Transposons and the dynamic genome:
Gespeichert in:
| Weitere Verfasser: | |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Berlin [u.a.]
Springer
2009
|
| Schriftenreihe: | Genome dynamics and stability
4 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | Literaturangaben |
| Beschreibung: | XV, 184 S. graph. Darst. |
| ISBN: | 9783642020049 |
Internformat
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Datensatz im Suchindex
| _version_ | 1804143059988905984 |
|---|---|
| adam_text | Titel: Transposons and the dynamic genome
Autor: Lankenau, Dirk-Henner
Jahr: 2009
Contents
Theoretical Approaches to the Dynamics
of Transposable Elements in Genomes, Populations, and Species
Arnaud Le Rouzic, Pierre Capy 1
1 Introduction 1
2 Genome Colonization 2
2.1 Copy Number Dynamics 2
2.2 The Birth of a New TE Invasion 5
3 TE - Genome Coevolution 9
3.1 Towards a Stable Equilibrium? 9
3.2 Life Cycle ofaTE Sequence 12
4 Conclusion 13
References 14
Infra- and Transspecific Clues to Understanding
the Dynamics of Transposable Elements
Cristina Vieira, Marie Fablet, Emmanuelle Lerat 21
1 Introduction 21
2 Lessons from the Past 23
2.1 The Heritage of Hybrid Dysgenesis Studies
in Drosophila Populations 23
2.2 The Sibling Species D. melanogaster and D. simulans 25
2.3 In the Genome Sequencing Era 26
3 Towards an Understanding of TE Regulation.
From Sequence to Epigenetics 27
3.1 Sequence Variability 27
3.2 TE Dynamics at the Epigenetic Level 30
4 Conclusion 35
References 37
Morphological Characters from the Genome:
SINE Insertion Polymorphism and Phylogenies
Agnes Dettai, Jean-Nicolas Volff 45
1 On the Importance of Getting the Phylogeny Right 45
2 SINEs 47
XIV Contents
3 SINE Insertion Polymorphisms
as Characters for Phylogeny 48
3.1 Character Quality vs. Character Quantity 49
3.2 SINE Insertions are Apomorphies 50
3.3 Levels of Application 51
3.4 Assessing Homology and Recognizing Homoplasy 55
4 Methods 59
4.1 Choice of Test Taxon 59
4.2 Isolation of New SINEs 59
4.3 Isolation of New Insertion Loci 61
4.4 Phylogenetic Reconstruction 64
4.5 Additional Information from Insertion Loci 65
4.6 Insertion Polymorphism of Other Mobile Elements
for Phylogenetic Uses 65
5 Conclusion 65
References 66
Genome Defense Against Transposable Elements
and the Origins of Regulatory RNA
I. King Jordan, Wolfgang J. Miller 77
1 The Ascent of Regulatory RNA 77
2 RNAi and Genome Defense 79
3 TEs and microRNAs 81
4 Repeat-Associated Sequences and piRNAs 83
5 Transcript Infection Model 88
References 90
When Drosophila Meets Retrovirology: The gypsy Case
Christophe Terzian, Alain Pelisson, Alain Bucheton 95
1 Introduction 95
2 Historical Background 97
3 Finding the Road to the Germline 98
4 Origin of the gypsy Env 99
5 Structural Analysis of gypsy Env 102
6 Functional Analysis of gypsy Env 103
7 Role of gypsy Env 103
8 Conclusion 104
References 105
Transposon-Host Cell Interactions in the Regulation
of Sleeping Beauty Transposition
Oliver Walisko, Tobias Jursch,
ZSUZSANNA IZSVAK, ZOLTAN IVICS 109
1 Introduction 110
Contents XV
2 The Sleeping Beauty Transposable Element:
Structure and Mechanism of Transposition 110
3 Regulation of Transposition Ill
3.1 Transcriptional Control of Transposition 112
3.2 Control of Synaptic Complex Assembly
During Transposition 115
3.3 Regulation of Transposition by Chromatin 117
3.4 Regulation by Cell-Cycle and DNA Repair Processes 118
3.5 Target Site Selection and Integration 121
4 Concluding Remarks 124
References 124
Interactions of Transposons with the Cellular DNA Repair Machinery
ZSUZSANNA IZSVAK, YONGMING WANG, ZoLTAn IVICS 133
1 Introduction 134
2 The Types of DNA Damage Produced by Transposons .... 134
3 Cellular Processes Potentially Involved in Signaling
and Repairing Transposition Intermediates 135
4 The Main Classes of Transposons 140
4.1 Cut Paste DNA Transposons, V(D)J Recombination 140
4.2 Copy Paste Retroelements 155
5 Repetitive Elements and Genome Stability 161
6 Transposition and Cell Cycle 163
7 Concluding Remarks 165
References 166
Subject Index I77
|
| any_adam_object | 1 |
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| dewey-hundreds | 500 - Natural sciences and mathematics |
| dewey-ones | 572 - Biochemistry |
| dewey-raw | 572.869 |
| dewey-search | 572.869 |
| dewey-sort | 3572.869 |
| dewey-tens | 570 - Biology |
| discipline | Biologie |
| format | Book |
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| institution | BVB |
| isbn | 9783642020049 |
| language | English |
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| physical | XV, 184 S. graph. Darst. |
| publishDate | 2009 |
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| series | Genome dynamics and stability |
| series2 | Genome dynamics and stability |
| spelling | Transposons and the dynamic genome eds.: Dirk-Henner Lankenau ... Berlin [u.a.] Springer 2009 XV, 184 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier Genome dynamics and stability 4 Literaturangaben Transponierbares Element (DE-588)4319836-3 gnd rswk-swf Molekulare Evolution (DE-588)4812902-1 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Molekulare Evolution (DE-588)4812902-1 s Transponierbares Element (DE-588)4319836-3 s DE-604 Lankenau, Dirk-Henner (DE-588)132806282 edt Genome dynamics and stability 4 (DE-604)BV022200036 4 HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=020419042&sequence=000004&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Transposons and the dynamic genome Genome dynamics and stability Transponierbares Element (DE-588)4319836-3 gnd Molekulare Evolution (DE-588)4812902-1 gnd |
| subject_GND | (DE-588)4319836-3 (DE-588)4812902-1 (DE-588)4143413-4 |
| title | Transposons and the dynamic genome |
| title_auth | Transposons and the dynamic genome |
| title_exact_search | Transposons and the dynamic genome |
| title_full | Transposons and the dynamic genome eds.: Dirk-Henner Lankenau ... |
| title_fullStr | Transposons and the dynamic genome eds.: Dirk-Henner Lankenau ... |
| title_full_unstemmed | Transposons and the dynamic genome eds.: Dirk-Henner Lankenau ... |
| title_short | Transposons and the dynamic genome |
| title_sort | transposons and the dynamic genome |
| topic | Transponierbares Element (DE-588)4319836-3 gnd Molekulare Evolution (DE-588)4812902-1 gnd |
| topic_facet | Transponierbares Element Molekulare Evolution Aufsatzsammlung |
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