A primer of ecology with R:
Saved in:
| Main Author: | |
|---|---|
| Format: | Book |
| Language: | English |
| Published: |
Dordrecht [u.a.]
Springer
2009
|
| Series: | Use R!
|
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Physical Description: | XVI, 401 S. graph. Darst. |
| ISBN: | 9780387898810 9780387898827 |
Staff View
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Record in the Search Index
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| adam_text |
M. HENRY H. STEVENS A PRIMER OF ECOLOGY WITH R TYJ. SPRINGER CONTENTS
PART I SINGLE SPECIES POPULATIONS SIMPLE DENSITY-INDEPENDENT GROWTH 3
1.1 A VERY SPECIFIC DEFINITION 4 1.2 A SIMPLE EXAMPLE 5 1.3 EXPLORING
POPULATION GROWTH 5 1.3.1 PROJECTING POPULATION INTO THE FUTURE 7 1.3.2
EFFECTS OF INITIAL POPULATION SIZE 8 1.3.3 EFFECTS OF DIFFERENT PER
CAPITA GROWTH RATES 10 1.3.4 AVERAGE GROWTH RATE 10 1.4 CONTINUOUS
EXPONENTIAL GROWTH , . . . . 13 1.4.1 MOTIVATING CONTINUOUS EXPONENTIAL
GROWTH 14 1.4.2 DERIVING THE TIME DERIVATIVE 16 1.4.3 DOUBLING (AND
TRIPLING) TIME 17 1.4.4 RELATING A AND R 18 1.5 COMMENTS ON SIMPLE
DENSITY-INDEPENDENT GROWTH MODELS . 19 1.6 MODELING WITH DATA:
SIMULATED DYNAMICS 20 1.6.1 DATA-BASED APPROACHES 21 1.6.2 LOOKING AT
AND COLLECTING THE DATA 21 1.6.3 ONE SIMULATION 23 1.6.4 MULTIPLE
SIMULATIONS 24 1.6.5 MANY SIMULATIONS, WITH A FUNCTION 26 1.6.6
ANALYZING RESULTS 27 1.7 SUMMARY 31 PROBLEMS 31 DENSITY-INDEPENDENT
DEMOGRAPHY 33 2.1 A HYPOTHETICAL EXAMPLE 34 2.1.1 THE POPULATION
PROJECTION MATRIX 36 2.1.2 A BRIEF PRIMER ON MATRICES 36 2.1.3
POPULATION PROJECTION 37 2.1.4 POPULATION GROWTH 39 XII CONTENTS 2.2
ANALYZING THE PROJECTION MATRIX 40 2.2.1 EIGENANALYSIS 41 2.2.2 FINITE
RATE OF INCREASE - A 42 2.2.3 STABLE STAGE DISTRIBUTION 44 2.2.4
REPRODUCTIVE VALUE 45 2.2.5 SENSITIVITY AND ELASTICITY 46 2.2.6 MORE
DEMOGRAPHIC MODEL DETAILS 48 2.3 CONFRONTING DEMOGRAPHIC MODELS WITH
DATA 49 2.3.1 AN EXAMPLE: CHAMAEDOREA PALM DEMOGRAPHY 49 2.3.2 STRATEGY
50 2.3.3 PRELIMINARY DATA MANAGEMENT 51 2.3.4 ESTIMATING PROJECTION
MATRIX 52 2.3.5 EIGENANALYSES 54 2.3.6 BOOTSTRAPPING A DEMOGRAPHIC
MATRIX 55 2.3.7 THE DEMOGRAPHIC ANALYSIS 56 2.4 SUMMARY 59 PROBLEMS 59 3
DENSITY-DEPENDENT GROWTH 61 3.1 DISCRETE DENSITY-DEPENDENT GROWTH 62
3.1.1 MOTIVATION 62 3.1.2 RELATIONS BETWEEN GROWTH RATES AND DENSITY 64
3.1.3 EFFECT OF INITIAL POPULATION SIZE ON GROWTH DYNAMICS 66 3.1.4
EFFECTS OF RE 68 3.1.5 EFFECTS OF /V 69 3.2 CONTINUOUS DENSITY DEPENDENT
GROWTH .* 75 3.2.1 GENERALIZING AND RESIMPLIFYING THE LOGISTIC MODEL 76
3.2.2 EQUILIBRIA OF THE CONTINUOUS LOGISTIC GROWTH MODEL 79 3.2.3
DYNAMICS AROUND THE EQUILIBRIA * STABILITY 79 3.2.4 DYNAMICS 85 3.3
