The function of the Arabidopsis receptor-like kinase SRF4 in growth regulation:
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| Main Author: | |
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| Format: | Thesis Book |
| Language: | English |
| Published: |
2012
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| Subjects: | |
| Online Access: | Volltext https://nbn-resolving.org/urn:nbn:de:bvb:91-diss-20120321-1094858-1-0 Inhaltsverzeichnis |
| Item Description: | Zsfassung in dt. Sprache |
| Physical Description: | XI, 158 S. Ill., graph. Darst. |
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Record in the Search Index
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| adam_text | IMAGE 1
CONTENTS
CONTENTS I
LIST O F SYMBOLS AND ABBREVIATIONS V I
S U M M A R Y VIII
ZUSAMMENFASSUNG X
1 INTRODUCTION 1
1.1 PLANT RECEPTOR-LIKE KINASES 1
1.1.1 EVOLUTION OF RECEPTOR-LIKE KINASES 2
1.1.2 LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASES 6
1.1.3 ATYPICAL RECEPTOR-LIKE KINASES 6
1.1.4 THE MECHANISM OF SIGNAL TRANSDUCTION OF TYPICAL AND ATYP
ICAL RECEPTOR-LIKE KINASES 7
1.1.5 THE STRUBBELIG RECEPTOR FAMILY 12
1.2 PHOTORESPIRATION IN GENERAL AND HYDROXY-PYRUVATE-REDUCTASES IN
PARTICULAR 16
1.2.1 PHOTORESPIRATION AND ITS PURPOSE 17
1.2.1.1 HYDROXYPYRUVATE-REDUCTASES: MANY PLAYERS FOR
ONE AIM 20
1.3 WD40 AND RICL DOMAIN CONTAINING PROTEINS 21
1.3.1 WD40 DOMAINS PROVIDE SCAFFOLDS FOR DIFFERENT KIND OF IN
TERACTIONS 21
1.3.2 R I C L IN YEAST 24
1.4 ORGAN SIZE CONTROL IN ARABIDOPSIS THALIANA 25
1.4.1 TRANSCRIPTION FACTORS CAUSING ORGANS TO GROW 25
1.4.2 A RECEPTOR-LIKE KINASE IN ORGAN SIZE CONTROL 26
I
HTTP://D-NB.INFO/1025591135
IMAGE 2
CONTENTS
1.4.3 OF PLANTS AND ANIMALS 27
1.4.4 THE COMPENSATORY EFFECT 27
1.4.5 CELL WALL COMPOSITION AFFECTS CELL GROWTH 28
1.4.5.1 XYLOGLUCAN AND CELL GROWTH 29
R E S U L T S 3 1
2.1 SRF4 IN ORGAN SIZE CONTROL 31
2.1.1 PHENOTYPIC ANALYSIS OF SRF4 33
2.1.2 SRF4: A N ATYPICAL KINASE? 38
2.1.2.1 IN VITRO KINASE ASSAY OF SRF4 38
2.1.2.2 THE KINASE DEAD VERSION OF SRF4 YIELDS NO TRANSFORMANTS 39
2.1.3 SRF4 IS LOCATED IN THE PLASMA MEMBRANE AND IN THE NUCLEUS 40
2.1.4 SRF4::GUS STAINING PATTERN 42
2.1.5 1001 GENOMES SEQUENCE ANALYSIS 44
2.1.6 EVOLUTION OF SRF4 AND SRF5 IN VIRIDIPLANTAE 46
2.2 THE HYDROXYPYRUVATE-REDUCTASE DLG: A POTENTIAL DOWNSTREAM
PARTNER OF SRF4 47
2.2.1 DLG PHENOCOPIES SRF4 48
2.2.2 INTERACTION STUDIES BETWEEN DLG AND SRF4 50
2.2.2.1 DLG AND SRF4I INTERACT IN VITRO 50
2.2.2.2 DLG AND SRF4 IN YEAST 50
2.2.2.3 GENETIC INTERACTION STUDIES BETWEEN SRF4 AND
DLG 52
2.2.3 DLG IS A CYTOSOLIC PROTEIN 54
2.2.4 DLG SHOWS STRONG GUS EXPRESSION PATTERN IN DIFFERENT
TISSUES 55
2.2.5 DLG IN 1001 GENOMES 56
2.2.6 EVOLUTION OF DLG IN VIRIDIPLANTAE 57
2.3 WINZLING : ANOTHER POTENTIAL DOWNSTREAM SIGNALING PARTNER OF
SRF4 58
2.3.1 THE PHENOTYPE OF WIZ GAIN- AND LOSS-OF-FUNCTION MUTANTS 59
2.3.2 WINZLING L I K E (WIZL) IS A PARALOGUE OF WIZ 63
2.3.3 WIZ INTERACTS WITH SRF4 IN YEAST 66
2.3.4 GENETIC INTERACTION STUDIES BETWEEN SRF4, D L G AND W I Z 67
