Holdings: Research in computational molecular biology

Research in computational molecular biology: 16th annual international conference, RECOMB 2012, Barcelona, Spain, April 21 - 24, 2012 ; proceedings

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Bibliographic Details
Format:	Conference Proceeding Book
Language:	English
Published:	Berlin [u.a.] Springer 2012
Series:	Lecture notes in bioinformatics 7262
Subjects:	Molekulare Bioinformatik Konferenzschrift > 2012 > Barcelona
Online Access:	Inhaltstext Inhaltsverzeichnis
Physical Description:	XVI, 372 S. graph. Darst.
ISBN:	3642296262 9783642296260

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MARC


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adam_text	IMAGE 1 TABLE O F C O N T E N T S PROTEIN STRUCTURE BY SEMIDEFINITE FACIAL REDUCTION 1 BABAK ALIPANAHI, NATHAN KRISLOCK, A L I GHODSI, H E N R Y WOLKOWICZ, LOGAN DONALDSON, AND MING L I ANCESTRY INFERENCE IN COMPLEX ADMIXTURES VIA VARIABLE-LENGTH MARKOV C H A I N LINKAGE MODELS 12 SIVAN BERCOVICI, JESSE M. RODRIGUEZ. MEGAN ELMORE, AND SERAFIM BATZOGLOU CHARGE G R O U P PARTITIONING IN BIOMOLECULAR SIMULATION 29 STEFAN CANZAR. M O H A M M E D EL-KEBIR, R E N E POOL, KHALED ELBASSIONI, ALPESH K. MALDE, A L A N E. MARK, D A A N P. GEERKE, LEEN STOUGIE, AND G U N N A R W. K L A U INCREASED METHYLATION VARIATION IN EPIGENETIC DOMAINS ACROSS CANCER TYPES 44 HECTOR CORRADA BRAVO ESTIMATING T H E ACCURACY OF MULTIPLE ALIGNMENTS A N D ITS USE IN P A R A M E T E R ADVISING 45 D A N F. DEBLASIO, TRAVIS J. WHEELER, AND J O H N D. KECEEIOGLU QUANTIFYING T H E DYNAMICS OF COUPLED NETWORKS OF SWITCHES A N D OSCILLATORS 60 MATTHEW R . FRANCIS AND ELANA J. FERTIG LOBSTR: A SHORT T A N D E M R E P E A T PROFILER FOR PERSONAL GENOMES 62 MELISSA GYMREK, DAVID GOLAN, SAHARON ROSSET, AND YANIV ERLICH HAP-SEQ: A N O P T I M A L ALGORITHM FOR HAPLOTYPE P H A S I N G W I T H I M P U T A T I O N USING SEQUENCING D A T A 64 D A N HE, B U H M HAN, A N D ELEAZAR E S K I N BALLAST: A BALL-BASED ALGORITHM FOR STRUCTURAL MOTIFS 79 L U HE. FABIO VANDIN, GOPAL PANDURANGAN, AND CHRIS BAILEY-KELLOGG EVOLUTION OF GENOME ORGANIZATION BY DUPLICATION A N D LOSS: A N ALIGNMENT APPROACH 94 PATRICK HOLLOWAY, K R I S T E R SWENSON, DAVID ARDELL, AND NADIA EL-MABROUK LOOP WEAVER - LOOP MODELING BY T H E WEIGHTED SCALING O F VERIFIED PROTEINS 113 DANIEL HOLTBY, SHUAI CHENG LI, AND M I N G L I HTTP://D-NB.INFO/1021047945 IMAGE 2 XIV TABLE OF CONTENTS A ROBUST METHOD FOR TRANSCRIPT QUANTIFICATION W I T H RNA-SEQ D A T A . . . . 127 YAN HUANG, Y I N HU, CORBIN D. JONES, J A M E S N. MACLEOD, DEREK Y. CHIANG, YUFENG LIU. J A N F. PRINS, AND JINZE L I U MODELING T H E BREAKAGE-FUSION-BRIDGE MECHANISM: COMBINATORICS A N D CANCER GENOMICS 148 MARCUS KINSELLA AND VIN.EET B A F N A TRUESIGHT: SELF-TRAINING ALGORITHM FOR SPLICE J U N C T I O N DETECTION USING RNA-SEQ 163 YANG LI, HONG-MEI LI, PAUL BURNS, M A R K BORODOVSKY, GENE E. ROBINSON, AND JIAN M A SYNTHETIC SEQUENCE DESIGN FOR SIGNAL LOCATION SEARCH 165 YAW-LING LIN, CHARLES WARD, AND STEVEN, SKIENA, T H E THREE-DIMENSIONAL ARCHITECTURE OF A BACTERIAL GENOME A N D I T S ALTERATION BY GENETIC P E R T U R B A T I O N 180 MARC A . MARTI-REN,OM, DISCOVERY OF COMPLEX GENOMIC REARRANGEMENTS IN CANCER USING HIGH-THROUGHPUT SEQUENCING 181 ANDREW MCPHERSON, CHUNXIAO WU,, ALEXANDER WYATT, SOHRAB SHAH, COLIN COLLINS, AND S. CENK SAHINALP NETWORK-BASED PREDICTION A N D ANALYSIS OF HIV DEPENDENCY FACTORS . . . . 