OTHER FORMS OF DENSITY-DEPENDENCE 86 3.4 MAXIMUM SUSTAINED YIELD 89 3.5
FITTING MODELS TO DATA 92 3.5.1 THE ROLE OF RESOURCES IN ALTERING
POPULATION INTERACTIONS WITHIN A SIMPLE FOOD WEB 92 3.5.2 INITIAL DATA
EXPLORATION 93 3.5.3 A TIME-IMPLICIT APPROACH 95 3.5.4 A TIME-EXPLICIT
APPROACH 101 3.6 SUMMARY 107 PROBLEMS 107 4 POPULATIONS IN SPACE ILL 4.1
SOURCE-SINK DYNAMICS 112 4.2 TWO TYPES OF METAPOPULATIONS 114 4.3
RELATED MODELS 117 4.3.1 THE CLASSIC LEVINS MODEL 117 4.3.2 PROPAGULE
RAIN 118 CONTENTS XIII 4.3.3 THE RESCUE EFFECT AND THE CORE-SATELLITE
MODEL 120 4.4 PARALLELS WITH LOGISTIC GROWTH 123 4.5 HABITAT DESTRUCTION
125 4.6 CORE-SATELLITE SIMULATIONS 128 4.7 SUMMARY 132 PROBLEMS 132 PART
II TWO-SPECIES INTERACTIONS 5 LOTKA*VOLTERRA INTERSPECIFIC COMPETITION
135 5.1 DISCRETE AND CONTINUOUS TIME MODELS 136 5.1.1 DISCRETE TIME
MODEL 136 5.1.2 EFFECTS OF RE 137 5.1.3 CONTINUOUS TIME MODEL 139 5.2
EQUILBRIA 140 5.2.1 ISOCLINES 141 5.2.2 FINDING EQUILIBRIA 143 5.3
DYNAMICS AT THE EQUILIBRIA 146 5.3.1 DETERMINE THE EQUILIBRIA 146 5.3.2
CREATE THE JACOBIAN MATRIX 148 5.3.3 SOLVE THE JACOBIAN AT AN
EQUILIBRIUM 149 5.3.4 USE THE JACOBIAN MATRIX 150 5.3.5 THREE
INTERESTING EQUILBRIA 151 5.4 RETURN TIME AND THE EFFECT OF R 155 5.5
SUMMARY .'. 157 PROBLEMS 158 6 ENEMY*VICTIM INTERACTIONS 161 6.1
PREDATORS AND PREY 162 6.1.1 LOTKA-VOLTERRA MODEL 162 6.1.2 STABILITY
ANALYSIS FOR LOTKA-VOLTERRA 168 6.1.3 ROSENZWEIG-MACARTHUR MODEL 171
6.1.4 THE PARADOX OF ENRICHMENT 177 6.2 SPACE, HOSTS, AND PARASITOIDS
179 6.2.1 INDEPENDENT AND RANDOM ATTACKS 180 6.2.2 AGGREGATION LEADS TO
COEXISTENCE 185 6.2.3 STABILITY OF HOST-PARASITOID DYNAMICS 188 6.3
DISEASE 192 6.3.1 SIR WITH FREQUENCY-DEPENDENT TRANSMISSION 195 6.3.2
SIR WITH POPULATION DYNAMICS 200 6.3.3 MODELING DATA FROM BOMBAY 202 6.4
SUMMARY 206 PROBLEMS 207 XIV CONTENTS PART III SPECIAL TOPICS 7 AN
INTRODUCTION TO FOOD WEBS 211 7.1 FOOD WEB CHARACTERISTICS 211 7.2 FOOD
CHAIN LENGTH * AN EMERGENT PROPERTY 214 7.2.1 MULTI-SPECIES
LOTKA-VOLTERRA NOTATION 214 7.2.2 BACKGROUND 214 7.3 IMPLEMENTING PIMM
AND LAWTON'S METHODS 217 7.4 SHORTENING THE CHAIN 221 7.5 ADDING
OMNIVORY 222 7.5.1 COMPARING CHAIN A VERSUS B 223 7.6 RE-EVALUATING
TAKE-HOME MESSAGES 225 7.7 SUMMARY 226 PROBLEMS 226 8 MULTIPLE BASINS OF
ATTRACTION 227 8.1 INTRODUCTION 227 8.1.1 ALTERNATE STABLE STATES 227
8.1.2 MULTIPLE BASINS OF ATTRACTION 228 8.2 LOTKA-VOLTERRA COMPETITION
AND MBA 230 8.2.1 WORKING THROUGH LOTKA-VOLTERRA MBA 232 8.3 RESOURCE
COMPETITION AND MBA 234 8.3.1 WORKING THROUGH RESOURCE COMPETITION 237
8.4 INTRAGUILD PREDATION 242 8.4.1 THE SIMPLEST LOTKA-VOLTERRA MODEL OF
IGP '. 243 8.4.2 LOTKA-VOLTERRA MODEL OF IGP WITH RESOURCE COMPETITION .
