Computational systems biology:
Saved in:
| Format: | Book |
|---|---|
| Language: | English |
| Published: |
New York, NY
Humana
2009
|
| Series: | Methods in molecular biology
541 |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Physical Description: | XVIII, 587 S. Ill., graph. Darst. |
| ISBN: | 9781588299055 |
Staff View
MARC
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| 245 | 1 | 0 | |a Computational systems biology |c ed. by Jason McDermott ... |
| 264 | 1 | |a New York, NY |b Humana |c 2009 | |
| 300 | |a XVIII, 587 S. |b Ill., graph. Darst. | ||
| 336 | |b txt |2 rdacontent | ||
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| 338 | |b nc |2 rdacarrier | ||
| 490 | 1 | |a Methods in molecular biology |v 541 | |
| 650 | 4 | |a Datenverarbeitung | |
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| 650 | 4 | |a Computational Biology | |
| 650 | 4 | |a Computational biology | |
| 650 | 4 | |a Genomics | |
| 650 | 4 | |a Molecular biology |x Data processing | |
| 650 | 4 | |a Proteomics | |
| 650 | 4 | |a Systems Biology | |
| 650 | 4 | |a Systems biology | |
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Record in the Search Index
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|---|---|
| adam_text | Contents
Preface
............................................................
v
Contributors
........................................................ xiii
Color Plates
........................................................ xvii
Part I: Network Components
1.
Identification of
cis-
Regulatory Elements in Gene Co-expression Networks
Using A-GLAM
................................................... 3
Leonardo Marino-Ramirez,
Kannan Tharakaraman,
Olivier Bodenreider,
John Spouge, and David Landsman
2.
Structure-Based
Ab Initio
Prediction of Transcription Factor-Binding Sites
..... 23
L. Angela Liu and Joel S.
Bader
3.
Inferring Protein-Protein Interactions from Multiple Protein Domain
Combinations
..................................................... 43
Simon P.
Kanaan,
Chengbang Huang, Stefan Wuchty, Danny Z. Chen,
and
Jesús
A. Izaguirre
4.
Prediction of Protein-Protein Interactions: A Study of the Co-evolution
Model
........................................................... 61
Itai Sharon, Jason V. Davis, and Golan
Tona
5.
Computational Reconstruction of Protein-Protein Interaction Networks:
Algorithms and Issues
............................................... 89
Eric Franzosa,
Bolan
Linghu, and
Tu
Xia
6.
Prediction and Integration of Regulatory and Protein-Protein Interactions
...... 101
Duangdao Wichadakul, Jason McDermott, and Ram Samudrala
7.
Detecting Hierarchical Modularity in Biological Networks
................... 145
Erzsébet Ravasz
Part II: Network Inference
8.
Methods to Reconstruct and Compare Transcriptional Regulatory Networks
.... 163
M. M
a dan
Babu,
Benjamin Lang, and L. Aravind
9.
Learning Global Models of Transcriptional Regulatory Networks from Data
..... 181
Aviv Madar and Richard Bonneau
10.
Inferring Molecular Interactions Pathways from eQTL Data
................. 211
Imran Rashid, Jason McDermott, and Ram Samudrala
11.
Methods for the Inference of Biological Pathways and Networks
.............. 225
Roger E. Bumgarner and Ka Tee Teung
Part III: Network Dynamics
12.
Exploring Pathways from Gene Co-expression to Network Dynamics
.......... 249
Huai
Li,
Tu Sun,
and Ming Zhan
13.
Network Dynamics
................................................. 269
Herbert M.
Sauro
ХІ
xii Contents
14.
Kinetic Modeling of Biological Systems
................................. 311
Haluk
Resat, Linda Petzold, and Michel E. Pettigrew
15.
Guidance for Data Collection and Computational Modelling of Regulatory
Networks
........................................................ 337
Adam Christopher Palmer, and Keith Edward Shearwin
Part IV: Function and Evolutionary Systems Biology
16.