IMAGE 3
CONTENTS III
2.3.4.1 SRF4-8 WIZ-1 DOUBLE MUTANT RESCUES WIZ-1 P H E N O
TYPE 67
2.3.4.2 SRF4-8 IS EPISTATIC TO WIZ-2 67
2.3.4.3 DLG-6 WIZ-1 DOUBLE MUTANT 68
2.3.4.4 DLG-6 WIZ-2 DOUBLE MUTANT RESCUES WIZ-2 PHENOTYPE 69
2.3.4.5 SRF4 OVER-EXPRESSION IN WIZ-1 BACKGROUND SHOWS
ADDITIVE PHENOTYPE 69
2.3.5 WIZR.GUS EXPRESSION PATTERN 70
2.4 CELL WALL ANALYSIS 72
3 DISCUSSION AND OUTLOOK 7 5
3.1 IS SRF4 AN ACTIVE KINASE? 75
3.2 DOES SRF4 INTERACT WITH DLG AND WIZ? 77
3.3 REGULATION OF DLG AND SRF4 79
3.3.1 POTENTIAL CONTROL MECHANISMS OF DLG 79
3.3.2 SRF4 IS REGULATED POST-TRANSCRIPTIONALLY 79
3.4 POSSIBLE FUNCTIONS OF SRF4, DLG AND WIZ 81
3.4.1 PUTATIVE FUNCTIONS OF WIZ IN GROWTH AND AGE CONTROL . . . 81
3.4.2 SRF4 AND DLG IN PHOTORESPIRATION 83
4 MATERIALS AND M E T H O D S 8 5
4.1 MATERIALS 85
4.1.1 CHEMICALS, ENZYMES, HARD- AND SOFTWARE 86
4.1.1.1 CHEMICALS AND SOLUTIONS 86
4.1.1.2 ENZYMES 86
4.1.1.3 PRIMERS 86
4.1.1.4 ANTIBODIES 86
4.1.1.5 TRANSFER MEMBRANE 89
4.1.1.6 KITS 89
4.1.1.7 DEVICES 89
4.1.1.8 GROWTH MEDIA 89
4.1.2 MICROORGANISMS AND THE CORRESPONDING VECTORS 91
4.1.3 PLANT LINES AND THE CORRESPONDING VECTORS 92
4.1.4 SOFTWARE AND DATABASES 92
4.2 METHODS 93
4.2.1 PLANT WORK 93
4.2.1.1 PLANT GROWTH CONDITIONS 93
IMAGE 4
IV
CONTENTS
4.2.1.2 PLANT TRANSFORMATION 94
4.2.1.3 SEED STERILIZATION 98
4.2.1.4 PLANT SELECTION 98
4.2.1.5 CROSSINGS 99
4.2.1.6 PHENOTYPIC ANALYSIS 99
4.2.1.7 HYPOCOTYL MEASUREMENTS 100
4.2.1.8 CHLOROPHYLL CONTENT 100
4.2.1.9 PHOTOSYNTHETIC YIELD MEASUREMENTS 100
4.2.1.10 CARBOHYDRATE ANALYSIS 101
4.2.1.11 GUS STAINING 101
4.2.1.12 PROTOPLAST TRANSFORMATION 102
4.2.2 YEAST TWO-HYBRID 103
4.2.2.1 YEAST PLASMID ISOLATION 103
4.2.2.2 SMALL SCALE YEAST TRANSFORMATION 104
4.2.2.3 SCREENING FOR INTERACTION 105
4.2.3 ESCHERICHIA COLI AND AGROBACTERIUM TUMEFACIENS 106
4.2.3.1 PREPARATION OF ELECTRO COMPETENT ESCHERICHIA COLI
AND AGROBACTERIUM TUMEFACIENS CELLS 106
4.2.3.2 TRANSFORMATION OF ELECTRO COMPETENT ESCHERICHIA
COLI AND AGROBACTERIUM TUMEFACIENS 107
4.2.4 DNA WORK 107
4.2.4.1 ARABIDOPSIS GENOMIC DNA ISOLATION 107
4.2.4.2 GENOTYPING 108
4.2.4.3 DNA ISOLATION FROM AGAROSE GEL 109
4.2.4.4 CLONING 109
4.2.4.5 SEQUENCING I L L
4.2.5 RNA WORK I L L
4.2.5.1 ARABIDOPSIS RNA ISOLATION 112
4.2.5.2 CDNA SYNTHESIS 112
4.2.5.3 RT-PCR 112
4.2.6 PROTEIN WORK 112
4.2.6.1 E. COLI AS EXPRESSION SYSTEM 112
4.2.6.2 OPTIMIZED CONDITIONS FOR INDUCTION OF SRF4; AND
DLG 113
4.2.6.3 PURIFICATION OF SRF4J AND DLG 113
4.2.6.4 SDS-PAGE 114
IMAGE 5
CONTENTS V
4.2.6.5 WESTERN BLOT 115
4.2.6.6 KINASE ASSAY 116
4.2.6.7 I N VITRO GST-PULLDOWN ASSAY 117
4.2.7 EVOLUTIONARY ANALYSIS 118
4.2.8 MICROSCOPY AND ART WORK 118
4.2.8.1 CELL SIZE ANALYSIS 118
4.2.8.2 ALEXANDER STAIN 119
4.2.8.3 SCREENING AND IMAGING OF TRANSGENIC E G F P LINES 119
4.2.8.4 PLASMOLYSIS 120
4.2.8.5 FM4-64 STAINING 120
5 A P P E N D I X 121
BIBLIOGRAPHY 125
LIST O F FIGURES 1 5 4
LIST O F TABLES 156
DANKSAGUNG 1 5 7
|
