Membrane structural biology: with biochemical and biophysical foundations
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| Main Author: | |
|---|---|
| Format: | Book |
| Language: | English |
| Published: |
Cambridge [u.a.]
Cambridge Univ. Press
2014
|
| Edition: | 2. ed. |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Physical Description: | XIV, 411 S. zahlr. Ill., graph. Darst. |
| ISBN: | 9781107030633 9780521856553 |
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| 245 | 1 | 0 | |a Membrane structural biology |b with biochemical and biophysical foundations |c Mary Luckey |
| 250 | |a 2. ed. | ||
| 264 | 1 | |a Cambridge [u.a.] |b Cambridge Univ. Press |c 2014 | |
| 300 | |a XIV, 411 S. |b zahlr. Ill., graph. Darst. | ||
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| 650 | 4 | |a Cell Membrane |x physiology | |
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| adam_text | Titel: Membrane structural biology
Autor: Luckey, Mary
Jahr: 2014
CONTENTS
List of boxes
xiii
Membrane solubilization
49
Preface
xiv
Lipid removal
Model membranes
51
51
1 INTRODUCTION
1
Monolayers
Planar bilayers
52
54
General features of membranes
1
Patch clamps
57
Paradigm 1: the amphiphilic molecules in
Supported bilayers
57
membranes assemble spontaneously due
Liposomes from SUVs to GUVs
60
to the hydrophobic effect
4
Multilamellar vesicles
60
Paradigm 2: the Fluid Mosaic Model
Small unilamellar vesicles
61
describes the membrane structure
5
Large unilamellar vesicles
61
A shift in the paradigm: biomembranes have
Short-chain/long-chain unilamellar
lateral domains that form rafts
9
vesicles
62
A view for the future: dynamic protein
Giant unilamellar vesicles
62
complexes crowd the membrane
Mixed micelles and bicelles
63
interior and extend its borders
9
Blebs and blisters
64
For further reading
13
Nanodiscs
66
Conclusion
67
2 THE DIVERSITY OF MEMBRANE
For further reading
67
UPIDS
14
4 PROTEINS IN 0R AT THE BILAYER
69
The acyl chains
14
Complex lipids
17
Classes of proteins that interact with
Phospholipids
19
the membrane
69
Sphingolipids
20
Proteins at the bilayer surface
70
Sterols and linear isoprenoids
21
Extrinsic/peripheral membrane proteins
70
The lipid bilayer matrix
22
Amphitropic proteins
74
Structure of bilayer lipids
22
Lipid-anchored proteins
74
Diffusion of bilayer lipids
24
Reversible interactions of peripheral
Lipid asymmetry and membrane thickness
27
proteins with the lipid bilayer
77
Lipid polymorphism
28
Effects of peripheral protein binding on
Lamellar phase
28
membrane lipids
77
Hexagonal phase and the amphiphile
Interactions between peripheral proteins
shape hypothesis
29
and lipids
78
Cubic phase
30
Domains involved in binding
Miscibility of bilayer lipids
31
the membrane
81
Lateral domains and lipid rafts
34
Curvature
83
Detergent-resistant membranes
35
Modulation of binding
84
Diversity of lipids
37
Proteins and peptides that insert
Conclusion
39
into the membrane
85
For further reading
41
Toxins
Colicins
86
88
3 TOOLS FOR STUDYING MEMBRANE
Peptides
88
COMPONENTS: DETERGENTS AND
SecA: protein acrobatics
90
Proteins embedded in the membrane
91
MODEL SYSTEMS
42
Monotopic proteins
Integral membrane proteins
91
91
Detergents
43
Protein-lipid interactions
97
Types of detergents
43
Hydrophobic mismatch
101
Mechanism of detergent action
46
For further reading
103
Contents
5 BUNDLES AND BARRELS
105
Helical bundles
105
Bacteriorhodopsin
105
Photosynthetic reaction center
109
The proteins
110
Lipids
112
The cofactors
112
Antennae
113
The reaction cycle
114
/3-barrels
115
Porins
117
OmpF and OmpC
118
VDAC, a mitochondrial porin
122
Specific porins
123
PhoE, the phosphoporin
123
LamB, the maltoporin
124
Other /3-barrel transporters
124
Iron receptors
125
Outer membrane secretory proteins:
not /3-barrels
126
Conclusion
127
For further reading
127
6 FUNCTIONS AND FAMIUES
130
Membrane enzymes
130
Diacylglycerol kinase
132
Presenilin, an intra-membrane protease
134
P450 cytochromes
136
Transport proteins
137