183 T.M. MURALI, MATTHEW D. DYER, DAVID BADGER. BRETT M. TYLER, AND MICHAEL G. KATZE STRUCTURE-GUIDED DEIMMUNIZATION OF T H E R A P E U T I C PROTEINS 184 ANDREW S. PARKER, KARL E. GRISWOLD,, AND, CHRIS BAILEY-KELLOGG EVIDENCE FOR WIDESPREAD ASSOCIATION OF M A M M A L I A N SPLICING A N D CONSERVED LONG-RANGE R N A STRUCTURES 199 DMITRI, PERVOUCHINE, EKA,TERI;NA KHRARNEEVA, MARINA, PICHUGINA, OLEXII NIKOLA,IENKO, MIKHAIL G ELF AND, P E T R RUBTSOV, AND ANDREI MIRONOV P A T H S E T GRAPHS: A NOVEL APPROACH FOR COMPREHENSIVE UTILIZATION OF PAIRED READS IN GENOME ASSEMBLY 200 SON, K. PHARN, D M I T R Y ANTIPOV, ALEXANDER SIROTKIN, GLENN TESLER, PAVEL A . PEVZNER, AND M A X A . ALEKSEYEV FINDING MAXIMUM COLORFUL SUBTREES IN PRACTICE 213 I M R A N RAUF. FLORIAN RASCHE, FRA.NGOIS NICOLAS, AND SEBASTIAN BOCKER RECOVERING T H E TREE-LIKE TREND OF EVOLUTION DESPITE EXTENSIVE LATERAL GENETIC TRANSFER: A PROBABILISTIC ANALYSIS 224 SEBASTIEN ROCH AND, SAGI S N I R IMAGE 3 TABLE OF CONTENTS X V R E S Q U E : NETWORK REDUCTION USING SEMI-MARKOV R A N D O M WALK SCORES FOR EFFICIENT QUERYING OF BIOLOGICAL NETWORKS (EXTENDED ABSTRACT) 239 SAYED M O H A M M A D EBRAHIM SAHRAEIAN AND B Y U N G - J U N YOON DETECTING SNP-INDUCED STRUCTURAL CHANGES IN RNA: APPLICATION T O DISEASE STUDIES 241 RAHELEH SALARI, CHAVA KIMCHI-SARFATY, MICHAEL M. GOTTESMAN, AND TERESA M. PRZYTYCKA A MODEL FOR BIASED FRACTIONATION AFTER WHOLE GENOME DUPLICATION . . . . 244 DAVID SANKOFF, CHUNFANG ZHENG, AND BAOYONG WANG E X A C T P A T T E R N MATCHING FOR R N A S T R U C T U R E ENSEMBLES 245 CHRISTINA SCHMIEDL, MATHIAS MOHL, STEFFEN HEYNE, MIKA A M I T , GAD M. LANDAU. SEBASTIAN WILL, A N D R O L F BACKOFEN RECONSTRUCTING BOOLEAN MODELS OF SIGNALING 261 RODED SHARAN AND RICHARD M. K A R P ALIGNMENT-FREE SEQUENCE COMPARISON BASED O N NEXT GENERATION SEQUENCING READS: E X T E N D E D A B S T R A C T 272 K A I SONG, JIE REN, ZHIYUAN ZHAI, X U E M E I LIU, MINGHUA DENG, AND FENGZHU S U N DIFFERENTIAL OESTROGEN RECEPTOR BINDING IS ASSOCIATED W I T H CLINICAL OUTCOME IN BREAST CANCER 286 R O R Y STARK SIMULTANEOUS RECONSTRUCTION OF MULTIPLE SIGNALING P A T H W A Y S VIA T H E PRIZE-COLLECTING STEINER FOREST P R O B L E M 287 NURCAN TUNCBAG, ALFREDO BRAUNSTEIN, ANDREA PAGNANI, SHAO-SHAN CAROL HUANG, JENNIFER CHAYES, CHRISTIAN BORGS, RICCARDO ZECCHINA, A N D E R N E S T FRAENKEL FUNCTION-FUNCTION CORRELATED MULTI-LABEL P R O T E I N FUNCTION PREDICTION OVER INTERACTION NETWORKS 302 H U A WANG, HENG HUANG, AND CHRIS DING PREDICTING PROTEIN-PROTEIN INTERACTIONS FROM MULTIMODAL BIOLOGICAL D A T A SOURCES VIA NONNEGATIVE M A T R I X TRI-FACTORIZATION 314 H U A WANG, HENG HUANG, CHRIS DING, AND FEIPING N I E CNVEM: COPY N U M B E R VARIATION DETECTION USING UNCERTAINTY OF R E A D MAPPING 326 ZHANYONG WANG, FARHAD HORMOZDIARI, W E N - Y U N YANG, ERAN HALPERIN. AND ELEAZAR E S K I N IMAGE 4 XVI TABLE OF CONTENTS STRUCTURE-BASED WHOLE GENOME REALIGNMENT REVEALS M A N Y NOVEL NON-CODING RNAS , 341 SEBASTIAN WILL. MICHAEL YU. AND BONNIE BERGER PROBABILISTIC INFERENCE OF VIRAL QUASISPECIES SUBJECT T O RECOMBINATION 342 OSVALDO ZAGORDI. ARRRVIN TDPFER, SANDFLY A. PRABHAKARAN. VOLKER ROTH. EVAN HALPERIN. AND NIKO BEERENWINKEL SIMULTANEOUSLY LEARNING DNA MOTIF ALONG WITH ITS POSITION A N D SEQUENCE R A N K PREFERENCES T H R O U G H E M ALGORITHM 355 ZHIZHUO ZHANG. CHENG WEI CLUING. WILLY HUGO. EDWIN CHEUNG, AND WING-KIN, SUNG A U T H O R I N D E X 371
