Genetics, genomics and breeding of potato:
Saved in:
| Format: | Book |
|---|---|
| Language: | English |
| Published: |
Boca Raton, FL [u.a.]
CRC Press [u.a.]
2011
|
| Series: | Genetics, genomics and breeding of crop plants
|
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Item Description: | Includes bibliographical references and index |
| Physical Description: | XXX, 296 S. Ill., graph. Darst. |
| ISBN: | 9781578087150 |
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MARC
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| 245 | 1 | 0 | |a Genetics, genomics and breeding of potato |c Ed. James M. Bradeen... |
| 264 | 1 | |a Boca Raton, FL [u.a.] |b CRC Press [u.a.] |c 2011 | |
| 300 | |a XXX, 296 S. |b Ill., graph. Darst. | ||
| 336 | |b txt |2 rdacontent | ||
| 337 | |b n |2 rdamedia | ||
| 338 | |b nc |2 rdacarrier | ||
| 490 | 0 | |a Genetics, genomics and breeding of crop plants | |
| 500 | |a Includes bibliographical references and index | ||
| 650 | 4 | |a Potatoes |x Genetics | |
| 650 | 4 | |a Potatoes |x Genome mapping | |
| 650 | 4 | |a Potatoes |x Breeding | |
| 700 | 1 | |a Bradeen, James Mathew |e Sonstige |4 oth | |
| 856 | 4 | 2 | |m HEBIS Datenaustausch |q application/pdf |u http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=022579823&sequence=000004&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |3 Inhaltsverzeichnis |
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Record in the Search Index
| _version_ | 1804145732749361152 |
|---|---|
| adam_text | GENETICS, GENOMICS
AND BREEDING OF
POTATO
Editors
James M Bradeen
Department of Plant Pathology
University of Minnesota
St Paul, Minnesota
USA
Chittaranjan Kole
Department of Genetics and Biochemistry
Clemson University
Clemson, SC
USA
CRC Press
I Taylor amp; Francis Croup
an informa business
»w crcpress com
6000 Broken Sound Parkway, NW
Suite 300, Boca Raton, FL 33487
270 Madison Avenue
New York, NY 10016
2 Park Square, Milton Park
Abingdon, Oxon OX 14 4RN, UK
Science Publishers
Enfield, New Hampshire
Contents
Dedication v
Preface to the Series vii
Preface to the Volume xiii
List of Contributors xxiii
Abbreviations xxvii
1 Introduction to Potato 1
J M Bradeen and K G Haynes
11A Brief History of the Potato 2
1 2 Potato Morphology 4
1 3 Potato Taxonomy, Related Species, and Crossability 4
131 The GenePool Concept 7
132 The Endosperm Balance Number (EBN) 7
133 Predicted Phylogenetic Relationships 9
1 4 Potato Production Statistics 10
1 5 Potato Nutritional Content 13
1 6 Future Prospects for Potato Research and Production 15
References 15
2 Classical Genetics and Traditional Breeding 20
D Carputo and L Frusciante
2 1 Introduction 21
211 Genetic Characteristics 21
212 Reproductive Characteristics Relevant for Breeding 24
2121 Production of In Gametes 24
2122 Barriers to Interspecific Hybridization 25
2 2 Conventional Breeding Methods 28
221 The Tetraploid 4EBN Level 28
222 The Diploid 2EBN Level 31
2 3 Breeding Objectives 34
References 37
3 Molecular Breeding for Potato Improvement 41
D De Koeyer, H Chen and V Gustafson
3 1 Introduction: Molecular Breeding—The Beginning of 42
a New Era
xvi Genetics, Genomics and Breeding of Potato
3 2 Germplasm and Variety Characterization 43
321 Characterization of Solanum Gene Pools 43
322 Genealogy and Diversity of Modern Varieties 44
323 Distinctiveness, Uniformity, and Stability 45
3 3 Marker-assisted Gene Introgression 46
331 Genome-wide Markers for Negative Selection 46
332 The Toolbox of Available Markers 47
333 Marker-assisted Selection in Potato 47
334 Advances in Marker Technology for Autotetraploids
3 4 Breeding Strategies Incorporating DNA Markers 50
341 Pre-breeding with DNA Markers 50
342 Parent Development with DNA Markers 51
343 Early-generation Selection with DNA Markers 51
344 Advanced-generation Selection with DNA Markers 54
3 5 Transgenic Breeding 55
3 6 Conclusions 58
References 59
4 Molecular Linkage Maps: Strategies, Resources and 68
Achievements
H Mann, M Iorizzo, L Gao, N D Agostino, D Carputo,
M L Chiusano and J M Bradeen
4 1 Introduction 69
4 2 Brief History of Mapping Efforts in Potato 69
4 3 Evolution of Marker Types: RFLPs to SNPs 72
431 RFLP Markers 72
432 PCR-based Markers 75
433 DArT Markers 75
434 SNP Markers 76
4 4 Potato Mapping Populations: Structures and Strategies 76
