Plant polysaccharides, biosynthesis and bioengineering:
Saved in:
| Format: | Book |
|---|---|
| Language: | English |
| Published: |
Chichester
Wiley-Blackwell
2011
|
| Edition: | 1. publ. |
| Series: | Annual plant reviews
41 |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Item Description: | Includes bibliographical references and index |
| Physical Description: | XXXVII, 464 S. Ill., graph. Darst. |
| ISBN: | 9781405181723 |
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| 245 | 1 | 0 | |a Plant polysaccharides, biosynthesis and bioengineering |c ed. by Peter Ulvskov |
| 250 | |a 1. publ. | ||
| 264 | 1 | |a Chichester |b Wiley-Blackwell |c 2011 | |
| 300 | |a XXXVII, 464 S. |b Ill., graph. Darst. | ||
| 336 | |b txt |2 rdacontent | ||
| 337 | |b n |2 rdamedia | ||
| 338 | |b nc |2 rdacarrier | ||
| 490 | 1 | |a Annual plant reviews |v 41 | |
| 500 | |a Includes bibliographical references and index | ||
| 650 | 4 | |a Polysaccharides | |
| 650 | 4 | |a Botanical chemistry | |
| 700 | 1 | |a Ulvskov, Peter |e Sonstige |4 oth | |
| 830 | 0 | |a Annual plant reviews |v 41 |w (DE-604)BV012859776 |9 41 | |
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| _version_ | 1804143816045756416 |
|---|---|
| adam_text | Titel: Plant polysaccharides, biosynthesis and bioengineering
Autor: Ulvskov, Peter
Jahr: 2011
CONTENTS
Preface xix
Dedication xxiii
Contributors xxv
1 Cell Wall Polysaccharide Composition and Covalent Crosslinking 1
Stephen C. Fry
1.1 Remit 2
1.1.1 Some definitions 2
1.1.1.1 Pectins 2
1.1.1.2 Hemicelluloses 3
1.1.1.3 Crosslinks 3
1.1.1.4 Non-polysaccharide components 3
1.1.1.5 Primary wall 3
1.1.1.6 Secondary wall 6
1.2 The classic primary cell walls of dicots 6
1.2.1 Pectins 6
1.2.1.1 Homogalacruronan domains 7
1.2.1.2 Rhamnogalacturonan-I domains 8
1.2.1.3 Rhamnogalacturonan-II domains 12
1.2.1.4 Xylogalacturonan domains 12
1.2.2 Hemicelluloses 12
1.2.2.1 Xyloglucans 13
1.2.2.2 Xylans 15
1.2.2.3 Mannans 15
1.2.2.4 Glucuronomannans 15
1.2.3 Cellulose 16
1.3 Secondary cell walls 16
1.4 Taxonomic consideration of primary cell walls 18
1.4.1 Poalean primary cell walls 18
1.4.1.1 Poalean xyloglucans 18
1.4.1.2 Poalean (feruloylated) xylans 19
1.4.1.3 Poalean mixed-linkage glucans 19
1.4.1.4 Other poalean polysaccharides 20
1.4.2 Taxonomically restricted features of non-poalean
angiosperm walls 21
1.4.3 Cell walls of non-angiosperms 21
1.4.3.1 Charophytic algae 21
1.4.3.2 Bryophytes 22
IX
K ¦ Contents
1.4.3.3 Lycopodiophytes 23
1.4.3.4 Euphyllophytic pteridophytes 24
1.4.3.5 Gymnosperms 24
1.5 Covalent bonds between wall polysaccharides 24
1.5.1 Glycosidic bonds joining polysaccharides into
molecular trees 25
1.5.2 Glycosidic bonds forming true ( lateral ) crosslinks
between polysaccharides? 26
1.5.3 Oxidative coupling products as crosslinks or
intrapolymeric loops 27
1.5.4 Uronoyl esters and uronoyl amides 27
1.5.5 Borate diesters 28
1.6 Methodology 29
1.6.1 Specific and non-specific radiolabelling in vivo 29
1.6.2 Chemical and enzymic dissection of wall
polysaccharides 32
1.6.3 Fractionation and characterization of mono- and
oligosaccharides 33
1.6.3.1 Paper chromatography (PC) 33
1.6.3.2 Thin-layer chromatography (TLC) 34
1.6.3.3 Paper electrophoresis (PE) 34
1.6.3.4 High-pressure liquid chromatography
(HPLC) 35
1.6.3.5 Methylation analysis and gas
chromatography (GC) 35
1.6.3.6 Mass spectrometry (MS) 35
1.7 Conclusions 36
Acknowledgements 36
References 36
2 Dissection of Plant Cell Walls by High-throughput Methods 43
Stajfan Persson, Iben Sarensen, Isabel Moller, William Willats and
Markus Pauly
2.1 Introduction 44
2.2 Enzyme fingerprinting 44
2.3 Structural determination of oligosaccharides 47
2.4 Fourier transform infrared spectroscopy (FTIR) 50
