Protein structure prediction:
Saved in:
| Format: | Book |
|---|---|
| Language: | English |
| Published: |
Totowa, NJ
Humana Press
2008
|
| Edition: | 2. ed. |
| Series: | Methods in molecular biology
413 |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Item Description: | Includes bibliographical references and index |
| Physical Description: | XII, 337 S. Ill., graph. Darst. 24 cm |
| ISBN: | 9781588297525 |
Staff View
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| 245 | 1 | 0 | |a Protein structure prediction |c ed. by Mohammed J. Zaki ... |
| 250 | |a 2. ed. | ||
| 264 | 1 | |a Totowa, NJ |b Humana Press |c 2008 | |
| 300 | |a XII, 337 S. |b Ill., graph. Darst. |c 24 cm | ||
| 336 | |b txt |2 rdacontent | ||
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| 490 | 1 | |a Methods in molecular biology |v 413 | |
| 500 | |a Includes bibliographical references and index | ||
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| 650 | 4 | |a Proteins |x Structure |x Mathematical models | |
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Record in the Search Index
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|---|---|
| adam_text | Contents
Preface
...............................................................
v
Contributors
.......................................................... xi
Part I: Overview of Protein Structure Prediction
1
A Historical Perspective of Template-Based Protein Structure
Prediction
¡un-tao Guo, Kyle Ellrott, and Ying Xu
............................ 3
2
The Assessment of Methods for Protein Structure Prediction
Anna
Tramontano, Domenico Cozzetto,
Alejandro Giorgetti, and
Domenico Raimondo
.......................................... 43
Part II: Template-based Methods
3
Aligning Sequences to Structures
liam
James McGuffin
............................................. 61
4
Protein Structure Prediction Using Threading
Jinbo Xu, Fengjiao, and
Libo Yu
.................................. 91
Part III: Structure Alignment and Indexing
5
Algorithms for Multiple Protein Structure Alignment
and Structure-Derived Multiple Sequence Alignment
Maxim Shatsky, Ruth Nussinov, and Haim J. Wolf son
............. 125
6
Indexing Protein Structures Using Suffix Trees
Feng
Gao
and Mohammed J. Zaki
................................. 147
Part IV: Protein Features Prediction
7
Hidden Markov Models for Prediction of Protein Features
Christopher Bystroff and Anders Krogh
........................... 173
8
The Pros and Cons of Predicting Protein Contact Maps
Lisa
Bartofí,
Em idio
Caprìottì, Piero Farìselli, Pier Luigi Martelli,
and
Rita Casadio
..........·.................................... 199
9
Roadmap Methods for Protein Folding
Mark Moll, David
Schwarz,
and
Lydia £
Kavraki.
................. 219
ix
Contents
Part V: Methods
for
de novo
Structure Prediction
10
Scoring Functions for
De Novo
Protein Structure Prediction
Revisited
Shing-Chung Ngan, Ling-Hong Hung, Tianyun Liu, and Ram
Samudrala
..................................................... 243
11
Protein-Protein Docking: Overview and Performance Analysis
Kevin Wiehe, Matthew W. Peterson, Brian Pierce, Julian Mintseris,
and Zhiping Weng
............................................. 283
12
Molecular Dynamics Simulations of Protein Folding
Angel E. Garcia
................................................... 315
Index
.................................................................331
|
| adam_txt |
Contents
Preface
.