A Maximum Likelihood Method for Reconstruction of the Evolution
of Eukaryotic Gene Structure
......................................... 357
Lir
an
Carmel,
Igor B. Rogozin, Yuri I. Wolf, and Eugene V. Koonin
17.
Enzyme Function Prediction with
Interpretable
Models
.................... 373
Omar Syed and Golan Yona
18.
Using Evolutionary Information to Find Specificity-Determining
and Co-evolving Residues
............................................ 421
Grigory Kolesov and Leonid A. Mirny
19.
Connecting Protein Interaction Data, Mutations, and Disease
Using Bioinformatics
............................................... 449
Jake
Ύ.
Chen, Eunseog Youn, and Sean D. Mooney
20.
Effects of Functional Bias on Supervised Learning of a Gene Network Model
.... 463
Insuk Lee and Edward
M. Marcotte
Part V: Computational Infrastructure for Systems Biology
21.
Comparing Algorithms for Clustering of Expression Data: How to Assess
Gene Clusters
..................................................... 479
Golan Yona, William Dirks, and Shafyuat Rahman
22.
The
Bioverse
API and Web Application
................................. 511
Michal
Guerquin, Jason McDermott,
Zach
Erazier,
and Ram Samudrala
23.
Computational Representation of Biological Systems
....................... 535
Zach
Erazier,
Jason McDermott,
Michal
Guerquin, and Ram Samudrala
24.
Biological Network Inference and Analysis Using SEBINI and CABIN
......... 551
Ronald Taylor and Mudita Singhal
Index
................................................................ 577
|
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| dewey-tens | 570 - Biology |
| discipline | Biologie |
| format | Book |
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| indexdate | 2024-07-09T21:30:36Z |
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| isbn | 9781588299055 |
| language | English |
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| physical | XVIII, 587 S. Ill., graph. Darst. |
| publishDate | 2009 |
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| publisher | Humana |
| record_format | marc |
| series | Methods in molecular biology |
| series2 | Methods in molecular biology |
| spelling | Computational systems biology ed. by Jason McDermott ... New York, NY Humana 2009 XVIII, 587 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Methods in molecular biology 541 Datenverarbeitung Bioinformatics Biological systems Computer simulation Computational Biology Computational biology Genomics Molecular biology Data processing Proteomics Systems Biology Systems biology Molekulare Bioinformatik (DE-588)4531334-9 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Molekulare Bioinformatik (DE-588)4531334-9 s DE-604 McDermott, Jason Sonstige oth Methods in molecular biology 541 (DE-604)BV035362695 541 Digitalisierung UB Regensburg application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=017098184&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Computational systems biology Methods in molecular biology Datenverarbeitung Bioinformatics Biological systems Computer simulation Computational Biology Computational biology Genomics Molecular biology Data processing Proteomics Systems Biology Systems biology Molekulare Bioinformatik (DE-588)4531334-9 gnd |
| subject_GND | (DE-588)4531334-9 (DE-588)4143413-4 |
| title | Computational systems biology |
| title_auth | Computational systems biology |
| title_exact_search | Computational systems biology |
| title_full | Computational systems biology ed. by Jason McDermott ... |
| title_fullStr | Computational systems biology ed. by Jason McDermott ... |
| title_full_unstemmed | Computational systems biology ed. by Jason McDermott ... |
| title_short | Computational systems biology |
| title_sort | computational systems biology |
| topic | Datenverarbeitung Bioinformatics Biological systems Computer simulation Computational Biology Computational biology Genomics Molecular biology Data processing Proteomics Systems Biology Systems biology Molekulare Bioinformatik (DE-588)4531334-9 gnd |
| topic_facet | Datenverarbeitung Bioinformatics Biological systems Computer simulation Computational Biology Computational biology Genomics Molecular biology Data processing Proteomics Systems Biology Systems biology Molekulare Bioinformatik Aufsatzsammlung |
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