Holdings: Rice biology in the genomics era

Rice biology in the genomics era:

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Bibliographic Details
Other Authors:	Hirano, Hiroyuki (Editor)
Format:	Book
Language:	English
Published:	Berlin [u.a.] Springer Berlin 2008
Series:	Biotechnology in Agriculture and Forestry 62
Subjects:	Crop improvement Rice > Biotechnology Rice > Molecular genetics Gentechnologie Reiszüchtung Reis Transgene Pflanzen Molekularbiologie Genanalyse Aufsatzsammlung
Online Access:	Inhaltsverzeichnis
Physical Description:	XXI, 381 S. 68 schw.-w. Ill., 8 farb. Ill., 24 schw.-w. Tab., 25 schw.-w. Fotos, 8 farb. Fotos, 43 schw.-w. graph. Darst. 235 mm x 155 mm
ISBN:	9783540742487 3540742484

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adam_text	CONTENTS SEETION I GENOME-WIDE AND GENOME-BASED RESEARCH 1.1 THE RICE GENOME SEQUENEE AS AN INDISPENSABLE TOOL FOR CROP IMPROVEMENT 3 TAKUJI SASAKI, JIANZHONG WU, HIROSHI MIZUNO, BALTAZAR A. ANTONIO, AND TAKASHI MATSUMOTO 1 INTRODUCTION 3 2 MAJOR FEATURES OF THE RICE GENOME .. 4 3 COMPARATIVE ANALYSIS OF GENOME STRUCTURE WITHIN ORYZA SATIVA 6 4 COMPARATIVE ANALYSIS OF GENOME STRUCTURE IN THE GENUS ORYZA...: 7 5 COMPARATIVE ANALYSIS OF GENOME STRUCTURE IN THE GRASS FAMILY 9 6 CONCLUSION..... 10 REFERENCES 11 1.2 BIOINFORMATIES AND DATABASE OF THE RIEE GENOME............................. 13 HISATAKA NUMA, TSUYOSHI TANAKA, AND TAKESHI ITOH 1 INTRODUCTION 13 2 GENE-FINDING IN THE RICE GENOME..................................................... 13 3 COMPARISON OF GENE PREDICTION PROGRAMS........................................ 14 4 PREDICTION OF GENE FUNCTIONS............................................................ 16 5 THE RICE ANNOTATION PROJECT DATABASE 17 REFERENCES 20 1.3 SEQUENCING-BASED MEASUREMENTS OF MRNA AND SMALL RNA 23 KAN NOBUTA AND BLAKE C. MEYERS 1 INTRODUCTION 23 2 INRNA MPSS DATA..... 25 3 SMALL RNA MPSS 32 4 CONCLUSION.. 34 REFERENCES 35 VII VIII CONTENTS 1.4 MICROARRAY-BASED APPROAEHES TO RIEE TRANSCRIPTOME ANALYSIS ...... 37 LEI LI AND XING WANG DENG 1 INTRODUCTION 37 2 MICROARRAY PLATFONNS AND METHODS 37 3 APPLICATIONS OF MICROARRAYS IN RICE TRANSCRIPTOME ANALYSIS............ 39 4 TECHNICAL CHALLENGES AND RESOURCES FOR USING RICE MICROARRAY SYSTEMS... 45 5 FUTURE PERSPECTIVES 48 REFERENCES 49 1.5 HIGH-THROUGHPUT TRANSERIPTOME ANALYSIS IN RIEE FROM A GENOMIC PERSPEETIVE....................................................... 53 SHOSHI KIKUCHI 1 INTRODUCTION.............................. 53 2 THE RICE TRANSCRIPTOME: FROM EST COLLECTION TO CDNA-BASED MICROARRAY SYSTEMS.......... 53 3 RICE FULL-IENGTH CDNA CLONE COLLECTION PROJECL........................... 