Bioinformatics: tools and applications
Saved in:
| Other Authors: | |
|---|---|
| Format: | Book |
| Language: | English |
| Published: |
New York [u.a.]
Springer
2009
|
| Subjects: | |
| Online Access: | Inhaltsverzeichnis Klappentext |
| Physical Description: | XII, 451 S. Ill., graph. Darst. |
| ISBN: | 9780387927374 |
Staff View
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Record in the Search Index
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| adam_text | Contents 1 DNA Sequence Databases............ ................................................................ 1 David Edwards, David Hansen, and Jason E. Stajich 2 Sequence Comparison Tools....................................................................... 13 Michael Imelfort 3 Genome Browsers.......... ............................................................................... 39 Sheldon McKay and Scott Cain 4 Predicting Non-coding RNA Transcripts.................... 65 Laura A. Kavanaugh and Uwe Ohler 5 Gene Prediction Methods............................................................................ 99 William H. Majoros, Ian Korf, and Uwe Ohler 6 Gene Annotation Methods.......................................................................... 121 Laurens Wilming and Jennifer Harrow 7 Regulatory Motif Analysis.......................................................................... 137 Alan Moses and Saurabh Sinha 8 Molecular Marker Discovery and Genetic Map Visualisation........... 165 Chris Duran, David Edwards, and Jacqueline Batley 9 Sequence Based Gene Expression Analysis............................................. 191 Lakshmi K. Matukumalli and Steven G. Schroeder 10 Protein Sequence Databases........................................................................ 209 Terry Clark vii
viii Contents 11 Protein Structure Prediction.................................................................... Sitao Wu and Yang Zhang 225 12 Classification of Information About Proteins........................................ Amandeep S. Sidhu, Matthew I. Bellgard, and Tharam S. Dillon 243 13 High-Throughput Plant Phenotyping - Data Acquisition, Transformation, and Analysis.......................................................... Matthias Eberius and José Lima-Guerra 259 14 Phenome Analysis of Microorganisms....................................................... 279 Christopher M. Gowen and Stephen S. Fong 15 Standards for Functional Genomics.... ................................................... Stephen A. Chervitz, Helen Parkinson, Jennifer M. Fostel, Helen C. Causton, Susanna-Assunta Sanson, Eric W. Deutsch, Dawn Field, Chris F. Taylor, Philippe Rocca-Serra, Joe White, and Christian J. Stoeckert 293 16 Literature Databases.................................................................................. J. Lynn Fink 331 17 Advanced Literature-Mining Tools......................................................... Pierre Zweigenbaum and Dina Demner-Fushman 347 18 Data and Databases.................................................................................... Daniel Damian 381 19 Programming Languages......................................................................... John Boyle 403 Index..................................................................................................................... 441
Bioinformatics Toolsand Applications David Edwards • Jason Stajich • David Hansen ..... • :■■ ■ . n -SI il :i-i.end.Ho’v t/lasdesaoduaotapart to the H.iuN il лилиано m ’.”• • .................. ala ii i к at ,. - !.■ . ! !.■ ■ p. . to phe:b.i res Г *1ор нм мч Much hi ll •. tx... si 1CP.I anadinn onanat pur ds’h. ни i;b •■ con. . boles ai data to hypotheses. ■и ;ч .I...... . i; . . , .!/ ■ - panic s l.l !.. dak рнн схапо асач .’.ppi., d I’ioihHi. mail, - 11 ■ 1, 11._ .inal.. - of ^■■piL m, Heratie and tanctional data tn the пик поп *! 1 .Л I mon о: ч ^..нн.ц’к I и»- abiiiu tu pinn, and miel pi. t large olames ■ ■) data I» essential Л.’.!: 1!:. arei I. it Illi I 1.1 Hl-ч lapin tttongihput I .c.]itci,v. I . Pro. idilig an on 1 load ol equince d it.I 1141 i.ii bapters pros de .ni in! zod: ‘... m tn ilie anal -is ni DX) and protein equenc s. J nun I.и.! dolsston lu Puin pr.dicter a ,d anotanop, vith pectl chapter- ur. I and protein da ibas. ,ь Mill нсллымын id Ju topgi chapter ин in .in gine expression analvsi- hum :I- .’i . . .11 . ! 11 aci и a1 lii ii i .n I in and и nue inenl sn|i eihi has d approaches, iollowed In ,ii, ’Hi I idiii.in.il !.. till- ! icii и.s; field . t phenoms, iiltli Peril chapters defailing advances in plan и d ini, и Bual on no-o. ..ii. I.si- and ., chapt r dealing n,th tin important issue of lotiard- 1. I l.. ...... . .’.I ■ !. . s 11,:! I Hi chapl Is mewnt the Jieaol iteratun databases and ass uin • i -, .-. . i i.. ■ г11111 0 h , Pi ini! , icreasingl i wential Io mspret thi i.1st volume o! ; col di,.I ..in. . ,
iiiloi MIation wiale the final chapter- pres nt Omniormatus purely lion : il.-il.»,ii po . I ■! ши destthgnig i’ll vantom data and databases a. well as mmimni ; :o..’,.p npa , и .■ ■... -, . .’-id lu: boaopalas application- Hu si к hapter pun ide an mtridas ■ -i . n ■ ■ i a1 on ’.• .; ■; ..