2.5 Microarray-based polymer profiling 52
2.6 Additional high-throughput methods 55
2.7 Future perspectives 57
References 58
3 Approaches to Chemical Synthesis of Pectic Oligosaccharides 65
Sergey A. Nepogodiev, Robert A. Field and Iben Damager
3.1 Introduction 66
Contents ¦ XI
3.2 Pectic polysaccharides: structures and availability of
fragments from natural sources 66
3.2.1 Structures 66
3.2.2 Preparation of pectic oligosaccharides by cleavage
of polysaccharides 67
3.2.2.1 Homogalacturonan fragments 67
3.2.2.2 Rhamnogalacturonan-I fragments 68
3.3 Reported preparations of pectic oligosaccharides by
chemical synthesis 69
3.4 Oligosaccharide synthesis - basic principles and key
features 71
3.4.1 General points 71
3.4.2 Main considerations in chemical synthesis of
complex oligosaccharides and polysaccharides 71
3.5 Synthesis of homogalacturonan fragments 74
3.5.1 Synthesis of oligogalacturonides by direct
glycosylation with galacturonic acid derivatives 75
3.5.2 Synthesis of oligogalacturonides by a late stage
oxidation approach 76
3.5.2.1 The convergent block synthesis
approach 76
3.5.2.2 The reiterative synthesis strategy 78
3.3.2.3 Synthesis of selectively methyl-esterified
oligogalacturonic acids 78
3.6 Rhamnogalacruronan-II fragments 81
3.7 Rhamnogalacturonan-I fragments 86
3.8 Future perspective 88
References 89
4 Annotating Carbohydrate-active Enzymes in Plant Genomes:
Present Challenges 93
Pedro M. Coutinho and Bernard Henrissat
4.1 Introduction 93
4.2 CAZy: what s behind the name? 96
4.3 Plant CAZymes: the quest for function 97
4.4 Plant CAZymes: problems in functional annotation 103
References 105
5 Biosynthesis of Plant Cell Wall and Related Polysaccharides by
Enzymes of the GT2 and GT48 Families 109
Bruce A. Stone, Andrew K. Jacobs, Maria Hrmova, Rachel A. Burton
and Geoffrey B. Fincher
5.1 Introduction 110
5.2 Structures and distribution of B-D-glucans synthesized by
GT2 and GT48 enzymes 112
xii ¦ Contents
5.3 Early biochemical approaches to plant fJ-D-glucan
synthases 119
5.4 Functional genomics and the identification of GT2
cellulose synthases 121
5.4.1 Cellulose synthesis by embryophytes 121
5.4.2 Cellulose synthesis by Gluconoacetobacter xylinus
(formerly Acetobacter xylinus) 124
5.4.3 Cellulose synthesis by Agrobacteriutn tumefaciens 125
5.5 Identification of the functions of other GT2 enzymes from
plants 125
5.6 Comparative genomics and the identification of GT2
(l,3;l,4)-P-D-glucan synthases 127
5.7 Genes for GT2 synthases for bacterial (l,3)-|3-D-glucans
and related polysaccharides 130
5.7.1 Curdlan 130
5.7.2 Cyclic (l,3;l,6)-(}-D-glucan from Bradyrhizobium
japonicum 131
5.7.3 Capsular polysaccharides from Pasteurella
multocida 131
5.7.4 Chitin 131
5.8 Enzymic properties and catalytic mechanisms of the GT2
proteins 133
5.8.1 Topology 133
5.8.2 The catalytic region 133
5.8.3 3D structures 134
5.8.4 Catalytic mechanisms 137
5.8.5 Specification of linkage position in P-glycans 138
5.8.6 Bifunctional GT2 3-Glycan Synthases 139
5.8.7 Chain initiation, direction of chain elongation,
and chain termination 140
5.9 Subcellular locations of GT2 enzymes in plants 142
5.10 Proteomics and biochemical approaches to the
identification of GT48 (l,3)-|3-D-glucan synthases
from plants 142
5.11 Enzymic properties of the GT48 proteins 146
5.11.1 Topology 146
5.11.2 Catalytic mechanisms 147
5.12 Future role of biochemistry in the characterization of GT2
and GT48 enzymes 147
5.12.1 Biochemistry and the definition of gene function 148
5.12.2 Post-translational modifications of glycosyl
transferases 149
5.12.3 Protein-protein interactions 150
5.13 Applications of modified levels of plant f3-r glucans 151
Acknowledgements 153
References 153
Contents ¦ XIII
