Bacteria from fish and other aquatic animals: a practical identification manual
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| Format: | Book |
| Language: | English |
| Published: |
Wallingford
CABI Publ.
2004
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| Subjects: | |
| Online Access: | Inhaltsverzeichnis Inhaltsverzeichnis |
| Physical Description: | XIV, 361 S. Ill. |
| ISBN: | 0851997384 |
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| 245 | 1 | 0 | |a Bacteria from fish and other aquatic animals |b a practical identification manual |c by Nicky B. Buller |
| 264 | 1 | |a Wallingford |b CABI Publ. |c 2004 | |
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| 650 | 7 | |a Bacterial Diseases |2 cabt | |
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| 700 | 1 | |a Buller, Nicky B. |4 edt | |
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| adam_text | Titel: Bacteria from fish and other aquatic animals
Autor: Buller, Nicky B.
Jahr: 2004
Contents
List of Tables and Figures vii
Foreword: J.A. Plumb ix
Acknowledgements x
Introduction xii
1 Aquatic Animal Species and Organism Relationship 1
1.1 Host Species, Bacteria and Disease 1
1.2 Bacterial Diseases 1
1.3 Bacteria and Relationship to Host 37
1.4 Taxonomy and Disease Status of Bacteria 75
2 Bacteriological Culture Techniques: Microscopy, Culture and Identification 83
2.1 Specimen Collection and Submission 84
2.2 Culture and Incubation 85
2.3 Examination of Culture Plates 85
2.4 Biochemical Identification Tests 114
2.5 Inoculation of Biochemical Identification Sets 115
2.6 API Identification Systems 116
3 Interpretation of Biochemical Identification Tests and Sets 117
3.1 Conventional Media: Biochem Set 117
3.2 Identification Tests and their Interpretation 117
3.3 Using the Biochemical Identification Tables 123
3.4 Interpretation and Identification of Genera and Species 123
3.5 Antisera Available 136
4 Biochemical Identification Tables 137
4.1 Results for Conventional Biochemical Tests - Biochem Set 137
4.2 Results for API Kits 138
5 Technical Methods 222
5.1 Total Bacterial Count (TBC) 222
Contents
5.2 Microscopy 224
5.3 Storage of Isolates 224
6 Techniques for the Molecular Identification of Bacteria 225
6.1 Molecular Identification by PCR Using Specific Primers 225
6.2 PCR Protocols 234
6.3 Molecular Identification by 16S rDNA Sequencing 236
6.4 Fluorescence in Situ Hybridization (FISH) 242
7 Preparation of Media for Culture and Identification 244
7.1 General Isolation and Selective Media 244
7.2 Biochemical Test Media 261
Further Reading and Other Information Sources 278
Appendix: Common Name and Scientific Name of Aquatic Animals 281
Glossary of Terms 287
References 292
Index 329
List of Tables and Figures
Tables
Table 1.1. Host species and organism relationship.
Table 1.2. Bacterial pathogens and saprophytes offish and other aquatic animals.
Table 2.1. Outline of steps for culture and identification.
Table 2.2. General culture.
Table 2.3. Specific culture requirements of organisms.
Table 2.4. Microscopic and cultural characteristics.
Table 3.1. Interpretation of tests for biochem set .
Table 3.2. Camobacterium, Lactobacillus, Vagococcus and Renibacterium differentiation.
Table 3.3. Differential tests for some non-fastidious fish pathogenic Gram-positive cocci and rods.
Table 3.4. Differential characteristics of the genera within the family Flavobacteriaceae.
Table 3.5. Further differential characteristics for the genera in the family Flavobacteriaceae.
Table 3.6. Additional tests for differentiation of biotypes of P. damselae.
Table 3.7. Differentiation of V. alginolyticus and V. harveyi.
Table 4.1. Aeromonas sa/monicida (non-motile Aeromonas species).
Table 4.2. Aeromonas spp. Phenotypic tests according to DNA hydridization groups.
Table 4.3. Aeromonas spp. — motile.
Table 4.4. Anaerobes.
Table 4.5. Brucella spp.
Table 4.6. Ctyptococcus.
