Microbial gene essentiality: protocols and bioinformatics
Gespeichert in:
| Weitere Verfasser: | |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Totowa, NJ
Humana
2008
|
| Schriftenreihe: | Methods in molecular biology
416 |
| Schlagworte: | |
| Online-Zugang: | Microbial gene essentiality Inhaltsverzeichnis |
| Beschreibung: | XIV, 486 S. Ill., graph. Darst. |
| ISBN: | 1588293785 9781588293787 |
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| 490 | 1 | |a Methods in molecular biology |v 416 | |
| 650 | 4 | |a Bio-informatique | |
| 650 | 4 | |a Génétique microbienne | |
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| 650 | 4 | |a Computational biology |v Laboratory manuals | |
| 650 | 4 | |a Genes, Essential |x genetics |v Laboratory Manuals | |
| 650 | 4 | |a Genetic Techniques |v Laboratory Manuals | |
| 650 | 4 | |a Genetics, Microbial |x methods |v Laboratory Manuals | |
| 650 | 4 | |a Microbial genetics |v Laboratory manuals | |
| 650 | 4 | |a Microbiological Techniques |v Laboratory Manuals | |
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Datensatz im Suchindex
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| adam_text | CONTENTS PREFACE V CONTRIBUTORS XI INTRODUCTION OVERVIEW OF WHOLE-GENOME
ESSENTIALITY ANALYSIS KAREN ]OY SHAW 3 PART I EXPERIMENTAL PROTOCOLS IA
POPULATIONAL GENOME-WIDE ESSENTIALITY SCREENS 2 TRANSPOSON-BASED
STRATEGIES FOR THE IDENTIFICATION OF ESSENTIAL BACTERIAL GENES WILLIAM
S. REZNIKOFF AND KELLY M. WINTERBERG 13 3 IDENTIFICATION AND ANALYSIS OF
ESSENTIAL GENES IN HAEMOPHILUS INFLUENZAE SANDY M.S. WONG AND BRIAN L,
AKERJEY 27 4 TRANSPOSON SITE HYBRIDIZATION IN MYEOBAETERIUM TUBEREULOSIS
]EFFREY P. MURRY, CHRISTOPHER M. SOSSETTI. ]AMES M. LENE, ZHIFANG XIE,
AND FRIC ]. RUBIN 45 5 ESSENTIAL GENES IN THE INFECTION MODEL OF
PSEUDOMONAS AERUGINOSA PCR-BASED SIGNATURE-TAGGED MUTAGENESIS FRENCOIS
SENSCHEGRIN, IRENA KUKEVLCE-LBRULJ. AND ROGER C. LEVESQUE 61 6
WHOLE-GENOME DETECTION OF CONDITIONALLY ESSENTIAL AND DISPENSABLE GENES
IN ESEHERIEHIA EOLI VIA GENETIC FOOTPRINTING MICHAEL D. SCHOLLE AND
SVETLANA Y. GERDES 83 7 GENERATING A COLLECTION OF INSERTION MUTATIONS
IN THE STAPHYLOEOEEUS AUREUS GENOME USING BURSA AUREALIS TAEOK BEE,
FLIZABETH M. GLESS, O/AF SCHNEEWIND. AND DOMINIQUE MISSIAKAS 103 8
MULTIPURPOSE TRANSPOSON INSERTION LIBRARIES FOR LARGE-SCALE ANALYSIS OF
GENE FUNCTION IN YEAST ANUJ KUMAR * ***.************** 117 VII VIII IB
SYSTEMATIC COLLECTIONS OF KNOCKOUT MUTANTS CONTENTS 9 HOW TO MAKE A
DEFINED NEAR-SATURATION MUTANT LIBRARY. CASE 1: PSEUDOMONAS AERUGINOSA
PA01 MICHAELA. JACOBS 133 10 COMPARING INSERTION LIBRARIES IN TWO
PSEUDOMONAS AERUGINOSA STRAINS TO ASSESS GENE ESSENTIALITY NICOLE T.
LIBERATI, JONATHAN M. URBECH, TARA K. THURBER, GANG WU, AND FREDERICK M.