55 4 OLIGOARRAY SYSTEMS 61 5 GENE FAMILY ANALYSIS 63 6 FUTURE PERSPECTIVES 64 REFERENCES 65 1.6 ACTIVE TRANSPOSUNS IN RIEE................................................................... 69 TETSUYA NAKAZAKI, KEN NAITO, YUTAKA OKUMOTO, AND TAKATOSHI TANISAKA 1 INTRODUCTION....................... 69 2 DETECTION OF TRANSPOSON SEQUENCES IN RICE... 70 3 ACTIVE TRANSPOSONS OF RICE 72 4 CONCLUSION....................... 77 REFERENCES 77 1.7 HOMOLOGOUS REEOMBINATION-DEPENDENT GENE TARGETING AND AN ACTIVE DNA TRANSPOSON NDART-PROMOTED GENE TAGGING FOR RIEE FUNCTIONAL GENOMICS 81 YASUYO JOHZUKA-HISATOMI, MASAHIKO MAEKAWA, KYOKO TAKAGI, CHANG-HO EUN, TAKAKI YAMAUCHI, ZENPEI SHIMATANI, NISAR AHMED, HIROKO URAWA, KAZUO TSUGANE, RIE TERADA, AND SHIGERU IIDA 1 INTRODUCTION 81 2 HOMOLOGOUS RECOMBINATION-DEPENDENT GENE TARGETING 84 3 ACTIVE DNA TRANSPOSON NDART-PROMOTED GENE TAGGING..... 89 4 CURRENT STATUS AND FUTURE PROSPECTS 91 REFERENCES 92 CONTENTS IX 1.8 T-DNA TAGGING LINES......................................................................... ... 95 GYNHEUNG AN 1 INTRODUCTION 95 2 GENERATION OF T-DNAINSERTIONAL MUTANTS 95 3 GENERATION OF ACTIVATION-TAGGING MUTANTS........................................ 96 4 ENTRAPMENT TAGGING 98 5 DNA POOL SCREENING FOR REVERSE GENETICS........ 99 6 ESTABLISHMENT OF FLANKING SEQUENCE TAG (FST) DATABASES.............. 100 7 OBSTACLES IN T-DNA INSERTIONAL MUTAGENESIS 103 8 FUTURE PROSPECTS 103 REFERENCES .. 104 1.9 FREQUENT DNA TRANSFER AMONG MITOEHONDRIAL, PLASTID AND NUCLEAR GENOMES OF RIEE DURING EVOLUTION 107 MIKIO NAKAZONO AND ATSUSHI HIRAI 1 INTRODUCTION 107 2 PLASTID-TO-MITOCHONDRION DNA TRANSFER EVENTS 109 3 MITOCHONDRION-TO-NUCLEUS OR PLASTID-TO-NUCLEUS DNA TRANSFER EVENTS 110 4 DNA SEGMENTS FOUND COMMONLY IN ALL THREE GENOMES 113 5 NUCLEUS-TO-MITOCHONDRION DNA TRANSFER EVENTS 114 6 CONCLUSIONS AND FUTURE PERSPECTIVES . 114 REFERENCES . 115 SEETION 11 SIGNAL TRANSDUETION AND DEVELOPMENT 11.1 HORMONAL SIGNAL TRANSDUETION IN RIEE 121 AYAKO NAKAMURA AND MAKOTO MATSUOKA 1 INTRODUCTION.................................................................. .................... 121 2 GA SIGNALING IN RICE....................................................................... 122 3 BRASSINOSTEROID SIGNALING IN RICE.................................................... 126 4 AUXIN SIGNALING IN RICE ** 129 5 FUTURE PERSPECTIVES 131 REFERENCES.............................................................................................. 132 11.2 RIEE HETEROTRIMERIE G PROTEIN SIGNALING 135 YUKIMOTO IWASAKI, HISAHARU KATO, YUKIKO FUJISAWA, AND KATSUYUKI OKI 1 INTRODUCTION ....................... 135 2 GENES AND TRANSLATION PRODUCTS FOR RICE HETEROTRIMERIC G PROTEINS ...................... 135 3 MUTANTS WITH DEFECTS IN THE SUBUNIT GENES ENCODING PLANT HETEROTRIMERIC G PROTEINS ..**.. 