Algorithms in bioinformatics: 12th international workshop, WABI 2012, Ljubljana, Slovenia, September 10 - 12, 2012 ; proceedings
Saved in:
| Format: | Conference Proceeding Book |
|---|---|
| Language: | English |
| Published: |
Berlin [u.a.]
Springer
2012
|
| Series: | Lecture notes in computer science
7534 |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Physical Description: | XIII, 454 S. Ill., graph. Darst. |
| ISBN: | 3642331211 9783642331213 |
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IMAGE 1
TABLE OF C O N T E N T S
PRESERVING INVERSION PHYLOGENY RECONSTRUCTION 1
MATTHIAS BERNT, KUN-MAO CHAO, JYUN-WEI KAO, MARTIN MIDDENDORF, AND ERIC
TANNIER
FAST PHYLOGENETIC TREE RECONSTRUCTION USING LOCALITY-SENSITIVE HASHING
14
DANIEL G. BROWN AND JAKUB TRUSZKOWSKI
EFFICIENT COMPUTATION OF POPULAR PHYLOGENETIC TREE MEASURES 30
CONSTANTINOS TSIROGIANNIS, BRODY SANDEL, AND DIMITRIS CHELIOTIS
SIBJOIN: A FAST HEURISTIC FOR HALF-SIBLING RECONSTRUCTION 44
DANIEL G. BROWN AND DANIEL DEXTER
RECONSTRUCTING THE EVOLUTION OF MOLECULAR INTERACTION NETWORKS UNDER THE
DMC AND LINK DYNAMICS MODELS 57
YUN ZHU AND LUAY NAKHLEH
ESTIMATING POPULATION SIZE VIA LINE GRAPH RECONSTRUCTION 69
BJARNI V. HALLDORSSON, DIMA BLOKH, AND RODED SHARAN
EXTRACTING CONFLICT-FREE INFORMATION FROM MULTI-LABELED TREES 81
AKSHAY DEEPAK, DAVID FERNANDEZ-BACA, AND MICHELLE M. MCMAHON
REDUCING PROBLEMS IN UNROOTED TREE COMPATIBILITY TO RESTRICTED
TRIANGULATIONS OF INTERSECTION GRAPHS 93
ROB GYSEL, KRISTIAN STEVENS, AND DAN GUSFIELD
AN OPTIMAL RECONCILIATION ALGORITHM FOR GENE TREES WITH POLYTOMIES 106
MANUEL LAFOND, KRISTER M. SWENSON, AND NADIA EL-MABROUK
ACCOUNTING FOR GENE TREE UNCERTAINTIES IMPROVES GENE TREES AND
RECONCILIATION INFERENCE 123
THI HAU NGUYEN, JEAN-PHILIPPE DOYON, STEPHANIE POINTET, ANNE-MURIEL
ARIGON CHIFOLLEAU, VINCENT RANWEZ, AND VINCENT BERRY
RNA TREE COMPARISONS VIA UNROOTED UNORDERED ALIGNMENTS 135
NIMROD MILO, SHAY ZAKOV, EREZ KATZENELSON, EITAN BACHMAT, YEFIM DINITZ,
AND MICHAL ZIV-UKELSON
HTTP://D-NB.INFO/1024863859
IMAGE 2
XII TABLE OF CONTENTS
TREE DECOMPOSITION AND PARAMETERIZED ALGORITHMS FOR RNA
STRUCTURE-SEQUENCE ALIGNMENT INCLUDING TERTIARY INTERACTIONS AND
PSEUDOKNOTS (EXTENDED ABSTRACT) 149
PHILIPPE RINAUDO, YANN PONTY, DOMINIQUE BARTH, AND ALAIN DENISE
(5-TRIMAX: EXTRACTING TRICLUSTERS AND ANALYSING COREGULATION IN TIME
SERIES GENE EXPRESSION D A T A 165
ANIRBAN BHAR, MARTIN HAUBROCK, ANIRBAN MUKHOPADHYAY, UJJWAL MAULIK,
SANGHAMITRA BANDYOPADHYAY, AND EDGAR WINGENDER
CLIIQ: ACCURATE COMPARATIVE DETECTION AND QUANTIFICATION OF EXPRESSED
ISOFORMS IN A POPULATION 178
YEN- YI LIN, PHUONG DAO, FARAZ HACH, MARZIEH BAKHSHI, FAN MO, A N N A
LAPUK, COLIN COLLINS, AND S. CENK SAHINALP
IMPROVED LOWER BOUNDS ON THE COMPATIBILITY OF QUARTETS, TRIPLETS, AND
MULTI-STATE CHARACTERS 190
BRAD SHUTTERS, SUDHEER VAKATI, AND DAVID FERNANDEZ-BACA
SUCCINCT MULTIBIT TREE: COMPACT REPRESENTATION OF MULTIBIT TREES BY
USING SUCCINCT D A T A STRUCTURES IN CHEMICAL FINGERPRINT SEARCHES 201
YASUO TABEI
COMPARING DNA SEQUENCE COLLECTIONS BY DIRECT COMPARISON OF COMPRESSED
TEXT INDEXES 214
ANTHONY J. COX, TOBIAS JAKOBI, GIOVANNA ROSONE, AND OLE B.