Transport Classification System
138
Superfamilies of ATPases
139
ABC transporter superfamily
140
Group translocation
140
Symporters
142
Antiporters
142
Ion Channels
143
Membrane receptors
144
Nicotinic acetylcholine receptor
144
G protein-coupled receptors
145
Bioinformatics tools for membrane
protein families
146
Predicting TM segments
146
Hydrophobicity plots
148
Orientation of membrane proteins
149
The positive-inside rule
150
Inverted repeats
151
Genomic analysis of membrane proteins
153
Proteomics of membrane proteins
163
Predicting /3-barrels
164
For further reading
165
7 PROTEIN F0LDING AND BIOGENESIS 168
Protein folding
169
Folding a-helical membrane proteins
170
bR folding studies
173
Folding studies of /3-barrel membrane
proteins
175
Other folding studies
177
Whole protein hydrophobicity scale
178
Biogenesis of membrane proteins
178
Export from the cytoplasm
180
The translocon
187
The translocon structure
187
TM insertion
189
Biological hydrophobicity scale
191
Topogenesis in membrane proteins
195
Misfolding diseases
198
For further reading
201
8 DIFFRACTI0N AND SIMULATION
203
Back to the bilayer
203
Liquid crystallography
204
Liquid crystal theory
206
Joint refinement of x-ray and neutron
diffraction data
207
Modeling the bilayer
209
Simulations of lipid bilayers
209
Molecular dynamics
209
Monte Carlo
213
Lipids observed in x-ray structures
of membrane proteins
215
Crystallography of membrane proteins
219
A multidisciplinary approach
223
For further reading
225
9 MEMBRANE ENZYMES
226
Prostaglandin H2 synthase 227
OMPLA 230
Membrane proteases 234
Omptins 234
Intramembrane proteases 235
Rhomboid protease 236
Structure of the bacterial rhomboid GlpG 237
C7)
Contents
Formate dehydrogenase
239
P-type ATPases
243
Ca2+ ATPases
243
Na+, K+ ATPase
250
Other P-type ATPases
254
Conclusion
255
For further reading
255
10 MEMBRANE RECEPTORS
257
G protein-coupled receptors
258
Rhodopsin, a light-sensitive GPCR
259
Ground state rhodopsin
260
Activated rhodopsin
261
Rhodopsin as prototype
263
Adrenergic receptors
267
ß2AR structure
268
ßiAR structure
270
Activated /32AR in complex with Gs
270
Neurotransmitter receptors
274
Glutamate receptors: GluA2
274
Cys-loop receptors and GluCl
278
Conclusion
282
For further reading
282
11 TRANSPORTERS
284
Secondary transporters
284
MFS transporters
285
LacY, a scrutinized symporter
285
GlpT, an MFS antiporter
288
EmrD, an MFS exporter in an occluded
conformation
289
FucP, an MFS symporter in
co conformation
290
A paradigm for MFS transporters
291
Mitochondrial ADP/ATP carrier
291
AAC structure
291
Neurotransmitter transporters
294
Glutamate transporters and GltPh
294
Neurotransmitter sodium symporters
and LeuT
296
LeuT structure
298
Transport mechanism of LeuT
300
The NSS family and the LeuT (APC-fold)
superfamily
300
BetP and osmoregulated transport
303
The vitamin B12 uptake system 310
BtuCD-BtuF, an ABC transport system 311
BtuB, an outer membrane transporter
energized by TonB 313
Drug efflux Systems 316
Savl866 and P-glycoprotein,
ABC exporters 316
EmrE, an example of dual topology 318
Tripartite drug efflux via a membrane vacuum
ABC transporters and beyond
Maltose transporter
306
306
cleaner
320
AcrB, a peristaltic pump
321
Alternating site mechanism of AcrB
322
AcrA, a periplasmic adaptor protein
323
TolC, the channel-tunnel
323
Partners of TolC
325
Conclusion
325
For further reading
326
12 CHANNELS
328
Aquaporins and glyceroaquaporins
329
Structure of aquaporins
330
Glyceroaquaporins: GlpF
331
Human aquaporins: AQP4
333
Potassium Channels
335
KcsA structure and selectivity
336
Gating and activation
337
Voltage gating
339
Gating in human potassium Channels
341
Chloride Channels and the CLC family
343
CIC-ecl
344
CLC Channels as broken transporters
346
Mechanosensitive ion Channels
347
MscL
349
MscS
350
MS Channel gating
351
Gap junction Channels
354
Conclusion
356
For further reading
356
13 ELECTRON TRANSPORT AND
ENERGY TRANSDUCTI0N
358
Complexes of the respiratory chain
359
Complex I
359
