Parallel computing for bioinformatics and computational biology models, enabling technologies, and case studies (Wiley-Interscience, 2006)
Includes bibliographical references and index
Parallel and evolutionary approaches to computational biology - Nouhad Rizk -- - Parallel Monte Carlo simulation of HIV molecular evolution in response to immune surveillance - Jack da Silva -- - Differential evolutionary algorithms for in vivo dynamic analysis of glycolysis and pentose phosphate pathway in Escherichia coli - Andrei Doncescu -- - Compute-intensive simulations for cellular models - Kevin Burrage -- - Parallel computation in simulating diffusion and deformation in human brain - Jun Zhang -- - Computational molecular biology - Azzedine Boukerche -- - Special-purpose computing for biological sequence analysis - Bertil Schmidt -- - Multiple sequence alignment in parallel on a cluster of workstations - Amitava Datta -- - Searching sequence databases using high performance BLASTs - Xue Wu -- - Parallel implementations of local sequence alignment: hardware and software - Vipin Chaudhary --
- Parallel computing in the analysis of gene expression relationships - Robert Martino -- - Parallel algorithms for solving the fragment assembly problem in DNA strands - Enrique Alba -- - A cooperative genetic algorithm for knowledge discovery in microarray experiments - Mohammad Khabzaoui -- - Parallel and distributed computation of large phylogenetic trees - Alexandros P. Stamatakis -- - Phylogenetic parameter estimation on COWs - Ekkehard Petzold -- - High-performance phylogeny reconstruction under maximum parsimony - Tiffani Williams -- - Protein folding with the parallel replica exchange molecular dynamics method - Ruhong Zhou -- - High performance alignment methods for protein threading - R. Andonov -- - Parallel evolutionary computations in discerning protein structures - Richard O. Day -- - A brief Overview of Grid activities for bioinformatics and health applications - Ali Al Mazari -- - Parallel algorithms for bioinformatics - Shahid H. Bokhari --
- Cluster and grid infrastructure for computational chemistry and biochemistry - Kim K. Baldridge -- - Distributed workflows in bioinformatics - Arun Krishnan -- - Molecular structure determination on a computational and data grid - Russ Miller -- - GIPSY : a problem solving environment for bioinformatics applications - Rajendra R. Joshi -- - TaskSpaces : a software framework for parallel bioinformatics on computational grids - Hans De Sterck -- - The organic grid : self-organizing computation on desktop grids - Arjav J. Chakrvarti -- - FPGA Computing in modern bioinformatics - H. Simmler -- - Virtual microscopy : distributed image storage, retrieval, analysis, and visualization - T. Pan
Parallel Computing for Bioinformatics is the first book to deal with the topic of parallel computing and bioinformatics. Written by renowned experts and well-reputed researchers in this emerging field, it provides an opportunity for researchers to explore the rich and complex subject of ?Bioinformatics?