Aalikslot in plen ntation logclher this lolume aims to рчч n:. .■ ,. ....... ■...}•... . dost, лапнраяеш under- latidih g o the undtoachine aie. o: i.-..’..I.. ., ,• . ... ..на .201 sel .i ist. who are interested learning mon about the I .id o’ . o!..e ■■■■ , • ■•■ David Ldwards gamed an Honours
degrecli agraai’tar о......... I ............ .... : ■ ■ !W4 and .1 I’liD trom the Department ol Plaint Хч-;.... । as: .m . .■.. .. Is ......... ic has held positions within aiademia :l inns. . ,.- wsloa i. i.e ...* ,. ( ■■ ■ । d . I K. and , kl ill! University, Canada zerr........ !.. . — ■ ......
..i . ! ;. I .;•..,; •■._ ot Pvimar Industries. Victoria Vuslzali. .nd ;..,;•..и. I; ■ . .• i . : ....• • ........ P’vinciple Research Fellow al tin I tine •.”. ..i ( •■.. -s me ..:..:.. id »1 [is, sat .,■ . . group within the Atlstiah.il’l e:in. lol ■ . I || i : 1- 11........ s |.О’--Ч ■
, .--.: ч.а .■ ■ - ■ mJ applied agi icultin al bioledinoios :′ .;■ i. :.,ie I рч -■■. ...;■.• , o-.; ., s 11 . ......... application of mole ul. и .s in I., m2: :. :- . ■ .;.; . a ■■■ ■..-.. ”.■.■..■.• .. ■ . i .... : i. ■ ажаНапвепанаВашегоааепешивевымоттеметимойоеепапаВиябалени and a I iiD m
ta:: i:. ai im..... u. . :■ X, ■ . ■ . : •: • . • i: . ... (ооатетентапппяеоьсевачара
ЕщтореарВишопшацсьюышесатдатеи David led the research and development ol the SRS genomic data and loo! integration software at I IO bioscience in Cambridge from 1998 to 2D0I. David is now a Principal Reseatch Scientist a! the CSIR( ) Australian P. I lealth Research ( entre and leads many гоапЬ projects in c-Health aimed at improving the collection and use of information relevant to patient health. These research protects aie in the areas of health data integration anil chiical termologics, bromedical imaging and i emote 1М1В1И||||||ИИИ1|И||1в111|||11111||1И Jason Stajich earned a Bachelor ot Sulence in ( computer Science from i Juki Cniversiti in Durham. XC in 1994 and worked as a programmer lor the enter tor I Iuman n netics at I )i ike l ni ersit Mvdii.il l enter for two years assisting in building a stem- supporting human disease gene mapping research He completed a Ph!) in Genets and Genomics trom Duke U’nversity ni 200ь followed bi postdoctoral training at the University ot California, Berkele on fellowship from the Miller Inst it utctor Basis Research mSiikHie. Jason iscurrentiv an Assistant Professor ol Bointormatts in the Department ol Plant Pathology and Microbiology al the I mversity of altorma. Riverside, lason’s research focuses on the evolution of Itngi studvinp i hange at gene and genome wale among populations and «иго the kingdom employing computational ап.] compatatise approaches. Hi i interested in the emergence and olution o! pathogens and evolution ol development and forms in multicellular tungi.
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| spelling | Bioinformatics tools and applications David Edwards ... (eds.) New York [u.a.] Springer 2009 XII, 451 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Bioinformatics Computational Biology methods Databases, Genetic Medical Informatics Sequence Analysis, DNA Bioinformatik (DE-588)4611085-9 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Bioinformatik (DE-588)4611085-9 s DE-604 Edwards, David edt Digitalisierung UB Regensburg - ADAM Catalogue Enrichment application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=018682275&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis Digitalisierung UB Regensburg - ADAM Catalogue Enrichment application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=018682275&sequence=000003&line_number=0002&func_code=DB_RECORDS&service_type=MEDIA Klappentext |
| spellingShingle | Bioinformatics tools and applications Bioinformatics Computational Biology methods Databases, Genetic Medical Informatics Sequence Analysis, DNA Bioinformatik (DE-588)4611085-9 gnd |
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| title | Bioinformatics tools and applications |
| title_auth | Bioinformatics tools and applications |
| title_exact_search | Bioinformatics tools and applications |
| title_full | Bioinformatics tools and applications David Edwards ... (eds.) |
| title_fullStr | Bioinformatics tools and applications David Edwards ... (eds.) |
| title_full_unstemmed | Bioinformatics tools and applications David Edwards ... (eds.) |
| title_short | Bioinformatics |
| title_sort | bioinformatics tools and applications |
| title_sub | tools and applications |
| topic | Bioinformatics Computational Biology methods Databases, Genetic Medical Informatics Sequence Analysis, DNA Bioinformatik (DE-588)4611085-9 gnd |
| topic_facet | Bioinformatics Computational Biology methods Databases, Genetic Medical Informatics Sequence Analysis, DNA Bioinformatik Aufsatzsammlung |
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