SCHULZ-TRIEGLAFF
SUCCINCT DE BRUIJN GRAPHS 225
ALEXANDER BOWE, TAKU ONODERA, KUNIHIKO SADAKANE, AND TETSUO SHIBUYA
SPACE-EFFICIENT AND EXACT DE BRUIJN GRAPH REPRESENTATION BASED ON A
BLOOM FILTER 236
RAYAN CHIKHI AND GUILLAUME RIZK
FROM DE BRUIJN GRAPHS T O RECTANGLE GRAPHS FOR GENOME ASSEMBLY . . . .
249 NIKOLAY VYAHHI, ALEX PYSHKIN, SON PHAM, AND PAVEL A. PEVZNER
MORPH-PRO: A NOVEL ALGORITHM AND WEB SERVER FOR PROTEIN MORPHING 262
NATALIE E. CASTELLANA, ANDREY LUSHNIKOV, PIOTR ROTKIEWICZ, NATASHA
SEFCOVIC, PAVEL A. PEVZNER, ADAM GODZIK, AND KIRA VYATKINA
HOW ACCURATELY CAN WE MODEL PROTEIN STRUCTURES WITH DIHEDRAL ANGLES? 274
XUEFENG CUI, SHUAI CHENG LI, DONGBO B U , BABAK ALIPANAHI RAMANDI, AND
MING L I
IMAGE 3
TABLE OF CONTENTS XIII
RESOLVING SPATIAL INCONSISTENCIES IN CHROMOSOME CONFORMATION D A T A . .
. 288 GEET DUGGAL, ROB PATRO, EMRE SEFER, HAO WANG, DARYA FILIPPOVA,
SAMIR KHULLER, AND CARL KINGSFORD
MS-DPR: AN ALGORITHM FOR COMPUTING STATISTICAL SIGNIFICANCE OF SPECTRAL
IDENTIFICATIONS OF NON-LINEAR PEPTIDES 301
HOSEIN MOHIMANI, SANGTAE KIM, AND PAVEL A. PEVZNER
FINIS: IMPROVED IN SILICO FINISHING USING AN EXACT QUADRATIC PROGRAMMING
FORMULATION 314
SONG GAO, DENIS BERTRAND, AND NIRANJAN NAGARAJAN
LIGHTWEIGHT LCP CONSTRUCTION FOR NEXT-GENERATION SEQUENCING DATASETS 326
MARKUS J. BAUER, ANTHONY J. COX, GIOVANNA ROSONE, AND MARINELLA
SCIORTINO
SIGN ASSIGNMENT PROBLEMS ON PROTEIN NETWORKS 338
SHAY HOURI AND RODED SHARAN
SPARSE LEARNING BASED LINEAR COHERENT BI-CLUSTERING 346
YI SHI, XIAOPING LIAO, XINHUA ZHANG, GUOHUI LIN, AND DALE SCHUURMANS
A SIMPLIFIED VIEW OF DCJ-INDEL DISTANCE 365
PHILLIP E.C. COMPEAU
DCJ-INDEL DISTANCE WITH DISTINCT OPERATION COSTS 378
POLY H. DA SILVA, MARILIA D. V. BRAGA, RAPHAEL MACHADO, AND SIMONE
DANTAS
HIDDEN BREAKPOINTS IN GENOME ALIGNMENTS 391
BIRTE KEHR, K N U T REINERT, AND AARON E. DARLING
A PROBABILISTIC APPROACH T O ACCURATE ABUNDANCE-BASED BINNING OF
METAGENOMIC READS 404
OLGA TANASEICHUK, JAMES BORNEMAN, AND TAO JIANG
TANDEM HALVING PROBLEMS BY DC J 417
ANTOINE THOMAS, AIDA OUANGRAOUA, AND JEAN-STEPHANE VARRE
A PRACTICAL APPROXIMATION ALGORITHM FOR SOLVING MASSIVE INSTANCES OF
HYBRIDIZATION NUMBER 430
LEO VAN IERSEL, STEVEN KELK, NELA LEKIC, AND CELINE SCORNAVACCA
DISTRIBUTED STRING MINING FOR HIGH-THROUGHPUT SEQUENCING D A T A 441
NIKO VALIMAKI AND SIMON J. PUGLISI
A U T H O R I N D E X 453 |
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| format | Conference Proceeding Book |