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| spelling | Skornia, Christine Verfasser aut The function of the Arabidopsis receptor-like kinase SRF4 in growth regulation Christine Skornia 2012 XI, 158 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Zsfassung in dt. Sprache München, Techn. Univ., Diss., 2012 Ackerschmalwand (DE-588)4141299-0 gnd rswk-swf Reductasen (DE-588)4348499-2 gnd rswk-swf Kinasen (DE-588)4268693-3 gnd rswk-swf Enzymatische Regulation (DE-588)4136839-3 gnd rswk-swf Wechselwirkung (DE-588)4064937-4 gnd rswk-swf Wachstumsregulation (DE-588)4188805-4 gnd rswk-swf (DE-588)4113937-9 Hochschulschrift gnd-content Ackerschmalwand (DE-588)4141299-0 s Wachstumsregulation (DE-588)4188805-4 s Kinasen (DE-588)4268693-3 s Reductasen (DE-588)4348499-2 s Enzymatische Regulation (DE-588)4136839-3 s Wechselwirkung (DE-588)4064937-4 s b DE-604 Erscheint auch als Online-Ausgabe urn:nbn:de:bvb:91-diss-20120321-1094858-1-0 http://mediatum.ub.tum.de/node?id=1094858 Verlag kostenfrei Volltext https://nbn-resolving.org/urn:nbn:de:bvb:91-diss-20120321-1094858-1-0 Resolving-System DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=025012970&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Skornia, Christine The function of the Arabidopsis receptor-like kinase SRF4 in growth regulation Ackerschmalwand (DE-588)4141299-0 gnd Reductasen (DE-588)4348499-2 gnd Kinasen (DE-588)4268693-3 gnd Enzymatische Regulation (DE-588)4136839-3 gnd Wechselwirkung (DE-588)4064937-4 gnd Wachstumsregulation (DE-588)4188805-4 gnd |
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| title | The function of the Arabidopsis receptor-like kinase SRF4 in growth regulation |
| title_auth | The function of the Arabidopsis receptor-like kinase SRF4 in growth regulation |
| title_exact_search | The function of the Arabidopsis receptor-like kinase SRF4 in growth regulation |
| title_full | The function of the Arabidopsis receptor-like kinase SRF4 in growth regulation Christine Skornia |
| title_fullStr | The function of the Arabidopsis receptor-like kinase SRF4 in growth regulation Christine Skornia |
| title_full_unstemmed | The function of the Arabidopsis receptor-like kinase SRF4 in growth regulation Christine Skornia |
| title_short | The function of the Arabidopsis receptor-like kinase SRF4 in growth regulation |
| title_sort | the function of the arabidopsis receptor like kinase srf4 in growth regulation |
| topic | Ackerschmalwand (DE-588)4141299-0 gnd Reductasen (DE-588)4348499-2 gnd Kinasen (DE-588)4268693-3 gnd Enzymatische Regulation (DE-588)4136839-3 gnd Wechselwirkung (DE-588)4064937-4 gnd Wachstumsregulation (DE-588)4188805-4 gnd |
| topic_facet | Ackerschmalwand Reductasen Kinasen Enzymatische Regulation Wechselwirkung Wachstumsregulation Hochschulschrift |
| url | http://mediatum.ub.tum.de/node?id=1094858 https://nbn-resolving.org/urn:nbn:de:bvb:91-diss-20120321-1094858-1-0 http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=025012970&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| work_keys_str_mv | AT skorniachristine thefunctionofthearabidopsisreceptorlikekinasesrf4ingrowthregulation |