6 Glycosyltransferases of the GT8 Family 167
Yanbin Yin, Debra Mohnen, Ivana Gelineo-Albersheim, Ying Xu and
Michael G. Hahn
6.1 Introduction 168
6.2 Phylogeny of family GT8 170
6.3 GT8 clades related to plant cell wall
polysaccharide synthesis 188
6.3.1 Galacturonosyltransferase (GAUT) clade 188
6.3.1.1 Phylogeny of GAUT clade 189
6.3.1.2 Function of GAUT proteins 190
6.3.2 Galacturonosyl transferase-like (GATL) clade 192
6.3.2.1 Phylogeny of GATL clade 193
6.3.2.2 Function of GATL proteins 193
6.4 GT8 clades not related to cell wall synthesis 196
6.4.1 Plant glycogenin-like (PGSIP) clades 197
6.4.1.1 Phylogeny of PGSIP clades 198
6.4.1.2 Function of PGSIP proteins 200
6.4.2 Galactinol synthase (GolS) clade 201
6.4.2.1 Phylogeny of GolS clade 202
6.4.2.2 Function of GolS proteins 204
6.5 Conclusions 205
Acknowledgements 205
References 205
7 Genes and Enzymes of the GT31 Family: Towards Unravelling
the Function(s) of the Plant Glycosyltransferase Family
Members 213
Jack Egelund, Miriam Ellis, Monika Doblin, Yongmei Qu
and Antony Back
7.1 Introduction 214
7.2 Identification and characterization of the first p-(l,3)-GalTs 215
7.2.1 The first P-(1,3)-GT family members of non-plant
origin 215
7.2.2 The first B-(l,3)-GaiTs of plant origin 216
7.3 Grouping of accessions based on their phylogenetic
relationship 216
7.4 Conserved motifs and implications for catalysis 221
7.4.1 Motif of the catalytic domain belongs to the GT-A
fold superfamily 221
7.4.2 Sequence analysis and functional assignment of
conserved motifs 222
7.4.3 Implication of different substrate specificity for
P-(l,3)-GTs 223
7.5 Domains conserved within the plant-specific clades 223
7.5.1 Galactosyltransferase dornam-containing clades 7
and 10 225
xiv ¦ Contents
7.5.2 Galactoside-binding lectin (galectin) domain
specific to clade 7 225
7.5.3 Domain of unknown function (DUF604) in
clade 1 227
7.5.4 No identifiable domains in accessions of clade 11 228
7.6 Conclusions 228
Acknowledgements 229
References 229
8 Glycosyltransferases of the GT34 and GT37 Families 235
Kenneth Keegstra and David Cavalier
8.1 Introduction 235
8.2 Family GT37 enzymes 236
8.2.1 Xyloglucan fucosyltransferase (FUT1) 236
8.2.2 Other FUT genes 240
8.3 Family GT34 enzymes 241
8.3.1 Galactomannan galactosyltransferase 241
8.3.2 Xyloglucan xylosyltransferase 243
8.4 Concluding comments 246
References 247
9 Glycosyltransferases of the GT43 Family 251
Nadine Anders and Paul Dupree
9.1 Introduction 251
9.2 GT43 glycosyltransferases in plants - putative
P-l,4-xylosyltransferases 255
9.3 GT43 glycosyltransferases in animals -
P-l,3-glucuronosyltransferases 256
9.4 Structural characteristics of GT43 proteins 257
9.5 Concluding remarks 259
References 260
10 Glycosyltransferases of the GT47 Family 265
Naomi Geshi, Jesper Harholt, Yumiko Sakuragi,
Jacob Krtiger Jensen and Henrik Vibe Scheller
10.1 Introduction 266
10.2 Phylogenetic analysis of CAZy GT47 266
10.3 Group A 269
10.4 Group D 272
10.5 Group B 275
10.6 Group C 277
10.7 Subcellular localization and
protein-protein interactions 278
10.8 Conclusion 280
References 280
Contents ¦ XV
11 The Plant Glycosyltransferase Family GT64: in Search of
a Function 285
Ellinor Edvardsson, Sunil Kumar Singh, Min-Soo Yun,
Agata Mansfeld, Marie-Theres Hauser and Alan Marchant
11.1 Introduction 286
11.2 GT64 family members are found in a diverse range of
species 286
11.3 The Arabidopsis GT64 family 287
11.3.1 Structure of the GT64 genes and proteins 287
11.3.2 Function of Arabidopsis GT64s proteins 290
11.3.2.1 At3g55830 EPC1 290
11.3.2.2 Atlg80290 EPC-L1 295
11.3.2.3 At5g04500 EPC-L2 295
11.4 Possible activities of the plant GT64 enzymes 296
11.4.1 Could EPC1 function in AGP synthesis? 297
11.4.2 Could EPC1 play a role in FLA biosynthesis? 298
