Algorithms in bioinformatics: 9th international workshop, WABI 2009, Philadelphia, USA, September 12-13, 2009 ; proceedings
Saved in:
| Format: | Conference Proceeding Book |
|---|---|
| Language: | English |
| Published: |
Berlin [u.a.]
Springer
2009
|
| Series: | Lecture notes in computer science
5724 : Lecture notes in bioinformatics |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Physical Description: | XI, 430 S. Ill., graph. Darst. 235 mm x 155 mm |
| ISBN: | 3642042406 9783642042409 |
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Record in the Search Index
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IMAGE 1
TABLE OF CONTENTS
MINIMUM FACTORIZATION AGREEMENT OF SPLICED ESTS 1
PAOLA BONIZZONI. GIANLUCA DELLA VEDOVA, RICCARDO DONDI. YURI PIROLA, AND
RAFFAELLA RIZZI
ANNOTATING FRAGMENTATION PATTERNS 13
SEBASTIAN BOECKER. FLORIAN RASCHE, AND TAMARA STETIGER
BIRXA: FAST RNA-RNA BINDING SITES PREDICTION 25
HAMIDREZA CHITSAZ. ROLF BACKOFEN, AND S. CENK SAHINALP
QUANTIFYING SYSTEMIC EVOLUTIONARY CHANGES BY COLOR CODING
CONFIDENCE-SCORED PPI NETWORKS 37
PHUONG DAO. ALEXANDER SCHCMHUTH. FEREYDOUN HORMOZDIARI, IMAN
HAJIRASOULIHA. S. CENK SAHINALP, AND MARTIN ESTER
P M F A S T R: A N EW A P P R O A CH TO M U L T I P LE R NA S T R U C T
U RE A L I G N M E NT . . . 49
DANIEL DEBLASIO. JOCELYNE BRUAND. AND SHAOJIE ZHANG
ON THE UPPER BOUND OF THE PREDICTION ACCURACY OF RESIDUE CONTACTS IN
PROTEINS WITH CORRELATED MUTATIONS: THE CASE STUDY OF THE SIMILARITY
MATRICES 62
PIETRO DI LENA. PIERO FARISELLI, LUCIANO MARGARA. MARCO VASSURA. AND
RITA CASADIO
CONSTRUCTING MAJORITY-RULE SUPERTREES 73
JIANRONG DONG. DAVID FERNANDEZ-BACA, AND F.R. MCMORRIS
SCJ: A VARIANT OF BREAKPOINT DISTANCE FOR WHICH SORTING. GENOME MEDIAN
AND GENOME HALVING PROBLEMS ARE EASY 85
PEDRO FEIJAEO AND JOAO MEIDANIS
A SIMPLE. PRACTICAL AND COMPLETE O(J^-^)-TIME ALGORITHM FOR RNA FOLDING
USING THE FOUR-RUSSIANS SPEEDUP 97
YELENA FRID AND DAN GUSFIELD
BACK-TRANSLATION FOR DISCOVERING DISTANT PROTEIN HOMOLOGIES 108 MAIIA
GIRDEA. LAURENT NOE. AND GREGORY KUCHEROV
A MARKOV CLASSIFICATION MODEL FOR METABOLIC PATHWAYS 121 TIMOTHY HANCOCK
AND HIROSHI MAMITSUKA
MIMOSA: MIXTURE MODEL OF CO-EXPRESSION TO DETECT MODULATORS OF
REGULATORY INTERACTION 133
MATTHEW HANSEN. LOGAN EVERETT, LARRY SINGH, AND SRIDHAR HANNENHALLI
BIBLIOGRAFISCHE INFORMATIONEN HTTP://D-NB.INFO/995947953
DIGITALISIERT DURCH
IMAGE 2
X TABLE OF CONTENTS
PHYLOGENETIC COMPARATIVE ASSEMBLY 145
PETER HUSEMANN AND JENS STOYE
K-PARTITE RNA SECONDARY STRUCTURES 157
MINGHUI JIANG. PEDRO J. TEJADA, RAMONI 0. LASISI, SHANHONG CHENG, AND D.
