Statistical physics and topology of polymers with ramifications to structure and function of DNA and proteins: proceedings of the YITP workshop: a satellite meeting of STATPHYS 24, August 2 - August 6, 2010, Kyoto, Japan
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| Format: | Conference Proceeding Book |
| Language: | English |
| Published: |
Kyoto
Publ. Off., Progress of Theoretical Physics, Kyoto Univ.
2011
|
| Series: | Progress of theoretical physics
Supplement ; 191 |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Physical Description: | XI, 255 S. Ill., graph. Darst. |
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| 245 | 1 | 0 | |a Statistical physics and topology of polymers with ramifications to structure and function of DNA and proteins |b proceedings of the YITP workshop: a satellite meeting of STATPHYS 24, August 2 - August 6, 2010, Kyoto, Japan |c ed. by Tetsuo Deguchi ... |
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Record in the Search Index
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| adam_text | Ill
CONTENTS
Statistical Physics and Topology of Polymers with Ramifications
to Structure and Function of
DNA
and Proteins
Preface
...............................................
Tetsuo Deguchi,
Hisao Hayakawa. Koya Shimokawa,
Andrzej
Stasiak and Kyoichi Tsurusaki
і
DNA
Knots: Theory and Experiments
................... De Witt
Sumners
1
How Broken
DNA
Finds Its Template for Repair: A Computational
Approach
.........
Lutz R.
Gehlen,
Susan
M.
Gasser and Vincent
Dion
20
diramatili Topological
Transitions ...................................
............................ Christophe Lavelle,
Aurélieii Bancaud,
Pierre Recouvreux. Maria
Barbi,
Jean-Marc Victor and Jean-Louis Viovy 30
Mean-Field Theory of the Symmetry Breaking Model for X Chromosome
Inactivation
...................................
Antonio
Scialdone,
Mariano
Barbieri,
Deborah Pallotti and Mario
Nicodemi 40
Role of Topological Exclusion in Formation and Organization of
Chromosomal Territories
............ Julien Dorier
and
Andrzej
Stasiak
46
Taxonomy of
DNA
Conformations within Complex Nucleoprotein
Assemblies
....................
Dorothy Buck and Kenneth Lee Baker
55
Nullification of Small Knots
...........................................
............... Claus
Ernst. Anthony Montemayor and
Andrzej
Stasiak
66
Signed Unknotting Number and Knot Chirality Discrimination
via Strand Passage
..................................
Chris Soteros,
Kai Ishihara,
Koya Shimokawa, Michael Szafron and Mariel Vazquez
78
Testing the Use of Implicit Solvent in the Molecular Dynamics Modelling
of
DNA
Flexibility
................
Jonathan Mitchell and Sarah Harris
96
Evaluating Partition Functions for Multiscale Models of
DNA ........
................
Andreas
Hanke,
Stefan Giovan and Stephen D. Levene
109
Dimension of Ring Polymers in Melt Studied by Monte-Carlo Simulation
....................
Jiro
Suzuki, Atsushi
Takáno
and Yushu Matsushita
130
GPU Based Molecular Dynamics Simulations of Polymer Rings
in Concentrated Solution: Structure and Scaling
..................
.........................
Daniel Reith. Leonid Mirny and Peter Virnau
135
Universal Ratios in the Dynamics of Open and Closed Chains of
Linked Ring Polymers in Solution via Brownian Dynamics
........
...................................
Naoko
Kanaeda and Tetsuo Deguchi
146
IV
General
Polygonal
Length Dependence of the Linking Probability for
Ideal Random Polygons
...........................................
..............
Naomi Hirayama, Kyoichi Tsurusaki and Tetsuo Deguchi
154
Cumulative Shapes of Knotted Polymers
..............................
Eric J. Rawdon, Kenneth
C. Millett,
Vy T.
Tran
and
Andrzej Stasiak
165
A Study of the Entanglement in Systems with Periodic Boundary
Conditions
..............
Eleni
Panagiotou, Christos
Tzoumanekas,
Sofia Lambropoulou, Kenneth
C. Millett
and
Doros
N.
Theodorou
172
The Length Scale of 3-Space Knots, Ephemeral Knots, and Slipknots
in Random Walks
..................................