11.4.3 EPC1 as a negative regulator of ABA signalling 298
11.5 Concluding remarks 299
References 299
12 Glycosyltransferases of the GT77 Family 305
Bent Larsen Petersen, Kirsten Faber and Peter Ulvskov
12.1 Introduction 305
12.2 The oldest cell wall 306
12.3 Pfam and fold prediction 307
12.4 Establishing GT77 311
12.4.1 The Dictyostelium discoideum
(l,3)-a-D-galactosyltranferase 312
12.4.2 Clade B - rhamnogalacturonan-II biosynthesis 312
12.4.3 Clade A - the mixed algal and higher plant clade 315
12.4.4 Clade C and PfamB 13934 317
12.4.5 Clade D 317
12.4.6 Clade E - the youngest clade 317
12.5 Discussion 318
Acknowledgments 318
References 319
13 Hydroxyproline-rich Glycoproteins: Form and Function 321
Marcia J. Kieliszewski, Derek T.A. Lamport, Li Tan
and Maura C. Cannon
13.1 Introduction 322
13.1.1 Background 322
13.1.2 Definitions 322
13.2 Post-translational modifications 323
13.2.1 Rules for proline hydroxylation 323
xvi ¦ Contents
13.2.2 O-Hyp-glycosylation codes - the Hyp contiguity
hypothesis 324
13.2.3 Glycosylation enhances secretion of designer
glycoproteins 327
13.2.4 Glycosylation anomalies 328
13.2.5 Crosslinking code involving tyrosine motifs 329
13.3 Molecular function, biological role 329
13.3.1 Arabinogalactan proteins (AGPs) 329
13.3.2 Extensins as self-assembling amphiphiles 330
13.3.3 Role of multiple extensins 332
13.4 Evolution 334
13.4.1 Conserved motifs 334
13.4.2 Evolution of the cell plate - nascent cell wall 335
13.5 Epilogue 336
Acknowledgments 336
References 336
14 Plant Cell Wall Biology: Polysaccharides in Architectural and
Developmental Contexts 343
Maureen C. McCann and J. Paul Knox
14.1 Introduction 344
14.2 Plant cell wall biology basics 344
14.3 Analytical tools to study cell wall microstructures and the
diversity of cell wall architectures 346
14.3.1 Molecular probes 346
14.3.2 Advances in microscopies 349
14.3.3 Spectroscopic and spectrometric technologies 350
14.4 Cell wall architectures: primary cell walls 350
14.4.1 Modulation of cellulose-hemicellulose networks
and cell enlargement 352
14.4.2 Pectins: modular multifunctional polymers of the
primary cell wall matrix 353
14.5 In vitro polysaccharide composites 355
14.6 Cell wall diversity 355
14.7 Cell wall architectures: secondary cell walls 358
14.8 Prospects for plant cell wall biology 360
Acknowledgements 360
References 360
15 Enzymatic Modification of Plant Cell Wall Polysaccharides 367
Jens 0bro, Takahisa Hayashi and Jtsrn Dalgaard Mikkelsen
15.1 Introduction 368
15.2 In vivo modifications 369
15.3 Post-harvest modifications 376
15.4 Perspectives 380
Contents ¦ xvii
Acknowledgments 381
References 382
16 Production of Heterologous Storage Polysaccharides in Potato
Plants 389
Xing-Feng Huang, Jean-Paul Vincken, Richard G.F. Visser
and Luisa M. Trindade
16.1 Introduction 390
16.2 Starch: native and modified starch, consequences for its
properties 390
16.2.1 Starch biosynthesis in storage organs 391
16.2.2 Alteration of starch composition through the
modeling of plant genes 391
16.2.2.1 Amylose-free starch 391
16.2.2.2 High-amylose starch 393
16.2.3 Modification of starch properties by expression of
bacterial proteins in plants 393
16.3 Production of novel storage polysaccharides in plants 394
16.3.1 Glucans synthesized in transgenic plants 394
16.3.1.1 Alternan 395
16.3.1.2 Dextran 396
16.3.1.3 Mutan 396
16.3.1.4 Other novel carbohydrates 398
16.3.2 Fructans synthesized heterologously in transgenic
potato plants 398
16.3.2.1 Enzymes of fructan biosynthesis 399
16.3.2.2 Industrial applications of fructans 400
16.3.2.3 Fructans in transgenic plants 400
16.4 Final remarks 402
References 403
17 Glycan Engineering in Transgenic Plants 409
Muriel Bardor, Jose A. Cremata and Patrice Lerouge