AUSUBEL 153 11 THE CONSTRUCTION OF SYSTEMATIC IN-FRAME, SINGLE-GENE
KNOCKOUT MUTANT COLLECTION IN ESCHERICHIA COLI K-12 TOMOYA BABA AND
HIROTADA MORI 171 12 THE APPLICATIONS OF SYSTEMATIC LN-FRAME,
SINGLE-GENE KNOCKOUT MUTANT COLLECTION OF ESCHERICHIA COLI K-12 TOMOYA
BABA, HSUEN-CHENG HUEN, KIRILL DATSENKO, BARRY L. WANNER, END HIROTADA
MORI 183 13 A NOVEL, SIMPLE, HIGH-THROUGHPUT METHOD FOR ISOLATION OF
GENOME- WIDE TRANSPOSON INSERTION MUTANTS OF ESCHERICHIA COLI K-12
TAKEYOSHI MIKI, YOSHIHIRO YAMAMOTO, AND HIDEO MATSUDA 195 14
HIGH-THROUGHPUT CREATION OF A WHOLE-GENOME COLLECTION OF YEAST KNOCKOUT
STRAINS ANGELA M. CHU AND RONALD W. DAVIS 205 15 ANALYSIS OF GENETIC
LNTERACTIONS ON A GENOME-WIDE SCALE IN BUDDING YEAST: DIPLOID-BASED
SYNTHETIC LETHALITY ANALYSIS BY MICROARRAY PAME/A B. MELUH, XUEWEN PAN,
DANIEL S. YUAN, CAROL TIFFANY, DU CHEN, SHARON SOOKHEL-MEHEDEO, XIAOLING
WANG, BRIAN D. PEYSER, RAFAELLRIZARRY, FORREST A. SPENCER, AND JEF D.
BOEKE 221 IC GENOME MINIMIZATION 16 SCARLESS ENGINEERING OF THE
ESCHERICHIA COLI GENOME TENUIS FEHER, I/DIK6 KARCAGI, ZSUZSA GYOERFY,
KINGA UMENHOFFER, BELINT CSOERGOE, AND GYOERGY P6SFAI 251 17 MINIMIZATION
OF THE ESCHERICHIA COLI GENOME USING THE TN5-TARGETED CRE/LOXP EXCISION
SYSTEM BYUNG LO YU AND SUN CHANG KIM 261 18 CONSTRUCTION OF LONG
CHROMOSOMAL DELETION MUTANTS OF ESCHERICHIA COLI AND MINIMIZATION OF THE
GENOME JUN-ICHI KALO AND MASAYUKI HASHIMOTO 279 CONTENTS IX 10
CONDITIONAL KNOCKOUTS 19 IDENTIFICATION OF ESSENTIAL GENES IN
STAPHYLOCOEEUS AUREUS BY CONSTRUCTION AND SCREENING OF CONDITIONAL
MUTANT LIBRARY DEZHONG YIN AND YINDUO LL 297 20 TECHNIQUES FOR THE
ISOLATION AND USE OF CONDITIONALLY EXPRESSED ANTISENSE RNA TO ACHIEVE
ESSENTIAL GENE KNOCKDOWNS IN STAPHYLOCOECUS AUREUS AI/RN FORSYTH AND
LIANGSU WANG 307 21 INTRODUCTION OF CONDITIONAL LETHAI AMBER MUTATIONS
IN ESEHERICHIA EOLI CHRISTOPHER D. HERRING 323 PART 11 BIOINFORMATICS
IIA STATISTICS 22 STATISTICAL METHODS FOR BUILDING RANDOM TRANSPOSON
MUTAGENESIS LIBRARIES OLIVER WI/I 339 23 STATISTICAL EVALUATION OF
GENETIC FOOTPRINTING DATA GSBOR BELERSI 355 24 MODELING COMPETITIVE
OUTGROWTH OF MUTANT POPULATIONS: WHY 00 ESSENTIALITY SCREENS YIELD
DIVERGENT RESULTS? ALEXANDER I. GRENOV AND SVET/ANA Y. GERDES 361 25
STATISTICAL ANALYSIS OF FITNESS DATA DETERMINED BY TAG HYBRIDIZATION ON
MICROARRAYS BRIAN D. PEYSER, REISEL LRIZERRY, AND FORREST A. SPENCER 369
IIB DATA INTEGRATION AND MODELING 26 PROFILING OF ESEHERIEHIA EOLI
CHROMOSOME DATABASE YUKIKO YEMEZEKI. HIRONORI NIKI, AND JUN-ICHL KALO
385 27 GENE ESSENTIAL ITY ANALYSIS BASED ON DEG, A DATABASE OF ESSENTIAL
GENES CHUN-TING ZHANG AND REN ZHANG 391 28 DETECTION OF ESSENTIAL GENES
IN STREPTOEOEEUS PNEUMONIAE USING BIOINFORMATICS AND ALLELIC REPLACEMENT
MUTAGENESIS [EE-HOON SONG AND KWAN SOO KO 401 29 DESIGN AND APPLICATION
OF GENOME-SCALE RECONSTRUETED METABOLIE MODELS ISABE/ RECHE, LOCHEN
FOERSTER/ AND JENS NIE/SEN 409 X CONTENTS 30 PREDICTING GENE ESSENTIALITY
USING GENOME-SCALE IN SILICO MODELS ANDREW R. ]OYCE AND 8ERNHARD 0.