243 8.4.3 WORKING THROUGH AN EXAMPLE OF INTRAGUILD PREDATION . 245
8.4.4 EFFECTS OF RELATIVE ABUNDANCE 247 8.4.5 EFFECTS OF ABSOLUTE
ABUNDANCE 248 8.4.6 EXPLANATION 249 8.5 SUMMARY 252 PROBLEMS 252 9
COMPETITION, COLONIZATION, AND TEMPORAL NICHE PARTITIONING 255 9.1
COMPETITION-COLONIZATION TRADEOFF 255 9.2 ADDING REALITY: FINITE RATES
OF COMPETITIVE EXCLUSION 266 9.3 STORAGE EFFECT 275 9.3.1 BUILDING A
SIMULATION OF THE STORAGE EFFECT 276 9.4 SUMMARY 282 PROBLEMS 283 10
COMMUNITY COMPOSITION AND DIVERSITY 285 10.1 SPECIES COMPOSITION 286
10.1.1 MEASURES OF ABUNDANCE 286 10.1.2 DISTANCE 287 10.1.3 SIMILARITY
290 CONTENTS XV 10.2 DIVERSITY 291 10.2.1 MEASUREMENTS OF VARIETY 292
10.2.2 RAREFACTION AND TOTAL SPECIES RICHNESS 297 10.3 DISTRIBUTIONS 299
10.3.1 LOG-NORMAL DISTRIBUTION 300 10.3.2 OTHER DISTRIBUTIONS 301 10.3.3
PATTERN VS. PROCESS 305 10.4 NEUTRAL THEORY OF BIODIVERSITY AND
BIOGEOGRAPHY 306 10.4.1 DIFFERENT FLAVORS OF NEUTRAL COMMUNITIES 310
10.4.2 INVESTIGATING NEUTRAL COMMUNITIES 312 10.4.3 SYMMETRY AND THE
RARE SPECIES ADVANTAGE 317 10.5 DIVERSITY PARTITIONING 318 10.5.1 AN
EXAMPLE OF DIVERSITY PARTITIONING 321 10.5.2 SPECIES-AREA RELATIONS 323
10.5.3 PARTITIONING SPECIES-AREA RELATIONS 330 10.6 SUMMARY 332 PROBLEMS
332 A A BRIEF INTRODUCTION TO R 335 A.I STRENGTHS OF R/S 335 A.2 THE R
GRAPHICAL USER INTERFACE (GUI) 336 A.3 WHERE IS R? 338 A.4 STARTING AT
THE VERY BEGINNING 338 B PROGRAMMING IN R 341 B.I HELP *. . 341 B.2
ASSIGNMENT 342 B.3 DATA STRUCTURES 343 B.3.1 VECTORS 343 B.3.2 GETTING
INFORMATION ABOUT VECTORS 344 B.3.3 EXTRACTION AND MISSING VALUES 347
B.3.4 MATRICES 348 B.3.5 DATA FRAMES 352 B.3.6 LISTS 354 B.3.7 DATA
FRAMES ARE ALSO LISTS 355 B.4 FUNCTIONS 356 B.4.1 WRITING YOUR OWN
FUNCTIONS 357 B.5 SORTING 358 B.6 ITERATED ACTIONS: THE APPLY FAMILY AND
LOOPS 359 B.6.1 ITERATIONS OF INDEPENDENT ACTIONS 359 B.6.2 DEPENDENT
ITERATIONS 360 B.7 REARRANGING AND AGGREGATING DATA FRAMES 361 B.7.1
REARRANGING OR RESHAPING DATA 361 B.7.2 SUMMARIZING BY GROUPS 362 B.8
GETTING DATA OUT OF AND INTO THE WORKSPACE 363 B.9 PROBABILITY
DISTRIBUTIONS AND RANDOMIZATION 364 B.10 NUMERICAL INTEGRATION OF
ORDINARY DIFFERENTIAL EQUATIONS 366 XVI CONTENTS B.LL NUMERICAL
OPTIMIZATION 369 B.12 DERIVATIVES 373 B.13 GRAPHICS 374 B.13.1 PLOT 374
B.13.2 ADDING POINTS, LINES AND TEXT TO A PLOT 374 B.13.3 MORE THAN ONE
RESPONSE VARIABLE 375 B.13.4 CONTROLLING GRAPHICS DEVICES 377 B.13.5
CREATING A GRAPHICS FILE 378 B.14 GRAPHICAL DISPLAYS THAT SHOW
DISTRIBUTIONS 378 B.15 EIGENANALYSIS 380 B.16 EIGENANALYSIS OF
DEMOGRAPHIC VERSUS JACOBIAN MATRICES 380 B.17 SYMBOLS USED IN THIS BOOK