17.1 Introduction 409
17.2 N-glycosylation: a major post-translational modification of
secreted proteins 410
17.2.1 N-Glycosylation of plant-derived pharmaceuticals:
antibodies as a glycoprotein model 412
17.2.2 Differences in N-glycan structure may
compromise in vivo use of plant-derived
therapeutic proteins 413
17.3 Strategies for glycan engineering in transgenic plants 415
17.3.1 Retention in the ER 415
17.3.2 In planta reconstruction of human-like N-glycarts
by knock-in strategies 415
xviii ¦ Contents
17.3.3 Removal of immunogenic plant epitopes by
knock-out strategies 417
17.3.4 In planta sialylation of recombinant proteins 418
17.4 Conclusions 419
Acknowledgements 420
References 421
18 Polysaccharide Nanobiotechnology: A Case Study of
Dental Implant Coating 425
Marco Morra, Clara Cassinelli, Giovanna Cascardo, Hanna Kokkonen,
Juha Tuukkanen, Claudio Delia Volpe, Stefano Siboni, Giordano Segatta,
Marco Brugnara and Giacomo Ceccone
18.1 Introduction: titanium dental implants and surface
modifications 426
18.2 Rationale for the surface modification of titanium dental
implants by nanolayers of MHRs 428
18.2.1 Background 428
18.2.2 Modification of solid surfaces by MHRs: general
principles 429
18.2.3 Experiments on osteogenic cell adhesion to
MHR-coated surfaces 431
18.2.4 Wettability of MHR-coated surfaces 434
18.3 Surface modification of titanium dental implants by
MHRs 438
18.3.1 Surface modification of titanium by MHR: surface
chemical analysis 438
18.3.2 Surface modification of titanium by MHRs:
wettability measurements on machined and rough
surfaces 443
18.4 Reflections and conclusions 444
Acknowledgments 446
References 446
Index 451
|
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| owner | DE-11 DE-91S DE-BY-TUM DE-29T DE-M49 DE-BY-TUM |
| owner_facet | DE-11 DE-91S DE-BY-TUM DE-29T DE-M49 DE-BY-TUM |
| physical | XXXVII, 464 S. Ill., graph. Darst. |
| publishDate | 2011 |
| publishDateSearch | 2011 |
| publishDateSort | 2011 |
| publisher | Wiley-Blackwell |
| record_format | marc |
| series | Annual plant reviews |
| series2 | Annual plant reviews |
| spelling | Plant polysaccharides, biosynthesis and bioengineering ed. by Peter Ulvskov 1. publ. Chichester Wiley-Blackwell 2011 XXXVII, 464 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Annual plant reviews 41 Includes bibliographical references and index Polysaccharides Botanical chemistry Ulvskov, Peter Sonstige oth Annual plant reviews 41 (DE-604)BV012859776 41 HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=021128928&sequence=000004&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Plant polysaccharides, biosynthesis and bioengineering Annual plant reviews Polysaccharides Botanical chemistry |
| title | Plant polysaccharides, biosynthesis and bioengineering |
| title_auth | Plant polysaccharides, biosynthesis and bioengineering |
| title_exact_search | Plant polysaccharides, biosynthesis and bioengineering |
| title_full | Plant polysaccharides, biosynthesis and bioengineering ed. by Peter Ulvskov |
| title_fullStr | Plant polysaccharides, biosynthesis and bioengineering ed. by Peter Ulvskov |
| title_full_unstemmed | Plant polysaccharides, biosynthesis and bioengineering ed. by Peter Ulvskov |
| title_short | Plant polysaccharides, biosynthesis and bioengineering |
| title_sort | plant polysaccharides biosynthesis and bioengineering |
| topic | Polysaccharides Botanical chemistry |
| topic_facet | Polysaccharides Botanical chemistry |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=021128928&sequence=000004&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV012859776 |
| work_keys_str_mv | AT ulvskovpeter plantpolysaccharidesbiosynthesisandbioengineering |