SCOTT FECHSER
EFFICIENT ALGORITHMS FOR ANALYZING SEGMENTAL DUPLICATIONS, DELETIONS,
AND INVERSIONS IN GENOMES 169
CRYSTAL L. KAHN, SHAY MOZES, AND BENJAMIN J. RAPHAEL
PREDICTING GENE STRUCTURES FROM MULTIPLE RT-PCR TESTS 181
JAKUB KOVAC. TOMAS VINAR, AND BRONA BREJOVA
A TREE BASED METHOD FOR THE RAPID SCREENING OF CHEMICAL FINGERPRINTS 194
THOMAS G. KRISTENSEN, JESPER NIELSEN, AND CHRISTIAN N.S. PEDERSEN
GENERALIZING THE FOUR GAMETE CONDITION AND SPLITS EQUIVALENCE THEOREM:
PERFECT PHYLOGENY ON THREE STATE CHARACTERS 206
FUMEI LAM, DAN GUSFIELD, AND SRINATH SRIDHAR
DECODING SYNTENY BLOCKS AND LARGE-SCALE DUPLICATIONS IN MAMMALIAN AND
PLANT GENOMES 220
QIAN PENG, MAX A. ALEKSEYEV, GLENN TESLER, AND PAVEL A. PEVZNER
A GENERAL FRAMEWORK FOR LOCAL PAIRWISE ALIGNMENT STATISTICS WITH GAPS
233
PASI RASTAS
MPSCAN: FAST LOCALISATION OF MULTIPLE READS IN GENOMES 246
ERIC RIVALS, LEENA SALMELA, PETTERI KIISKINEN, PETRI KALSI, AND JORMA
TARHIO
FAST PREDICTION OF RNA-RNA INTERACTION 261
RAHELEH SALARI, ROLF BACKOFEN, AND S. CENK SAHINALP
FLEXSNAP: FLEXIBLE NON-SEQUENTIAL PROTEIN STRUCTURE ALIGNMENT 273 SAEED
SALEM, MOHAMMED J. ZAKI, AND CHRIS BYSTROFF
A NON-PARAMETRIC BAYESIAN APPROACH FOR PREDICTING RNA SECONDARY
STRUCTURES 286
KENGO SATO, MICHIAKI HAMADA, TOUTAI MITUYAMA, KIYOSHI ASAI. AND
YASUBURNI SAKAKIBARA
EXACT SCORE DISTRIBUTION COMPUTATION FOR SIMILARITY SEARCHES IN
ONTOLOGIES 298
MARCEL H. SCHULZ. SEBASTIAN KOEHLER, SEBASTIAN BAUER, MARTIN VINGRON. AND
PETER N. ROBINSON
IMAGE 3
TABLE OF CONTENTS XI
LINEAR-TIME PROTEIN 3-D STRUCTURE SEARCHING WITH INSERTIONS AND
DELETIONS 310
TETSUO SHIBUYA, JESPER JANSSON, AND KUNIHIKO SADAKANE
VISUALIZING PHYLOGENETIC TREESPACE USING CARTOGRAPHIC PROJECTIONS 321
KENNETH SUNDBERG. MARK CLEMENT, AND QUINN SNELL
A SIMULATION STUDY COMPARING SUPERTREE AND COMBINED ANALYSIS METHODS
USING SMIDGEN 333
M. SHEL SWENSON, FRANCOIS BARBANCON, C. RANDAL LINDER, AND TANDY WARNOW
ALIGNING BIOMOLECULAR NETWORKS USING MODULAR GRAPH KERNELS 345 FADI
TOWFIC, M. HEATHER WEST GREENLEE, AND VASANT HONAVAR
MADMX: A NOVEL STRATEGY FOR MAXIMAL DENSE MOTIF EXTRACTION 362 ROBERTO
GROSSI. ANDREA PIETRACAPRINA, NADIA PISANTI. GEPPINO PUCCI, ELI UPFAL.
