Tiling arrays: methods and protocols
Saved in:
| Main Author: | |
|---|---|
| Format: | Book |
| Language: | English |
| Published: |
New York [u.a.]
Humana Press
2013
|
| Series: | Methods in molecular biology
1067 |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Item Description: | Includes bibliographical references and index |
| Physical Description: | XI, 236 S. Ill., graph. Darst. 26 cm |
Staff View
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Record in the Search Index
| _version_ | 1804151661769261056 |
|---|---|
| adam_text | Tiling Arrays o
Methods and Protocols
Edited by
Tin-Lap Lee
Reproduction, Endocrinology and Development Program,
School of Biomedical Sciences, The Chinese University of Hong Kong, Shatin,
Hong Kong SAR, China
Alfred Chun Shui Luk
Reproduction, Endocrinology and Development Program,
School of Biomedical Sciences, The Chinese University of Hong Kong, Shatin,
Hong Kong SAR, China
Humana Press
o
Contents
Preface v
Contributors ix
PART I OVERVIEW
1 A Brief Introduction to Tiling Microarrays: Principles, Concepts,
and Applications 3
Christophe Lemetre and Zhengdong D Zhang
PART II TRANSCRIPTIONAL REGULATION AND EXPRESSION
2 Design of Tiling Arrays and Their Application
to Bacterial Transcriptome Analysis 23
Takeshi Akama, Kazuaki Nakamura, Akito Tanoue, and Koichi Suzuki
3 Transcript Profiling in Arabidopsis with Genome Tiling Microarrays 35
Diana Coman, Wilhelm Gruissem, and Lars Hennig
4 Genome-Wide Analysis of Transcription Factor-Binding Sites
in Skeletal Muscle Cells Using ChlP-Seq 51
Chung-II An and Nobuko Hagiwara
5 Analysis of Allele-Specific Gene Expression Using a Target-Oriented
Tiling Microarray Assay 65
Huiyong Zhang, Xing-Wang Deng, and Lei Li
PART III GENETICS AND EPIGENETICS REGULATION
6 Detection of Epigenetic Alterations Using Tiling Arrays 79
Hoi-Hung Cheung, Owen M Rennert, and Tin-Lap Lee
7 Investigating Gene Promoter Methylation in a Mouse Model
of Status Epilepticus 87
Suzanne F C Miller-Delaney, Sudipto Das, Raymond L Stallings,
and David C Henshall
PART IV DATA ANALYSIS
8 Integrative Analysis of ChlP-Chip and ChIP Seq Dataset 105
Lihua Julie Zhu
9 HAT: A Novel Statistical Approach to Discover Functional Regions
in the Genome 125
Erdogan Taskesen, Bas Wouters, and Ruud Delwel
vii
viii Contents
10 Inference of Alternative Splicing from Tiling Array Data 143
Johannes Eichner
11 Analysis of In Vivo Occupancy of Aebpl, a Transcription Factor, O
Using High Resolution Tiling Array 165
Swati Sinha, Sainitin Donakonda, and Satyanarayana MR Rao
12 Application of the Simple and Efficient Mpeak Modeling
in Binding Peak Identification in ChlP-Chip Studies 185
Ming Zheng, Yunmin Li, and Yun-Fai Chris Lau
A
13 Evaluation of MeDIP-Chip in the Context of Whole-Genome Bisulfite
Sequencing (WGBS-Seq) in Arabidopsis 203
Rene Wardenaar, Haiyin Liu, Vincent Colot, Maria Colome-Tatche,
and Frank Johannes
14 Mapping Genomic Features of Tiling Microarray Data by TileMapper 225
Hoi-Hung Cheung, Janek Claus, Sumeeta Singh, Chandan Sastry,
Owen M Rennert, Wai-Yee Chan, and Tin-Lap Lee
Index 235
v
a
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| indexdate | 2024-07-10T00:58:22Z |
| institution | BVB |
| language | English |
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| physical | XI, 236 S. Ill., graph. Darst. 26 cm |
| publishDate | 2013 |
| publishDateSearch | 2013 |
| publishDateSort | 2013 |
| publisher | Humana Press |
| record_format | marc |
| series | Methods in molecular biology |
| series2 | Methods in molecular biology Springer protocols |
| spelling | Lee, Tin-Lap Verfasser (DE-588)104687599X aut Tiling arrays methods and protocols ed. by Tin-la Lee ... New York [u.a.] Humana Press 2013 XI, 236 S. Ill., graph. Darst. 26 cm txt rdacontent n rdamedia nc rdacarrier Methods in molecular biology 1067 Springer protocols Includes bibliographical references and index DNA microarrays Gene Expression Profiling / Laboratory Manuals / methods Microarray Analysis / Laboratory Manuals Methods in molecular biology 1067 (DE-604)BV035362695 1067 HEBIS Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=026997807&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Lee, Tin-Lap Tiling arrays methods and protocols Methods in molecular biology DNA microarrays Gene Expression Profiling / Laboratory Manuals / methods Microarray Analysis / Laboratory Manuals |
| title | Tiling arrays methods and protocols |
| title_auth | Tiling arrays methods and protocols |
| title_exact_search | Tiling arrays methods and protocols |
| title_full | Tiling arrays methods and protocols ed. by Tin-la Lee ... |
| title_fullStr | Tiling arrays methods and protocols ed. by Tin-la Lee ... |
| title_full_unstemmed | Tiling arrays methods and protocols ed. by Tin-la Lee ... |
| title_short | Tiling arrays |
| title_sort | tiling arrays methods and protocols |
| title_sub | methods and protocols |
| topic | DNA microarrays Gene Expression Profiling / Laboratory Manuals / methods Microarray Analysis / Laboratory Manuals |
| topic_facet | DNA microarrays Gene Expression Profiling / Laboratory Manuals / methods Microarray Analysis / Laboratory Manuals |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=026997807&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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