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| spelling | Algorithms in bioinformatics 12th international workshop, WABI 2012, Ljubljana, Slovenia, September 10 - 12, 2012 ; proceedings Ben Raphael ... (eds.) Berlin [u.a.] Springer 2012 XIII, 454 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Lecture notes in computer science 7534 : Lecture notes in bioinformatics Algorithmus (DE-588)4001183-5 gnd rswk-swf Bioinformatik (DE-588)4611085-9 gnd rswk-swf (DE-588)1071861417 Konferenzschrift 2012 Ljubljana gnd-content Bioinformatik (DE-588)4611085-9 s Algorithmus (DE-588)4001183-5 s DE-604 Raphael, Ben Sonstige oth WABI 12 2012 Ljubljana Sonstige (DE-588)1026459524 oth Erscheint auch als Online-Ausgabe 978-3-642-33122-0 Lecture notes in computer science 7534 (DE-604)BV000000607 7534 DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=025285236&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Algorithms in bioinformatics 12th international workshop, WABI 2012, Ljubljana, Slovenia, September 10 - 12, 2012 ; proceedings Lecture notes in computer science Algorithmus (DE-588)4001183-5 gnd Bioinformatik (DE-588)4611085-9 gnd |
| subject_GND | (DE-588)4001183-5 (DE-588)4611085-9 (DE-588)1071861417 |
| title | Algorithms in bioinformatics 12th international workshop, WABI 2012, Ljubljana, Slovenia, September 10 - 12, 2012 ; proceedings |
| title_auth | Algorithms in bioinformatics 12th international workshop, WABI 2012, Ljubljana, Slovenia, September 10 - 12, 2012 ; proceedings |
| title_exact_search | Algorithms in bioinformatics 12th international workshop, WABI 2012, Ljubljana, Slovenia, September 10 - 12, 2012 ; proceedings |
| title_full | Algorithms in bioinformatics 12th international workshop, WABI 2012, Ljubljana, Slovenia, September 10 - 12, 2012 ; proceedings Ben Raphael ... (eds.) |
| title_fullStr | Algorithms in bioinformatics 12th international workshop, WABI 2012, Ljubljana, Slovenia, September 10 - 12, 2012 ; proceedings Ben Raphael ... (eds.) |
| title_full_unstemmed | Algorithms in bioinformatics 12th international workshop, WABI 2012, Ljubljana, Slovenia, September 10 - 12, 2012 ; proceedings Ben Raphael ... (eds.) |
| title_short | Algorithms in bioinformatics |
| title_sort | algorithms in bioinformatics 12th international workshop wabi 2012 ljubljana slovenia september 10 12 2012 proceedings |
| title_sub | 12th international workshop, WABI 2012, Ljubljana, Slovenia, September 10 - 12, 2012 ; proceedings |
| topic | Algorithmus (DE-588)4001183-5 gnd Bioinformatik (DE-588)4611085-9 gnd |
| topic_facet | Algorithmus Bioinformatik Konferenzschrift 2012 Ljubljana |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=025285236&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV000000607 |
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