 |
| physical | XXV, 413 Seiten Illustrationen, Diagramme |
| publishDate | 2015 |
| publishDateSearch | 2015 |
| publishDateSort | 2015 |
| publisher | Wiley-VCH |
| record_format | marc |
| spelling | Ecological biochemistry environmental and interspecies interactions edited by Gerd-Joachim Krauss and Dietrich H. Nies Weinheim Wiley-VCH 2015 XXV, 413 Seiten Illustrationen, Diagramme txt rdacontent n rdamedia nc rdacarrier Ökologische Biochemie (DE-588)4121406-7 gnd rswk-swf Synökologie (DE-588)4184249-2 gnd rswk-swf Pflanzen (DE-588)4045539-7 gnd rswk-swf Ökologische Chemie (DE-588)4135167-8 gnd rswk-swf Biochemie (DE-588)4006777-4 gnd rswk-swf Biogeochemie (DE-588)4125243-3 gnd rswk-swf Umwelt (DE-588)4061616-2 gnd rswk-swf Autökologie (DE-588)4143684-2 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Pflanzen (DE-588)4045539-7 s Ökologische Biochemie (DE-588)4121406-7 s DE-604 Umwelt (DE-588)4061616-2 s Ökologische Chemie (DE-588)4135167-8 s Biochemie (DE-588)4006777-4 s Biogeochemie (DE-588)4125243-3 s Autökologie (DE-588)4143684-2 s Synökologie (DE-588)4184249-2 s 1\p DE-604 Krauß, Gerd-Joachim (DE-588)1059871688 edt Nies, Dietrich H. edt Erscheint auch als Online-Ausgabe, EPUB 978-3-527-68600-1 Erscheint auch als Online-Ausgabe, MOBI 978-3-527-68598-1 Erscheint auch als Online-Ausgabe, PDF 978-3-527-68599-8 DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=027238904&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis 1\p cgwrk 20201028 DE-101 https://d-nb.info/provenance/plan#cgwrk |
| spellingShingle | Ecological biochemistry environmental and interspecies interactions Ökologische Biochemie (DE-588)4121406-7 gnd Synökologie (DE-588)4184249-2 gnd Pflanzen (DE-588)4045539-7 gnd Ökologische Chemie (DE-588)4135167-8 gnd Biochemie (DE-588)4006777-4 gnd Biogeochemie (DE-588)4125243-3 gnd Umwelt (DE-588)4061616-2 gnd Autökologie (DE-588)4143684-2 gnd |
| subject_GND | (DE-588)4121406-7 (DE-588)4184249-2 (DE-588)4045539-7 (DE-588)4135167-8 (DE-588)4006777-4 (DE-588)4125243-3 (DE-588)4061616-2 (DE-588)4143684-2 (DE-588)4143413-4 |
| title | Ecological biochemistry environmental and interspecies interactions |
| title_auth | Ecological biochemistry environmental and interspecies interactions |
| title_exact_search | Ecological biochemistry environmental and interspecies interactions |
| title_full | Ecological biochemistry environmental and interspecies interactions edited by Gerd-Joachim Krauss and Dietrich H. Nies |
| title_fullStr | Ecological biochemistry environmental and interspecies interactions edited by Gerd-Joachim Krauss and Dietrich H. Nies |
| title_full_unstemmed | Ecological biochemistry environmental and interspecies interactions edited by Gerd-Joachim Krauss and Dietrich H. Nies |
| title_short | Ecological biochemistry |
| title_sort | ecological biochemistry environmental and interspecies interactions |
| title_sub | environmental and interspecies interactions |
| topic | Ökologische Biochemie (DE-588)4121406-7 gnd Synökologie (DE-588)4184249-2 gnd Pflanzen (DE-588)4045539-7 gnd Ökologische Chemie (DE-588)4135167-8 gnd Biochemie (DE-588)4006777-4 gnd Biogeochemie (DE-588)4125243-3 gnd Umwelt (DE-588)4061616-2 gnd Autökologie (DE-588)4143684-2 gnd |
| topic_facet | Ökologische Biochemie Synökologie Pflanzen Ökologische Chemie Biochemie Biogeochemie Umwelt Autökologie Aufsatzsammlung |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=027238904&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| work_keys_str_mv | AT kraußgerdjoachim ecologicalbiochemistryenvironmentalandinterspeciesinteractions AT niesdietrichh ecologicalbiochemistryenvironmentalandinterspeciesinteractions |