PA/SSON 433 31 COMPARATIVE APPROACH TO ANALYSIS OF GENE ESSENTIALITY
ANDRE; L. OSTERMAN AND SVETLANA Y. GERDES 459 INDEX 467
|
| adam_txt |
CONTENTS PREFACE V CONTRIBUTORS XI INTRODUCTION OVERVIEW OF WHOLE-GENOME
ESSENTIALITY ANALYSIS KAREN ]OY SHAW 3 PART I EXPERIMENTAL PROTOCOLS IA
POPULATIONAL GENOME-WIDE ESSENTIALITY SCREENS 2 TRANSPOSON-BASED
STRATEGIES FOR THE IDENTIFICATION OF ESSENTIAL BACTERIAL GENES WILLIAM
S. REZNIKOFF AND KELLY M. WINTERBERG 13 3 IDENTIFICATION AND ANALYSIS OF
ESSENTIAL GENES IN HAEMOPHILUS INFLUENZAE SANDY M.S. WONG AND BRIAN L,
AKERJEY 27 4 TRANSPOSON SITE HYBRIDIZATION IN MYEOBAETERIUM TUBEREULOSIS
]EFFREY P. MURRY, CHRISTOPHER M. SOSSETTI. ]AMES M. LENE, ZHIFANG XIE,
AND FRIC ]. RUBIN 45 5 ESSENTIAL GENES IN THE INFECTION MODEL OF
PSEUDOMONAS AERUGINOSA PCR-BASED SIGNATURE-TAGGED MUTAGENESIS FRENCOIS
SENSCHEGRIN, IRENA KUKEVLCE-LBRULJ. AND ROGER C. LEVESQUE 61 6
WHOLE-GENOME DETECTION OF CONDITIONALLY ESSENTIAL AND DISPENSABLE GENES
IN ESEHERIEHIA EOLI VIA GENETIC FOOTPRINTING MICHAEL D. SCHOLLE AND
SVETLANA Y. GERDES 83 7 GENERATING A COLLECTION OF INSERTION MUTATIONS
IN THE STAPHYLOEOEEUS AUREUS GENOME USING BURSA AUREALIS TAEOK BEE,
FLIZABETH M. GLESS, O/AF SCHNEEWIND. AND DOMINIQUE MISSIAKAS 103 8
MULTIPURPOSE TRANSPOSON INSERTION LIBRARIES FOR LARGE-SCALE ANALYSIS OF
GENE FUNCTION IN YEAST ANUJ KUMAR * ***.************** 117 VII VIII IB
SYSTEMATIC COLLECTIONS OF KNOCKOUT MUTANTS CONTENTS 9 HOW TO MAKE A
DEFINED NEAR-SATURATION MUTANT LIBRARY. CASE 1: PSEUDOMONAS AERUGINOSA
PA01 MICHAELA. JACOBS 133 10 COMPARING INSERTION LIBRARIES IN TWO
PSEUDOMONAS AERUGINOSA STRAINS TO ASSESS GENE ESSENTIALITY NICOLE T.
LIBERATI, JONATHAN M. URBECH, TARA K. THURBER, GANG WU, AND FREDERICK M.
AUSUBEL 153 11 THE CONSTRUCTION OF SYSTEMATIC IN-FRAME, SINGLE-GENE
KNOCKOUT MUTANT COLLECTION IN ESCHERICHIA COLI K-12 TOMOYA BABA AND
HIROTADA MORI 171 12 THE APPLICATIONS OF SYSTEMATIC LN-FRAME,
SINGLE-GENE KNOCKOUT MUTANT COLLECTION OF ESCHERICHIA COLI K-12 TOMOYA
BABA, HSUEN-CHENG HUEN, KIRILL DATSENKO, BARRY L. WANNER, END HIROTADA
MORI 183 13 A NOVEL, SIMPLE, HIGH-THROUGHPUT METHOD FOR ISOLATION OF
GENOME- WIDE TRANSPOSON INSERTION MUTANTS OF ESCHERICHIA COLI K-12
TAKEYOSHI MIKI, YOSHIHIRO YAMAMOTO, AND HIDEO MATSUDA 195 14
HIGH-THROUGHPUT CREATION OF A WHOLE-GENOME COLLECTION OF YEAST KNOCKOUT
STRAINS ANGELA M. CHU AND RONALD W. DAVIS 205 15 ANALYSIS OF GENETIC
LNTERACTIONS ON A GENOME-WIDE SCALE IN BUDDING YEAST: DIPLOID-BASED
SYNTHETIC LETHALITY ANALYSIS BY MICROARRAY PAME/A B. MELUH, XUEWEN PAN,
DANIEL S. YUAN, CAROL TIFFANY, DU CHEN, SHARON SOOKHEL-MEHEDEO, XIAOLING
WANG, BRIAN D. PEYSER, RAFAELLRIZARRY, FORREST A. SPENCER, AND JEF D.
