Managing molecular taxonomic data:
Biological taxonomy, the description and re-identification of species, is not able to face the current biodiversity crisis adequately: 70-98% of the several million species on our planet are still undescribed, while extinctions take place every minute. In order to overcome the 'taxonomic impedi...
Saved in:
| Format: | Book |
|---|---|
| Language: | English |
| Published: |
Berlin
Inst. für Bibliotheks- und Informationswiss. der Humboldt-Univ.
2009
|
| Series: | Berliner Handreichungen zur Bibliothekswissenschaft
249 |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Summary: | Biological taxonomy, the description and re-identification of species, is not able to face the current biodiversity crisis adequately: 70-98% of the several million species on our planet are still undescribed, while extinctions take place every minute. In order to overcome the 'taxonomic impediment', it has recently been proposed to speed up the identification of known species as well as the process of species discovery by using short genetic signature sequences, so-called 'DNA barcodes'. During the last few years, hundreds of thousands of DNA barcodes have been assembled. However, little emphasis has so far been given to theoretical considerations concerning the management of these data. Here I address questions on how to handle the data needed in molecular taxonomy (e.g. digital preservation, data quality, annotation, database integration). For this purpose, I analyze the NCBI GenBank database and the Barcode of Life Data System (BOLD). |
| Item Description: | Online-Ausg. im Internet. - Literatur- und URL-Verz. S. 55 - 62 |
| Physical Description: | 62 S. Ill., graph. Darst. |
Staff View
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Record in the Search Index
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| adam_text | Table
of
contents
1
INTRODUCTION
.....................................................................................................6
1.1
Taxonomy and the current biodiversity crisis
..............................................................................................6
1.2
The
taxonomic
impediment
............................................................................................................................6
1.3 DNA
taxonomy
/ DNA
barcoding
..................................................................................................................8
1.4
Goals of this study
.........................................................................................................................................10
2
DISCUSSION
........................................................................................................11
2.1
Molecular biology databases; GenBank and BOLD
..................................................................................11
2.2
Data in molecular taxonomy
........................................................................................................................16
2.3
Annotation standards and information retrieval
.......................................................................................25
2.4
Identifiers in
DNA
taxonomy
.......................................................................................................................34
2.5
Quality of the information
............................................................................................................................38
2.6
Preservation of molecular
taxonomic
data
.................................................................................................42
2.7
Data integration
............................................................................................................................................47
3
CONCLUSION
......................................................................................................54
ACKNOWLEDGEMENTS
........................................................................................55
REFERENCES
.........................................................................................................55
APPENDIX: INTERNET RESOURCES
....................................................................61
|
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| language | English |
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| spelling | Managing molecular taxonomic data von Jonas J. Astrin Berlin Inst. für Bibliotheks- und Informationswiss. der Humboldt-Univ. 2009 62 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Berliner Handreichungen zur Bibliothekswissenschaft 249 Online-Ausg. im Internet. - Literatur- und URL-Verz. S. 55 - 62 Biological taxonomy, the description and re-identification of species, is not able to face the current biodiversity crisis adequately: 70-98% of the several million species on our planet are still undescribed, while extinctions take place every minute. In order to overcome the 'taxonomic impediment', it has recently been proposed to speed up the identification of known species as well as the process of species discovery by using short genetic signature sequences, so-called 'DNA barcodes'. During the last few years, hundreds of thousands of DNA barcodes have been assembled. However, little emphasis has so far been given to theoretical considerations concerning the management of these data. Here I address questions on how to handle the data needed in molecular taxonomy (e.g. digital preservation, data quality, annotation, database integration). For this purpose, I analyze the NCBI GenBank database and the Barcode of Life Data System (BOLD). Datenmanagement (DE-588)4213132-7 gnd rswk-swf Informationsmanagement (DE-588)4114012-6 gnd rswk-swf Taxonomie (DE-588)4184546-8 gnd rswk-swf DNA Barcoding (DE-588)7679140-3 gnd rswk-swf (DE-588)4151278-9 Einführung gnd-content DNA Barcoding (DE-588)7679140-3 s Taxonomie (DE-588)4184546-8 s DE-604 Datenmanagement (DE-588)4213132-7 s DE-188 Informationsmanagement (DE-588)4114012-6 s Astrin, Jonas J. Sonstige oth Institut für Bibliotheks- und Informationswissenschaft <Berlin> Berliner Handreichungen zur Bibliotheks- und Informationswissenschaft 249 (DE-604)BV021494918 249 Digitalisierung BSBMuenchen application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=017755647&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Managing molecular taxonomic data Datenmanagement (DE-588)4213132-7 gnd Informationsmanagement (DE-588)4114012-6 gnd Taxonomie (DE-588)4184546-8 gnd DNA Barcoding (DE-588)7679140-3 gnd |
| subject_GND | (DE-588)4213132-7 (DE-588)4114012-6 (DE-588)4184546-8 (DE-588)7679140-3 (DE-588)4151278-9 |
| title | Managing molecular taxonomic data |
| title_auth | Managing molecular taxonomic data |
| title_exact_search | Managing molecular taxonomic data |
| title_full | Managing molecular taxonomic data von Jonas J. Astrin |
| title_fullStr | Managing molecular taxonomic data von Jonas J. Astrin |
| title_full_unstemmed | Managing molecular taxonomic data von Jonas J. Astrin |
| title_short | Managing molecular taxonomic data |
| title_sort | managing molecular taxonomic data |
| topic | Datenmanagement (DE-588)4213132-7 gnd Informationsmanagement (DE-588)4114012-6 gnd Taxonomie (DE-588)4184546-8 gnd DNA Barcoding (DE-588)7679140-3 gnd |
| topic_facet | Datenmanagement Informationsmanagement Taxonomie DNA Barcoding Einführung |
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