Kenneth
C. Millett
182
Probing the Entanglement and Locating Knots in Ring Polymers:
A Comparative Study of Different Arc Closure Schemes
...........
.................
Luca
Tubiana,
Enzo Orlandini
and
Cristian Micheletti
192
Knot Localization in a Flexible Polymer Confined in a Tube
...........
............................
Chihiro H. Nakajima and Takahiro Sakaue
205
Driven
Translocation
of Semi-Flexible Polymer under Strong Force
....................................
Takuya
Saito
and Takahiro Sakaue
210
Ideal, Best Packing, and Energy Minimizing Double Helices.
...
Jun
O Hara
215
On Transforming a Spatial Graph into a Plane Graph
......
Akio Kawauchi
225
Entanglement of Embedded Graphs
..................................
................
Toen
Castle, Myfanwy E. Evans and Stephen T. Hyde
235
Band Surgeries between Knots and Links with Small Crossing Numbers
.................................... Kai Ishihara
and Koya Shimokawa
245
Program
..................................................................
v
Author Index
............................................................. xi
|
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| spelling | Statistical physics and topology of polymers with ramifications to structure and function of DNA and proteins proceedings of the YITP workshop: a satellite meeting of STATPHYS 24, August 2 - August 6, 2010, Kyoto, Japan ed. by Tetsuo Deguchi ... Kyoto Publ. Off., Progress of Theoretical Physics, Kyoto Univ. 2011 XI, 255 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Progress of theoretical physics : Supplement 191 (DE-588)1071861417 Konferenzschrift gnd-content Deguchi, Tetsuo 1964- (DE-588)1019526645 edt Yukawa Institute for Theoretical Physics (Kyōto) Sonstige (DE-588)3017698-0 oth Statphys 24 2010 Cairns Sonstige (DE-588)16179728-3 oth Progress of theoretical physics Supplement ; 191 (DE-604)BV002573679 191 Digitalisierung UB Bayreuth application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=024744588&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Statistical physics and topology of polymers with ramifications to structure and function of DNA and proteins proceedings of the YITP workshop: a satellite meeting of STATPHYS 24, August 2 - August 6, 2010, Kyoto, Japan Progress of theoretical physics |
| subject_GND | (DE-588)1071861417 |
| title | Statistical physics and topology of polymers with ramifications to structure and function of DNA and proteins proceedings of the YITP workshop: a satellite meeting of STATPHYS 24, August 2 - August 6, 2010, Kyoto, Japan |
| title_auth | Statistical physics and topology of polymers with ramifications to structure and function of DNA and proteins proceedings of the YITP workshop: a satellite meeting of STATPHYS 24, August 2 - August 6, 2010, Kyoto, Japan |
| title_exact_search | Statistical physics and topology of polymers with ramifications to structure and function of DNA and proteins proceedings of the YITP workshop: a satellite meeting of STATPHYS 24, August 2 - August 6, 2010, Kyoto, Japan |
| title_full | Statistical physics and topology of polymers with ramifications to structure and function of DNA and proteins proceedings of the YITP workshop: a satellite meeting of STATPHYS 24, August 2 - August 6, 2010, Kyoto, Japan ed. by Tetsuo Deguchi ... |
| title_fullStr | Statistical physics and topology of polymers with ramifications to structure and function of DNA and proteins proceedings of the YITP workshop: a satellite meeting of STATPHYS 24, August 2 - August 6, 2010, Kyoto, Japan ed. by Tetsuo Deguchi ... |
| title_full_unstemmed | Statistical physics and topology of polymers with ramifications to structure and function of DNA and proteins proceedings of the YITP workshop: a satellite meeting of STATPHYS 24, August 2 - August 6, 2010, Kyoto, Japan ed. by Tetsuo Deguchi ... |
| title_short | Statistical physics and topology of polymers with ramifications to structure and function of DNA and proteins |
| title_sort | statistical physics and topology of polymers with ramifications to structure and function of dna and proteins proceedings of the yitp workshop a satellite meeting of statphys 24 august 2 august 6 2010 kyoto japan |
| title_sub | proceedings of the YITP workshop: a satellite meeting of STATPHYS 24, August 2 - August 6, 2010, Kyoto, Japan |
| topic_facet | Konferenzschrift |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=024744588&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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