BOEKE 221 IC GENOME MINIMIZATION 16 SCARLESS ENGINEERING OF THE
ESCHERICHIA COLI GENOME TENUIS FEHER, I/DIK6 KARCAGI, ZSUZSA GYOERFY,
KINGA UMENHOFFER, BELINT CSOERGOE, AND GYOERGY P6SFAI 251 17 MINIMIZATION
OF THE ESCHERICHIA COLI GENOME USING THE TN5-TARGETED CRE/LOXP EXCISION
SYSTEM BYUNG LO YU AND SUN CHANG KIM 261 18 CONSTRUCTION OF LONG
CHROMOSOMAL DELETION MUTANTS OF ESCHERICHIA COLI AND MINIMIZATION OF THE
GENOME JUN-ICHI KALO AND MASAYUKI HASHIMOTO 279 CONTENTS IX 10
CONDITIONAL KNOCKOUTS 19 IDENTIFICATION OF ESSENTIAL GENES IN
STAPHYLOCOEEUS AUREUS BY CONSTRUCTION AND SCREENING OF CONDITIONAL
MUTANT LIBRARY DEZHONG YIN AND YINDUO LL 297 20 TECHNIQUES FOR THE
ISOLATION AND USE OF CONDITIONALLY EXPRESSED ANTISENSE RNA TO ACHIEVE
ESSENTIAL GENE KNOCKDOWNS IN STAPHYLOCOECUS AUREUS AI/RN FORSYTH AND
LIANGSU WANG 307 21 INTRODUCTION OF CONDITIONAL LETHAI AMBER MUTATIONS
IN ESEHERICHIA EOLI CHRISTOPHER D. HERRING 323 PART 11 BIOINFORMATICS
IIA STATISTICS 22 STATISTICAL METHODS FOR BUILDING RANDOM TRANSPOSON
MUTAGENESIS LIBRARIES OLIVER WI/I 339 23 STATISTICAL EVALUATION OF
GENETIC FOOTPRINTING DATA GSBOR BELERSI 355 24 MODELING COMPETITIVE
OUTGROWTH OF MUTANT POPULATIONS: WHY 00 ESSENTIALITY SCREENS YIELD
DIVERGENT RESULTS? ALEXANDER I. GRENOV AND SVET/ANA Y. GERDES 361 25
STATISTICAL ANALYSIS OF FITNESS DATA DETERMINED BY TAG HYBRIDIZATION ON
MICROARRAYS BRIAN D. PEYSER, REISEL LRIZERRY, AND FORREST A. SPENCER 369
IIB DATA INTEGRATION AND MODELING 26 PROFILING OF ESEHERIEHIA EOLI
CHROMOSOME DATABASE YUKIKO YEMEZEKI. HIRONORI NIKI, AND JUN-ICHL KALO
385 27 GENE ESSENTIAL ITY ANALYSIS BASED ON DEG, A DATABASE OF ESSENTIAL
GENES CHUN-TING ZHANG AND REN ZHANG 391 28 DETECTION OF ESSENTIAL GENES
IN STREPTOEOEEUS PNEUMONIAE USING BIOINFORMATICS AND ALLELIC REPLACEMENT
MUTAGENESIS [EE-HOON SONG AND KWAN SOO KO 401 29 DESIGN AND APPLICATION
OF GENOME-SCALE RECONSTRUETED METABOLIE MODELS ISABE/ RECHE, LOCHEN
FOERSTER/ AND JENS NIE/SEN 409 X CONTENTS 30 PREDICTING GENE ESSENTIALITY
USING GENOME-SCALE IN SILICO MODELS ANDREW R. ]OYCE AND 8ERNHARD 0.