AND FABIO VANDIN
LARGE-SCALE NEIGHBOR-JOINING WITH NINJA 375
TRAVIS J. WHEELER
A UNIFYING VIEW ON APPROXIMATION AND FPT OF AGREEMENT FORESTS (EXTENDED
ABSTRACT) 390
CHRIS WHIDDEN AND NORBERT ZEH
STRUCTURAL ALIGNMENT OF RNA WITH COMPLEX PSEUDOKNOT STRUCTURE 403 THOMAS
K.F. WONG, T.W. LAM, WING-KIN SUNG, AND S.M. YIU
IMPROVING INFERENCE OF TRANSCRIPTIONAL REGULATORY NETWORKS BASED ON
NETWORK EVOLUTIONARY MODELS 415
XIUWEI ZHANG AND BERNARD M.E. MORET
AUTHOR INDEX 429 |
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| discipline | Biologie Informatik |
| format | Conference Proceeding Book |
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| spelling | Algorithms in bioinformatics 9th international workshop, WABI 2009, Philadelphia, USA, September 12-13, 2009 ; proceedings Steven L. Salzberg ... (eds.) Berlin [u.a.] Springer 2009 XI, 430 S. Ill., graph. Darst. 235 mm x 155 mm txt rdacontent n rdamedia nc rdacarrier Lecture notes in computer science 5724 : Lecture notes in bioinformatics Bioinformatik - Algorithmus - Kongress - Philadelphia <Pa.,2009> Algorithmus (DE-588)4001183-5 gnd rswk-swf Bioinformatik (DE-588)4611085-9 gnd rswk-swf (DE-588)1071861417 Konferenzschrift 2009 Philadelphia, Pa. gnd-content Bioinformatik (DE-588)4611085-9 s Algorithmus (DE-588)4001183-5 s DE-604 Salzberg, Steven L. 1960- Sonstige (DE-588)135643783 oth WABI 9 2009 Philadelphia, Pa. Sonstige (DE-588)16021535-3 oth Lecture notes in computer science 5724 : Lecture notes in bioinformatics (DE-604)BV000000607 5724 DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=018001362&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Algorithms in bioinformatics 9th international workshop, WABI 2009, Philadelphia, USA, September 12-13, 2009 ; proceedings Lecture notes in computer science Bioinformatik - Algorithmus - Kongress - Philadelphia <Pa.,2009> Algorithmus (DE-588)4001183-5 gnd Bioinformatik (DE-588)4611085-9 gnd |
| subject_GND | (DE-588)4001183-5 (DE-588)4611085-9 (DE-588)1071861417 |
| title | Algorithms in bioinformatics 9th international workshop, WABI 2009, Philadelphia, USA, September 12-13, 2009 ; proceedings |
| title_auth | Algorithms in bioinformatics 9th international workshop, WABI 2009, Philadelphia, USA, September 12-13, 2009 ; proceedings |
| title_exact_search | Algorithms in bioinformatics 9th international workshop, WABI 2009, Philadelphia, USA, September 12-13, 2009 ; proceedings |
| title_full | Algorithms in bioinformatics 9th international workshop, WABI 2009, Philadelphia, USA, September 12-13, 2009 ; proceedings Steven L. Salzberg ... (eds.) |
| title_fullStr | Algorithms in bioinformatics 9th international workshop, WABI 2009, Philadelphia, USA, September 12-13, 2009 ; proceedings Steven L. Salzberg ... (eds.) |
| title_full_unstemmed | Algorithms in bioinformatics 9th international workshop, WABI 2009, Philadelphia, USA, September 12-13, 2009 ; proceedings Steven L. Salzberg ... (eds.) |
| title_short | Algorithms in bioinformatics |
| title_sort | algorithms in bioinformatics 9th international workshop wabi 2009 philadelphia usa september 12 13 2009 proceedings |
| title_sub | 9th international workshop, WABI 2009, Philadelphia, USA, September 12-13, 2009 ; proceedings |
| topic | Bioinformatik - Algorithmus - Kongress - Philadelphia <Pa.,2009> Algorithmus (DE-588)4001183-5 gnd Bioinformatik (DE-588)4611085-9 gnd |
| topic_facet | Bioinformatik - Algorithmus - Kongress - Philadelphia <Pa.,2009> Algorithmus Bioinformatik Konferenzschrift 2009 Philadelphia, Pa. |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=018001362&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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