v
Contributors
. xi
Part I: Overview of Protein Structure Prediction
1
A Historical Perspective of Template-Based Protein Structure
Prediction
¡un-tao Guo, Kyle Ellrott, and Ying Xu
. 3
2
The Assessment of Methods for Protein Structure Prediction
Anna
Tramontano, Domenico Cozzetto,
Alejandro Giorgetti, and
Domenico Raimondo
. 43
Part II: Template-based Methods
3
Aligning Sequences to Structures
liam
James McGuffin
. 61
4
Protein Structure Prediction Using Threading
Jinbo Xu, Fengjiao, and
Libo Yu
. 91
Part III: Structure Alignment and Indexing
5
Algorithms for Multiple Protein Structure Alignment
and Structure-Derived Multiple Sequence Alignment
Maxim Shatsky, Ruth Nussinov, and Haim J. Wolf son
. 125
6
Indexing Protein Structures Using Suffix Trees
Feng
Gao
and Mohammed J. Zaki
. 147
Part IV: Protein Features Prediction
7
Hidden Markov Models for Prediction of Protein Features
Christopher Bystroff and Anders Krogh
. 173
8
The Pros and Cons of Predicting Protein Contact Maps
Lisa
Bartofí,
Em'idio
Caprìottì, Piero Farìselli, Pier Luigi Martelli,
and
Rita Casadio
.·. 199
9
Roadmap Methods for Protein Folding
Mark Moll, David
Schwarz,
and
Lydia £
Kavraki.
. 219
ix
Contents
Part V: Methods
for
de novo
Structure Prediction
10
Scoring Functions for
De Novo
Protein Structure Prediction
Revisited
Shing-Chung Ngan, Ling-Hong Hung, Tianyun Liu, and Ram
Samudrala
. 243
11
Protein-Protein Docking: Overview and Performance Analysis
Kevin Wiehe, Matthew W. Peterson, Brian Pierce, Julian Mintseris,
and Zhiping Weng
. 283
12
Molecular Dynamics Simulations of Protein Folding
Angel E. Garcia
. 315
Index
.331 |
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| format | Book |
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| illustrated | Illustrated |
| index_date | 2024-07-02T20:51:07Z |
| indexdate | 2024-07-09T21:15:38Z |
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| isbn | 9781588297525 |
| language | English |
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| physical | XII, 337 S. Ill., graph. Darst. 24 cm |
| publishDate | 2008 |
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| publisher | Humana Press |
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| series | Methods in molecular biology |
| series2 | Methods in molecular biology |
| spelling | Protein structure prediction ed. by Mohammed J. Zaki ... 2. ed. Totowa, NJ Humana Press 2008 XII, 337 S. Ill., graph. Darst. 24 cm txt rdacontent n rdamedia nc rdacarrier Methods in molecular biology 413 Includes bibliographical references and index Mathematisches Modell Proteins Structure Mathematical models Amino acid sequence Proteine (DE-588)4076388-2 gnd rswk-swf Strukturmodellierung (DE-588)4139591-8 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Proteine (DE-588)4076388-2 s Strukturmodellierung (DE-588)4139591-8 s b DE-604 Zaki, Mohammed J. 1971- Sonstige (DE-588)121766799 oth Methods in molecular biology 413 (DE-604)BV035362695 413 Digitalisierung UB Regensburg application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=016497476&sequence=000004&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Protein structure prediction Methods in molecular biology Mathematisches Modell Proteins Structure Mathematical models Amino acid sequence Proteine (DE-588)4076388-2 gnd Strukturmodellierung (DE-588)4139591-8 gnd |
| subject_GND | (DE-588)4076388-2 (DE-588)4139591-8 (DE-588)4143413-4 |
| title | Protein structure prediction |
| title_auth | Protein structure prediction |
| title_exact_search | Protein structure prediction |
| title_exact_search_txtP | Protein structure prediction |
| title_full | Protein structure prediction ed. by Mohammed J. Zaki ... |
| title_fullStr | Protein structure prediction ed. by Mohammed J. Zaki ... |
| title_full_unstemmed | Protein structure prediction ed. by Mohammed J. Zaki ... |
| title_short | Protein structure prediction |
| title_sort | protein structure prediction |
| topic | Mathematisches Modell Proteins Structure Mathematical models Amino acid sequence Proteine (DE-588)4076388-2 gnd Strukturmodellierung (DE-588)4139591-8 gnd |
| topic_facet | Mathematisches Modell Proteins Structure Mathematical models Amino acid sequence Proteine Strukturmodellierung Aufsatzsammlung |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=016497476&sequence=000004&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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