4 5 Linkage Maps as Tools for Comparative Genomics: 78
Accessing Biodiversity
451 Wild Potato Species as Sources of Genes for Potato 78
Improvement
452 Documenting and Capitalizing upon Genome Synteny 79
453 Genome Mapping in S bulbocastanum 80
4531A DArT-based Linkage Map for S bulbocastanum 81
4532 Multi-species Comparison of Genome Structure 83
Based on Mapped DArT Marker Sequences
References 86
Contents xvii
5 Mapping and Tagging of Simply Inherited Traits 90
J C Kuhl
5 1 Introduction 91
5 2 Virus Resistance 96
5 3 Nematode Resistance 101
5 4 Late Blight Resistance 104
5 5 Conclusions 107
References 108
6 Mapping Complex Potato Traits 113
G J Bryan
6 1 Introduction 114
6 2 Complex Traits in Potato 114
6 3 Quantitative Pest and Disease Resistance 115
631 Late Blight Resistance 116
632 Potato Cyst Nematode Resistance 119
633 Trichome-mediated Insect Resistance 121
634 Glycoalkaloid-mediated Insect Resistance 122
6 4 Tuber Life-cycle Traits: Dormancy and Tuberization 123
6 5 Tuber Morphological Traits: Tuber Shape and Eye Depth 125
6 6 Tuber Quality Traits 127
661 Dry Matter 127
662 Cold Sweetening 127
663 Tuber Yield and Starch Content 128
6 7 How Can the Genes for Potato Quantitative Traits be 129
Identified?
References 130
7 Population Genetics and Association Mapping 133
C Gebhardt
7 1 Introduction 133
7 2 Potato Populations for Association Mapping 136
7 3 Phenotypic Variation 139
7 4 Detection and Scoring of DNA Variation 139
741 Microsatellite Markers 140
742 Single Strand Conformational Polymorphism Markers 141
(SSCP)
743 Amplified Fragment Length Polymorphism (AFLP) 142
Markers
744 Candidate Gene Markers: Nucleotide Binding Site 142
(NBS) Profiling
745 Single Nucleotide Polymorphism (SNP) Markers 143
746 Other PCR-based Markers 143
7 5 Association Test Statistics 144
xviii Genetics, Genomics and Breeding of Potato
7 6 Association Studies in Potato 145
7 7 Conclusions and Outlook 147
References 148
8 Cloning of Late Blight Resistance Genes: Strategies and 153
Progress
J M Bradeen
8 1 Introduction 154
8 2 Potato R Gene Cloning Strategies 155
821 Large Insert Chromosome Walking Approaches 155
822 Candidate Gene Approaches 157
8221 Identifying Candidate R Genes Based on Structure 158
82211 Resistance Gene Analogs (RGAs) 158
82212 NBS Profiling 159
8222 Identifying Candidate R Genes Based on Function 161
823 Cross-species Comparative Genomics Approaches 162
8231 Use of Reference Heterologous Sequence 162
8232 Isolation of R Genes by Homology 165
8 3 Progress Towards Cloning Late Blight R Genes: A Timeline 165
831 The Cloning of Rl— 2002 165
832 The Cloning of KB—2003 167
833 The Cloning of Rpi-blbl, an Allele of the KB Locus—2003 169
834 The Cloning of R3a—2005 170
835 The Cloning of Rpi-blbl—2005 171
836 The Cloning of RS°, Rpi-stol, and Rpi-ptal— 2006, 2008 172
837 The Cloning of Rpi-vntl l and Rpi-vntl 3—2009 174
838 The Cloning of Rpi-blb3, Rpi-abpt, Rl, and R2-like—2009 176
839 The Cloning of Rpi-btl—-2009 177
8 4 Future Prospects 178
References 179
9 Application of Molecular Cytogenetics in Fundamental 184
and Applied Research of Potato
T Gavrilenko
9 1 Introduction 184
9 2 FISH Karyotyping and Physical Mapping of Potato 185
Chromosomes
921 FISH-based Chromosome Identification and Integration 185
of Chromosomal and Genetic Maps of Potato
922 Comparative Mapping of Potato and Related Species 188
using BAC-FISH
923 FISH Mapping of Chromosomal Domains and Various 188
Repetitive Sequences
924 Physical Mapping of Genes 191
Contents xix
9 3 Studying Natural and Artificial Polyploids by Genomic 191
In Situ Hybridization
931 Studying Polyploidy in Potato Species—Traditional and 192
Molecular Cytogenetics
9311 Polyploid Complexes in Relation to Species 192
Distribution and Genetic Diversity
9312 Traditional Concepts of Types and Origin of 196
Polyploid Potato Species
9313 Genome Evolution of Potato Polyploids and 198
Their Relationships with Putative Diploid
Progenitors—Genome Research
93131 Molecular Phylogenetics 198
93132 GISH and FISH of Potato Polyploid 199
Species
9 4 Practical Applications of Molecular Cytogenetics 201
References 202
10 Functional Genomics: Transcriptomics 207
X -Q Li
10 1 Introduction 207
10 2 Transcriptomics Technologies and Resources Generated 209
