Bioinformatics algorithms: techniques and applications
Saved in:
| Format: | Book |
|---|---|
| Language: | English |
| Published: |
Hoboken, N.J.
Wiley-Interscience
2008
|
| Series: | Bioinformatics: computational techniques and engineering
|
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Item Description: | Includes bibliographical references and index |
| Physical Description: | XIV, 500 S. graph. Darst. |
| ISBN: | 9780470097731 0470097736 |
Staff View
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| 245 | 1 | 0 | |a Bioinformatics algorithms |b techniques and applications |c ed. by Ion I. Măndoiu ... |
| 264 | 1 | |a Hoboken, N.J. |b Wiley-Interscience |c 2008 | |
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| 490 | 0 | |a Bioinformatics: computational techniques and engineering | |
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Record in the Search Index
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| adam_text | CONTENTS
Preface
ix
Contributors
xi
1
Educating Biologists in the 21st Century: Bioinformatics Scientists
versus Bioinformatics Technicians
1
Pavel Pevzner
PARTI TECHNIQUES
7
2
Dynamic Programming Algorithms for Biological Sequence
and Structure Comparison
9
Yuzhen Ye and Haixu Tang
3
Graph Theoretical Approaches to Delineate Dynamics
of Biological Processes
29
Teresa M. Przytycka and Elena Zotenko
4
Advances in Hidden Markov Models for Sequence Annotation
55
Broňa Brejová,
Daniel
G.
Brown, and
Tomáš Vinař
5
Sorting- and FFT-Based Techniques in the Discovery of Biopattems
93
Sudha
Balla, Sanguthevar
Rajasekaran, and Jaime
Davila
vi
CONTENTS
6
A
Survey of Seeding for Sequence Alignment
117
Daniel G. Brown
7
The Comparison of Phylogenetic Networks: Algorithms
and Complexity
143
Paola Bonizzoni, Gianluca Della Vedova, Riccardo
Dondi, and
Giuncarlo
Mauri
PARTII
GENOME AND SEQUENCE ANALYSIS
175
8
Formal Models of Gene Clusters
177
Anne Bergeron, Cedric
Chauve,
and
Yannick
Gingras
9
Integer Linear Programming Techniques for Discovering
Approximate Gene Clusters
203
Sven Rahmann
and
Gunnar W.
Klau
10
Efficient Combinatorial Algorithms for
DNA
Sequence Processing
223
Bhaskar
DasGupta and Ming-Yang
Kao
11
Algorithms for Multiplex PCR Primer Set Selection with
Amplification Length Constraints
241
K.M.
Konwar, I.I.
Mändoiu, A.C.
Russell, and
A.A.
Shvartsman
12
Recent Developments in Alignment and Motif Finding
for Sequences and Networks
259
Sing-Hoi Sze
PART III MICROARRAY DESIGN AND DATA ANALYSIS
277
13
Algorithms for Oligonucleotide Microarray Layout
279
Sérgio A. De Carvalho
Jr. and
Sven Rahmann
14
Classification Accuracy Based Microarray Missing Value
Imputation
303
Yi Shi, Zhipeng
Cai,
and Guohui Lin
15
Meta-Analysis of Microarray Data
329
Saumyadipta Pyne, Steve Skiena, and Bruce Futcher
CONTENTS
vii
PART IV GENETIC VARIATION ANALYSIS
353
16
Phasing Genotypes Using a Hidden Markov Model
355
P.
Rastas,
M.
Koivisto,
H.
Mannila,
and
E. Ukkonen
17
Analytical and Algorithmic Methods for Haplotype
Frequency Inference: What Do They Tell Us?
373
Steven
Hecht
Orzack, Daniel Gusfield, Lakshman Subrahmanyan,
Laurent Essioux, and
Sebastien Lissarrague
18
Optimization Methods for Genotype Data Analysis
in Epidemiological Studies
395
Dumitru
Brinza, Jingwu He, and Alexander Zelikovsky
PARTV STRUCTURAL AND SYSTEMS BIOLOGY
417
19
Topological Indices in Combinatorial Chemistry
419
Sergey Bereg
20
Efficient Algorithms for Structural Recall in Databases
439
Hao Wang,
Patra
Volarath, and Robert W. Harrison
21
Computational Approaches to Predict Protein-Protein
and Domain-Domain Interactions
465
Raja Jothi and Teresa M. Przytycka
Index
493
|
| adam_txt |
CONTENTS
Preface
ix
Contributors
xi
1
Educating Biologists in the 21st Century: Bioinformatics Scientists
versus Bioinformatics Technicians
1
Pavel Pevzner
PARTI TECHNIQUES
7
2
Dynamic Programming Algorithms for Biological Sequence
and Structure Comparison
9
Yuzhen Ye and Haixu Tang
3
Graph Theoretical Approaches to Delineate Dynamics
of Biological Processes
29
Teresa M. Przytycka and Elena Zotenko
4
Advances in Hidden Markov Models for Sequence Annotation
55
Broňa Brejová,
Daniel
G.