Table 4.7. Cytophaga-Flavobacteriaceae-Bacteroides group - pathogenic.
Table 4.8. Cytophaga-Flavobacteriaceae-Bacteroides group - environmental.
Table 4.9. Gram-negative coccobacilii and cocci.
Table 4.10. Gram-negative, oxidase-negative rods.
Table 4.11. Gram-negative, oxidase-positive rods.
Table 4.12. Helicobacter spp.
Table 4.13. Gram-positive cocci.
Table 4.14. Gram-positive rods.
Table 4.15. Mycobacterium and Nocardia spp.
Table 4.16. Mycobacterium spp. - additional tests.
Table 4.17. Mycoplasma spp.
Table 4.18. Listonella spp.
List of Tables and Figures
Table 4.19. Moritelh spp.
Table 4.20. Photobacterium spp.
Table 4.21. Vibrio - pathogenic species.
Table 4.22. Vibrio - environmental species.
Table 4.23. API 20E database biochemical results.
Table 4.24. API 20E database numbers (organisms listed alphabetically).
Table 4.25. API 20E database numbers (numbers in ascending order).
Table 4.26. API 20NE database biochemical results.
Table 4.27. API 50CH database biochemical results.
Table 4.28. API Coryne database biochemical results.
Table 4.29. API 20 Strep database biochemical results.
Table 4.30. API Rapid ID32 Strep database biochemical results.
Table 4.31. API Zym database results.
Table 4.32. Strains quoted in references.
Table 5.1. Total bacterial counts at sites in oyster hatcheries: indication of healthy and diseased
states.
Table 6.1. list of specific primers available for PCR detection of aquatic organisms.
Table 6.2. Standard PCR protocol.
Table 6.3. Universal eubacterial primers for 16S rDNA sequencing.
Table 6.4. Suggested primer pairs.
Table 6.5. Universal primers for amplification of 16S rDNA from Vibrio spp.
Table 6.6. Sequencing primers for the 16S rDNA from Vibrio spp.
Table 6.7. Sequencing PCR master mix.
Figures
Figure 4.1. Schematic for using the biochemical identification tables.
Photographic section after p. xiv
|
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| author2 | Buller, Nicky B. |
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| dewey-search | 579.3176 |
| dewey-sort | 3579.3176 |
| dewey-tens | 570 - Biology |
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| isbn | 0851997384 |
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| spelling | Bacteria from fish and other aquatic animals a practical identification manual by Nicky B. Buller Wallingford CABI Publ. 2004 XIV, 361 S. Ill. txt rdacontent n rdamedia nc rdacarrier Fish Diseases cabt Bacterial Diseases cabt Bacteriology cabt Buller, Nicky B. edt http://www.loc.gov/catdir/toc/ecip043/2003009624.html Inhaltsverzeichnis HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=022077643&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Bacteria from fish and other aquatic animals a practical identification manual Fish Diseases cabt Bacterial Diseases cabt Bacteriology cabt |
| title | Bacteria from fish and other aquatic animals a practical identification manual |
| title_auth | Bacteria from fish and other aquatic animals a practical identification manual |
| title_exact_search | Bacteria from fish and other aquatic animals a practical identification manual |
| title_full | Bacteria from fish and other aquatic animals a practical identification manual by Nicky B. Buller |
| title_fullStr | Bacteria from fish and other aquatic animals a practical identification manual by Nicky B. Buller |
| title_full_unstemmed | Bacteria from fish and other aquatic animals a practical identification manual by Nicky B. Buller |
| title_short | Bacteria from fish and other aquatic animals |
| title_sort | bacteria from fish and other aquatic animals a practical identification manual |
| title_sub | a practical identification manual |
| topic | Fish Diseases cabt Bacterial Diseases cabt Bacteriology cabt |
| topic_facet | Fish Diseases Bacterial Diseases Bacteriology |
| url | http://www.loc.gov/catdir/toc/ecip043/2003009624.html http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=022077643&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| work_keys_str_mv | AT bullernickyb bacteriafromfishandotheraquaticanimalsapracticalidentificationmanual |
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