Conformational coupling mechanism
363
Cytochrome bc i
365
The Q cycle
366
Fligh-resolution structures
366
Cytochrome c oxidase
High-resolution structures
Oxygen reduction
Proton pathways
F1F0-ATP synthase
Subunit structure and function
Fi Domain
F0 Domain
Regulation of the F|F0-ATPase
Catalytic mechanism of a rotary motor
Rotational catalysis
Conclusions
For further reading
Contents
14 IN PURSUIT OF COMPLEXITY 385
Complex formation 386
Conformational changes and
dynamics 390
For further reading 392
Appendix I: Abbreviations 393
Appendix II: Single-Letter Codes for Amino Acids 397
Index 399
371
371
373
374
375
377
377
379
379
380
380
383
383
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| id | DE-604.BV041553120 |
| illustrated | Illustrated |
| indexdate | 2024-07-10T00:58:24Z |
| institution | BVB |
| isbn | 9781107030633 9780521856553 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-026998809 |
| oclc_num | 869870549 |
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| physical | XIV, 411 S. zahlr. Ill., graph. Darst. |
| publishDate | 2014 |
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| publisher | Cambridge Univ. Press |
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| spelling | Luckey, Mary 1948- Verfasser (DE-588)1052352936 aut Membrane structural biology with biochemical and biophysical foundations Mary Luckey 2. ed. Cambridge [u.a.] Cambridge Univ. Press 2014 XIV, 411 S. zahlr. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Cell Membrane physiology Membrane Lipids physiology Membrane Proteins physiology Membrane lipids Membrane proteins Membranes (Biology) Membranproteine (DE-588)4130026-9 gnd rswk-swf Biomembran (DE-588)4006884-5 gnd rswk-swf Biochemie (DE-588)4006777-4 gnd rswk-swf Physiologie (DE-588)4045981-0 gnd rswk-swf Membranproteine (DE-588)4130026-9 s DE-604 Biomembran (DE-588)4006884-5 s Biochemie (DE-588)4006777-4 s Physiologie (DE-588)4045981-0 s b DE-604 HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=026998809&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Luckey, Mary 1948- Membrane structural biology with biochemical and biophysical foundations Cell Membrane physiology Membrane Lipids physiology Membrane Proteins physiology Membrane lipids Membrane proteins Membranes (Biology) Membranproteine (DE-588)4130026-9 gnd Biomembran (DE-588)4006884-5 gnd Biochemie (DE-588)4006777-4 gnd Physiologie (DE-588)4045981-0 gnd |
| subject_GND | (DE-588)4130026-9 (DE-588)4006884-5 (DE-588)4006777-4 (DE-588)4045981-0 |
| title | Membrane structural biology with biochemical and biophysical foundations |
| title_auth | Membrane structural biology with biochemical and biophysical foundations |
| title_exact_search | Membrane structural biology with biochemical and biophysical foundations |
| title_full | Membrane structural biology with biochemical and biophysical foundations Mary Luckey |
| title_fullStr | Membrane structural biology with biochemical and biophysical foundations Mary Luckey |
| title_full_unstemmed | Membrane structural biology with biochemical and biophysical foundations Mary Luckey |
| title_short | Membrane structural biology |
| title_sort | membrane structural biology with biochemical and biophysical foundations |
| title_sub | with biochemical and biophysical foundations |
| topic | Cell Membrane physiology Membrane Lipids physiology Membrane Proteins physiology Membrane lipids Membrane proteins Membranes (Biology) Membranproteine (DE-588)4130026-9 gnd Biomembran (DE-588)4006884-5 gnd Biochemie (DE-588)4006777-4 gnd Physiologie (DE-588)4045981-0 gnd |
| topic_facet | Cell Membrane physiology Membrane Lipids physiology Membrane Proteins physiology Membrane lipids Membrane proteins Membranes (Biology) Membranproteine Biomembran Biochemie Physiologie |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=026998809&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| work_keys_str_mv | AT luckeymary membranestructuralbiologywithbiochemicalandbiophysicalfoundations |