Brown, and
Tomáš Vinař
5
Sorting- and FFT-Based Techniques in the Discovery of Biopattems
93
Sudha
Balla, Sanguthevar
Rajasekaran, and Jaime
Davila
vi
CONTENTS
6
A
Survey of Seeding for Sequence Alignment
117
Daniel G. Brown
7
The Comparison of Phylogenetic Networks: Algorithms
and Complexity
143
Paola Bonizzoni, Gianluca Della Vedova, Riccardo
Dondi, and
Giuncarlo
Mauri
PARTII
GENOME AND SEQUENCE ANALYSIS
175
8
Formal Models of Gene Clusters
177
Anne Bergeron, Cedric
Chauve,
and
Yannick
Gingras
9
Integer Linear Programming Techniques for Discovering
Approximate Gene Clusters
203
Sven Rahmann
and
Gunnar W.
Klau
10
Efficient Combinatorial Algorithms for
DNA
Sequence Processing
223
Bhaskar
DasGupta and Ming-Yang
Kao
11
Algorithms for Multiplex PCR Primer Set Selection with
Amplification Length Constraints
241
K.M.
Konwar, I.I.
Mändoiu, A.C.
Russell, and
A.A.
Shvartsman
12
Recent Developments in Alignment and Motif Finding
for Sequences and Networks
259
Sing-Hoi Sze
PART III MICROARRAY DESIGN AND DATA ANALYSIS
277
13
Algorithms for Oligonucleotide Microarray Layout
279
Sérgio A. De Carvalho
Jr. and
Sven Rahmann
14
Classification Accuracy Based Microarray Missing Value
Imputation
303
Yi Shi, Zhipeng
Cai,
and Guohui Lin
15
Meta-Analysis of Microarray Data
329
Saumyadipta Pyne, Steve Skiena, and Bruce Futcher
CONTENTS
vii
PART IV GENETIC VARIATION ANALYSIS
353
16
Phasing Genotypes Using a Hidden Markov Model
355
P.
Rastas,
M.
Koivisto,
H.
Mannila,
and
E. Ukkonen
17
Analytical and Algorithmic Methods for Haplotype
Frequency Inference: What Do They Tell Us?
373
Steven
Hecht
Orzack, Daniel Gusfield, Lakshman Subrahmanyan,
Laurent Essioux, and
Sebastien Lissarrague
18
Optimization Methods for Genotype Data Analysis
in Epidemiological Studies
395
Dumitru
Brinza, Jingwu He, and Alexander Zelikovsky
PARTV STRUCTURAL AND SYSTEMS BIOLOGY
417
19
Topological Indices in Combinatorial Chemistry
419
Sergey Bereg
20
Efficient Algorithms for Structural Recall in Databases
439
Hao Wang,
Patra
Volarath, and Robert W. Harrison
21
Computational Approaches to Predict Protein-Protein
and Domain-Domain Interactions
465
Raja Jothi and Teresa M. Przytycka
Index
493 |
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| spelling | Bioinformatics algorithms techniques and applications ed. by Ion I. Măndoiu ... Hoboken, N.J. Wiley-Interscience 2008 XIV, 500 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier Bioinformatics: computational techniques and engineering Includes bibliographical references and index Bioinformatics Algorithms Algorithmus (DE-588)4001183-5 gnd rswk-swf Bioinformatik (DE-588)4611085-9 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Bioinformatik (DE-588)4611085-9 s Algorithmus (DE-588)4001183-5 s DE-604 Măndoiu, Ion Sonstige oth Digitalisierung UB Regensburg application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=016543679&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Bioinformatics algorithms techniques and applications Bioinformatics Algorithms Algorithmus (DE-588)4001183-5 gnd Bioinformatik (DE-588)4611085-9 gnd |
| subject_GND | (DE-588)4001183-5 (DE-588)4611085-9 (DE-588)4143413-4 |
| title | Bioinformatics algorithms techniques and applications |
| title_auth | Bioinformatics algorithms techniques and applications |
| title_exact_search | Bioinformatics algorithms techniques and applications |
| title_exact_search_txtP | Bioinformatics algorithms techniques and applications |
| title_full | Bioinformatics algorithms techniques and applications ed. by Ion I. Măndoiu ... |
| title_fullStr | Bioinformatics algorithms techniques and applications ed. by Ion I. Măndoiu ... |
| title_full_unstemmed | Bioinformatics algorithms techniques and applications ed. by Ion I. Măndoiu ... |
| title_short | Bioinformatics algorithms |
| title_sort | bioinformatics algorithms techniques and applications |
| title_sub | techniques and applications |
| topic | Bioinformatics Algorithms Algorithmus (DE-588)4001183-5 gnd Bioinformatik (DE-588)4611085-9 gnd |
| topic_facet | Bioinformatics Algorithms Algorithmus Bioinformatik Aufsatzsammlung |
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