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spelling	Research in computational molecular biology 16th annual international conference, RECOMB 2012, Barcelona, Spain, April 21 - 24, 2012 ; proceedings Benny Chor (ed.) Berlin [u.a.] Springer 2012 XVI, 372 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier Lecture notes in bioinformatics 7262 Molekulare Bioinformatik (DE-588)4531334-9 gnd rswk-swf (DE-588)1071861417 Konferenzschrift 2012 Barcelona gnd-content Molekulare Bioinformatik (DE-588)4531334-9 s DE-604 Chor, Benny Sonstige oth RECOMB 16 2012 Barcelona Sonstige (DE-588)1022078186 oth Erscheint auch als Online-Ausgabe 978-3-642-29627-7 Lecture notes in bioinformatics 7262 (DE-604)BV000000607 7262 X:MVB text/html http://deposit.dnb.de/cgi-bin/dokserv?id=3997250&prov=M&dok_var=1&dok_ext=htm Inhaltstext DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=024977040&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis
spellingShingle	Research in computational molecular biology 16th annual international conference, RECOMB 2012, Barcelona, Spain, April 21 - 24, 2012 ; proceedings Lecture notes in bioinformatics Molekulare Bioinformatik (DE-588)4531334-9 gnd
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title	Research in computational molecular biology 16th annual international conference, RECOMB 2012, Barcelona, Spain, April 21 - 24, 2012 ; proceedings
title_auth	Research in computational molecular biology 16th annual international conference, RECOMB 2012, Barcelona, Spain, April 21 - 24, 2012 ; proceedings
title_exact_search	Research in computational molecular biology 16th annual international conference, RECOMB 2012, Barcelona, Spain, April 21 - 24, 2012 ; proceedings
title_full	Research in computational molecular biology 16th annual international conference, RECOMB 2012, Barcelona, Spain, April 21 - 24, 2012 ; proceedings Benny Chor (ed.)
title_fullStr	Research in computational molecular biology 16th annual international conference, RECOMB 2012, Barcelona, Spain, April 21 - 24, 2012 ; proceedings Benny Chor (ed.)
title_full_unstemmed	Research in computational molecular biology 16th annual international conference, RECOMB 2012, Barcelona, Spain, April 21 - 24, 2012 ; proceedings Benny Chor (ed.)
title_short	Research in computational molecular biology
title_sort	research in computational molecular biology 16th annual international conference recomb 2012 barcelona spain april 21 24 2012 proceedings
title_sub	16th annual international conference, RECOMB 2012, Barcelona, Spain, April 21 - 24, 2012 ; proceedings
topic	Molekulare Bioinformatik (DE-588)4531334-9 gnd
topic_facet	Molekulare Bioinformatik Konferenzschrift 2012 Barcelona
url	http://deposit.dnb.de/cgi-bin/dokserv?id=3997250&prov=M&dok_var=1&dok_ext=htm http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=024977040&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA
volume_link	(DE-604)BV000000607
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