10 2 1 Expressed Sequence Tags 209
10 2 2 Microarrays 213
10 221 cDNA Microarrays 213
10 222 Oligo-Based Microarrays 214
10 223 Tomato Heterologous Microarray 215
10 2 3 PCR-Based Methods 216
10 231 Serial Analysis of Gene Expression 216
10 232 cDNA-AFLP Analysis and Differential 216
Display RT-PCR
10 2 4 Emerging Technologies 217
10 241 Next Generation Sequencing and Other 217
Nanotechnologies
10 242 High-Resolution DNA Melting Curve (HRM) 218
Analysis
10 2 5 Online Resources 218
10 3 Regulation of the Transcriptome 220
10 3 1 Effects of Ploidy on Gene Transcription 220
10 3 2 Gene Ontogeny Categories of Genes Expressed at 220
Different Ploidies and under Different Environments
10 4 Application of Transcriptomics Resources 221
10 4 1 Transcriptome QTL Mapping 221
10 4 2 Gene Discovery 222
xx Genetics, Genomics and Breeding of Potato
10 4 3 Functional Genomics-Assisted Breeding 223
10 5 Concluding Remarks and Prospects 224
References 225
11 Proteomics and Metabolomics 229
A D Hegeman
11 1 Introduction 229
11 2 Methodology 230
11 2 1 Proteomics 231
11 211 MS and MS/MS Protein Identification 232
11 212 Gel-free Proteomics 234
11 213 Protein Quantification 235
11 214 Other Advances in Shotgun Proteomics 235
11 215 Advances in Gel-based Proteomics 236
11 216 Extracting Proteins from Potato Tissues 236
11 2 2 Metabolomics 236
11 221 Identifying Metabolites by MS 238
11 222 Quantifying Metabolites by MS 238
11 223 Data Analysis 239
11 3 Current State of (Untargeted) Potato Proteomics and 239
Metabolomics
11 3 1 Proteomics 239
11 311 Tuber Skin Proteome 240
11 312 Sub-cellular Tuber Proteomes 242
11 313 Tuber Development 242
11 3 2 Metabolomics 243
11 321 Tuber Metabolome Changes with Growth 244
Medium
11 322 Metabolomics and Phenotyping 244
11 323 Metabolome vs Transcriptome: Correlation 245
and Predictive Power
11 324 Assessing Metabolic Consequences of 245
Transgene Insertions
11 325 Metabolic Flux 246
11 4 Potato Protein and Metabolite Quality Traits 246
11 4 1 Tuber Quality Traits-by Fingerprinting 246
11 4 2 Tuber Quality Traits-by Metabolic Profiling 247
11 4 3 Biotic and Abiotic Stress 250
11 5 Evaluation of Potato Tuber Nutrition, Safety and Genetic 252
Modifications
11 6 Conclusions 253
References 253
Contents xxi
12 Future Challenges and Prospects 260
T Wendt and E Mullins
12 1 Introduction 260
12 2 Challenges 261
12 3 Prospects 263
12 3 1 In Response to Climate Change 264
12 3 2 In Response to Increasing Management Costs 265
12 3 3 Adopting Crop Modification Technologies 266
12 3 4 In Response to Legislative Issues 266
12 3 5 Novel Applications 268
12 4 Conclusion 270
References 272
Index 277
Color Plate Section 287
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| series2 | Genetics, genomics and breeding of crop plants |
| spelling | Genetics, genomics and breeding of potato Ed. James M. Bradeen... Boca Raton, FL [u.a.] CRC Press [u.a.] 2011 XXX, 296 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Genetics, genomics and breeding of crop plants Includes bibliographical references and index Potatoes Genetics Potatoes Genome mapping Potatoes Breeding Bradeen, James Mathew Sonstige oth HEBIS Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=022579823&sequence=000004&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Genetics, genomics and breeding of potato Potatoes Genetics Potatoes Genome mapping Potatoes Breeding |
| title | Genetics, genomics and breeding of potato |
| title_auth | Genetics, genomics and breeding of potato |
| title_exact_search | Genetics, genomics and breeding of potato |
| title_full | Genetics, genomics and breeding of potato Ed. James M. Bradeen... |
| title_fullStr | Genetics, genomics and breeding of potato Ed. James M. Bradeen... |
| title_full_unstemmed | Genetics, genomics and breeding of potato Ed. James M. Bradeen... |
| title_short | Genetics, genomics and breeding of potato |
| title_sort | genetics genomics and breeding of potato |
| topic | Potatoes Genetics Potatoes Genome mapping Potatoes Breeding |
| topic_facet | Potatoes Genetics Potatoes Genome mapping Potatoes Breeding |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=022579823&sequence=000004&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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