PA/SSON 433 31 COMPARATIVE APPROACH TO ANALYSIS OF GENE ESSENTIALITY
ANDRE; L. OSTERMAN AND SVETLANA Y. GERDES 459 INDEX 467 |
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| genre_facet | Aufsatzsammlung |
| id | DE-604.BV023360371 |
| illustrated | Illustrated |
| index_date | 2024-07-02T21:08:55Z |
| indexdate | 2024-07-09T21:16:49Z |
| institution | BVB |
| isbn | 1588293785 9781588293787 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-016543837 |
| oclc_num | 209342501 |
| open_access_boolean | |
| owner | DE-M49 DE-BY-TUM DE-11 |
| owner_facet | DE-M49 DE-BY-TUM DE-11 |
| physical | XIV, 486 S. Ill., graph. Darst. |
| publishDate | 2008 |
| publishDateSearch | 2008 |
| publishDateSort | 2008 |
| publisher | Humana |
| record_format | marc |
| series | Methods in molecular biology |
| series2 | Methods in molecular biology |
| spelling | Microbial gene essentiality protocols and bioinformatics ed. by Andrei L. Osterman ... Totowa, NJ Humana 2008 XIV, 486 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Methods in molecular biology 416 Bio-informatique Génétique microbienne Computational Biology Laboratory Manuals Computational biology Laboratory manuals Genes, Essential genetics Laboratory Manuals Genetic Techniques Laboratory Manuals Genetics, Microbial methods Laboratory Manuals Microbial genetics Laboratory manuals Microbiological Techniques Laboratory Manuals Bioinformatik (DE-588)4611085-9 gnd rswk-swf Mikroorganismus (DE-588)4039226-0 gnd rswk-swf Genanalyse (DE-588)4200230-8 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Mikroorganismus (DE-588)4039226-0 s Genanalyse (DE-588)4200230-8 s DE-604 Bioinformatik (DE-588)4611085-9 s b DE-604 Osterman, Andrei L. edt Methods in molecular biology 416 (DE-604)BV035362695 416 http://digitool.hbz-nrw.de:1801/webclient/DeliveryManager?pid=2344655&custom_att_2=simple_viewer Verlagsdaten Springer Microbial gene essentiality OEBV Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=016543837&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Microbial gene essentiality protocols and bioinformatics Methods in molecular biology Bio-informatique Génétique microbienne Computational Biology Laboratory Manuals Computational biology Laboratory manuals Genes, Essential genetics Laboratory Manuals Genetic Techniques Laboratory Manuals Genetics, Microbial methods Laboratory Manuals Microbial genetics Laboratory manuals Microbiological Techniques Laboratory Manuals Bioinformatik (DE-588)4611085-9 gnd Mikroorganismus (DE-588)4039226-0 gnd Genanalyse (DE-588)4200230-8 gnd |
| subject_GND | (DE-588)4611085-9 (DE-588)4039226-0 (DE-588)4200230-8 (DE-588)4143413-4 |
| title | Microbial gene essentiality protocols and bioinformatics |
| title_auth | Microbial gene essentiality protocols and bioinformatics |
| title_exact_search | Microbial gene essentiality protocols and bioinformatics |
| title_exact_search_txtP | Microbial gene essentiality protocols and bioinformatics |
| title_full | Microbial gene essentiality protocols and bioinformatics ed. by Andrei L. Osterman ... |
| title_fullStr | Microbial gene essentiality protocols and bioinformatics ed. by Andrei L. Osterman ... |
| title_full_unstemmed | Microbial gene essentiality protocols and bioinformatics ed. by Andrei L. Osterman ... |
| title_short | Microbial gene essentiality |
| title_sort | microbial gene essentiality protocols and bioinformatics |
| title_sub | protocols and bioinformatics |
| topic | Bio-informatique Génétique microbienne Computational Biology Laboratory Manuals Computational biology Laboratory manuals Genes, Essential genetics Laboratory Manuals Genetic Techniques Laboratory Manuals Genetics, Microbial methods Laboratory Manuals Microbial genetics Laboratory manuals Microbiological Techniques Laboratory Manuals Bioinformatik (DE-588)4611085-9 gnd Mikroorganismus (DE-588)4039226-0 gnd Genanalyse (DE-588)4200230-8 gnd |
| topic_facet | Bio-informatique Génétique microbienne Computational Biology Laboratory Manuals Computational biology Laboratory manuals Genes, Essential genetics Laboratory Manuals Genetic Techniques Laboratory Manuals Genetics, Microbial methods Laboratory Manuals Microbial genetics Laboratory manuals Microbiological Techniques Laboratory Manuals Bioinformatik Mikroorganismus Genanalyse Aufsatzsammlung |
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| volume_link | (DE-604)BV035362695 |
| work_keys_str_mv | AT ostermanandreil microbialgeneessentialityprotocolsandbioinformatics |