Bioinformatics: high performance parallel computer architectures
Saved in:
| Format: | Book |
|---|---|
| Language: | English |
| Published: |
Boca Raton, Fla. [u.a.]
CRC Press
2011
|
| Series: | Embedded multi-core systems
|
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Item Description: | Includes bibliographical references and index |
| Physical Description: | XIV, 356 S. Ill., graph. Darst. |
| ISBN: | 9781439814888 |
Staff View
MARC
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Record in the Search Index
| _version_ | 1804143757712424960 |
|---|---|
| adam_text | Contents
Preface
...........:........................................................................................................
vii
Editor
........................................................................................................................xi
Contributors
.........................................................................................................xiii
1
Algorithms for Bioinformatics
....................................................................1
Bertil
Schmidt
2
Introduction to GPGPUs and Massively
Threaded Programming
..............................................................................29
Robert M.
Färber
3
FPGA: Architecture and Programming
...................................................49
Douglas Maskell
4
Parallel Algorithms for Alignments on the Cell BE
.............................59
Abhinav
Sarje
and Srinivas Alum
5
Orchestrating the Phylogenetic Likelihood Function on
Emerging Parallel Architectures
...............................................................85
Alexandros Stamatakis
6
Parallel Bioinformatics Algorithms for
CUDA-Enabled GPUs
................................................................................117
Yongchao Liu,
Bertil
Schmidt, and Douglas Maskell
7
CUDA
Error Correction Method for High-Throughput Short-
Read Sequencing Data
...............................................................................139
Haixiang Shi, Weiguo Liu, and
Bertil
Schmidt
8
FPGA Acceleration of Seeded Similarity Searching
..........................157
Arpith C. Jacob, Joseph M. Lancaster, Jeremy D. Buhler, and
Roger D. Chamberlain
9
Seed-Based Parallel Protein Sequence Comparison
Combining Multithreading, GPU, and FPGA Technologies
............181
Dominique Lavenier and Van-Hoa Nguyen
10
Database Searching with Profile-Hidden Markov Models on
Reconfigurable
and Many-Core Architectures
....................................203
John Paul Walters, Vipin Chaudhary, and
Bertil
Schmidt
vi
Contents
11
COPACOBANA: A
Massively Parallel FPGA-Based
Computer
Architecture
.............................................................................223
Manfred Schimmler, Lars Wienbrandt, Tim Güneysu, and Jost Bissei
12
Accelerating String Set Matching for Bioinformatics
Using FPGA Hardware
.............................................................................263
Yoginder S. Dandass
13
Reconfigurable
Neural System and Its Application to
Dimeric Protein Binding Site Identification
........................................285
Feng Lin and
Maria Stepanova
14
Parallel FPGA Search Engine for Protein Identification
...................313
Daniel Coca,
István
Bogdan,
and Robert
ƒ.
Beynon
Index
.....................................................................................................................337
|
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| id | DE-604.BV037157056 |
| illustrated | Illustrated |
| indexdate | 2024-07-09T22:52:44Z |
| institution | BVB |
| isbn | 9781439814888 |
| language | English |
| lccn | 2010003953 |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-021071720 |
| oclc_num | 699736524 |
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| physical | XIV, 356 S. Ill., graph. Darst. |
| publishDate | 2011 |
| publishDateSearch | 2011 |
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| publisher | CRC Press |
| record_format | marc |
| series2 | Embedded multi-core systems |
| spelling | Bioinformatics high performance parallel computer architectures ed. by Bertil Schmidt Boca Raton, Fla. [u.a.] CRC Press 2011 XIV, 356 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Embedded multi-core systems Includes bibliographical references and index Datenverarbeitung Bioinformatics Data processing Parallel processing (Electronic computers) Bioinformatik (DE-588)4611085-9 gnd rswk-swf Bioinformatik (DE-588)4611085-9 s DE-604 Schmidt, Bertil 1971- Sonstige (DE-588)143322893 oth Digitalisierung UB Regensburg application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=021071720&sequence=000004&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Bioinformatics high performance parallel computer architectures Datenverarbeitung Bioinformatics Data processing Parallel processing (Electronic computers) Bioinformatik (DE-588)4611085-9 gnd |
| subject_GND | (DE-588)4611085-9 |
| title | Bioinformatics high performance parallel computer architectures |
| title_auth | Bioinformatics high performance parallel computer architectures |
| title_exact_search | Bioinformatics high performance parallel computer architectures |
| title_full | Bioinformatics high performance parallel computer architectures ed. by Bertil Schmidt |
| title_fullStr | Bioinformatics high performance parallel computer architectures ed. by Bertil Schmidt |
| title_full_unstemmed | Bioinformatics high performance parallel computer architectures ed. by Bertil Schmidt |
| title_short | Bioinformatics |
| title_sort | bioinformatics high performance parallel computer architectures |
| title_sub | high performance parallel computer architectures |
| topic | Datenverarbeitung Bioinformatics Data processing Parallel processing (Electronic computers) Bioinformatik (DE-588)4611085-9 gnd |
| topic_facet | Datenverarbeitung Bioinformatics Data processing Parallel processing (Electronic computers) Bioinformatik |
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