382 REFERENCES 385 INDEX 397 |
| any_adam_object | 1 |
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| dewey-ones | 577 - Ecology |
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| dewey-search | 577.02855133 |
| dewey-sort | 3577.02855133 |
| dewey-tens | 570 - Biology |
| discipline | Biologie Informatik Umwelt |
| format | Book |
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| indexdate | 2024-12-06T09:03:55Z |
| institution | BVB |
| isbn | 9780387898810 9780387898827 |
| language | English |
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| owner_facet | DE-703 DE-M49 DE-BY-TUM DE-20 DE-188 |
| physical | XVI, 401 S. graph. Darst. |
| publishDate | 2009 |
| publishDateSearch | 2009 |
| publishDateSort | 2009 |
| publisher | Springer |
| record_format | marc |
| series2 | Use R! |
| spelling | Stevens, Martin Henry H. Verfasser aut A primer of ecology with R M. Henry H. Stevens Dordrecht [u.a.] Springer 2009 XVI, 401 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier Use R! R (Langage de programmation) Écologie - Informatique Ökologie (DE-588)4043207-5 gnd rswk-swf R Programm (DE-588)4705956-4 gnd rswk-swf Statistisches Modell (DE-588)4121722-6 gnd rswk-swf Ökologie (DE-588)4043207-5 s Statistisches Modell (DE-588)4121722-6 s R Programm (DE-588)4705956-4 s DE-604 HEBIS Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=018616172&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Stevens, Martin Henry H. A primer of ecology with R R (Langage de programmation) Écologie - Informatique Ökologie (DE-588)4043207-5 gnd R Programm (DE-588)4705956-4 gnd Statistisches Modell (DE-588)4121722-6 gnd |
| subject_GND | (DE-588)4043207-5 (DE-588)4705956-4 (DE-588)4121722-6 |
| title | A primer of ecology with R |
| title_auth | A primer of ecology with R |
| title_exact_search | A primer of ecology with R |
| title_full | A primer of ecology with R M. Henry H. Stevens |
| title_fullStr | A primer of ecology with R M. Henry H. Stevens |
| title_full_unstemmed | A primer of ecology with R M. Henry H. Stevens |
| title_short | A primer of ecology with R |
| title_sort | a primer of ecology with r |
| topic | R (Langage de programmation) Écologie - Informatique Ökologie (DE-588)4043207-5 gnd R Programm (DE-588)4705956-4 gnd Statistisches Modell (DE-588)4121722-6 gnd |
| topic_facet | R (Langage de programmation) Écologie - Informatique Ökologie R Programm Statistisches Modell |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=018616172&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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