138 X CONTENTS 4 ANALYSIS OF SIGNALING MEDIATED BY RIEE HETEROTRIMERIE G PROTEINS USING A CONSTITUTIVELY AETIVE FORM OFTHE CL SUBUNIT 138 5 MOLEEULES INTERAETING WITH ARABIDOPSIS GA 139 6 SIGNALING PATHWAYS MEDIATED BY PLANT HETEROTRIMERIE G PROTEINS. 141 7 FURTHER PERSPEETIVES......................................................................... 145 REFERENEES.............................................................................................. 146 11.3 GENETIC CONTROL OF EMBRYOGENESIS IN RIEE... 149 YUTAKA SATO 1 INTRODUETION.................................................................. .................... 149 2 MOLEEULAR MARKERS USED IN THE ANALYSIS OF RICE EMBRYOGENESIS .. 152 3 ANALYSIS OF ORGANOGENESIS DURING EMBRYOGENESIS 153 4 FUTURE PERSPEETIVES 158 REFERENEES.............................................................................................. 158 11.4 PHOTOPERIODIE FLOWERING IN RIEE 163 TAKESHI IZAWA 1 INTRODUETION 163 2 THE IMPORTANEE OF PHOTORECEPTION FOR PHOTOPERIODIE FLOWERING IN RIEE 164 3 QUANTITATIVETRAIT LOCI ANALYSES REVEAL THE CONSERVED FLORAL PATHWAY 165 4 A UNIQUE FLORAL PATHWAY EXISTS IN RIEE 166 5 THE IMPORTANCE OF FLORAL INHIBITION CONTROL UNDER LONG-DAY CONDITIONS... 167 6 NIGHT-BREAK EXPERIMENTS IN RICE 169 7 THE ROLES OF CIRCADIAN CLOCKS IN FLORAL INDUETION IN RIEE ARE STILL UNKNOWN 170 8 DIFFERENCES BETWEEN LONG-DAY AND SHORT-DAY PLANTS..................... 171 9 FUTURE PERSPECTIVES 173 REFERENEES 174 11.5 GENETIE REGULATION OF MERISTEM MAINTENANEE AND ORGAN SPECIFIEATION IN RIEE FLOWER DEVELOPMENT..................... 177 HIRO-YUKI HIRANO 1 INTRODUETION.................................................................. .................... 177 2 STRUCTURE OF THE INFIORESEENCE AND FLOWER IN RICE... 178 3 FLORAL MERISTEM............................................................................... 179 4 FLORAL ORGAN DEVELOPMENT 183 5 FUTURE PERSPECTIVES 186 REFERENEES... 187 CONTENTS XI 11.6 GENETIE DISSEETION OF SEXUAL REPRODUETION IN RIEE (ORYZA SATIVA L.)........................................................................... ......... 191 KEN-ICHI NONOMURA AND SHINICHIRO YAMAKI 1 INTRODUCTION...................................................................................... 191 2 REPRODUCTIVE ORGAN DEVELOPMENT................................................... 192 3 SPOROGENESIS 195 4 MEIOSIS............................................................................................. 196 5 GAMETOGENESIS................. 200 6 FUTURE PERSPECTIVES ON STUDIES IN RIEE SEXUAL REPRODUCTION 201 REFERENCES 202 11.7 MOLECULAR STUDIES ON CYTOPLASMIE MALE STERILITY-ASSOCIATED GENES AND RESTORER GENES IN RIEE 205 SOTA FUJII, TOMOHIKO KAZAMA, AND KINYA TORIYAMA 1 INTRODUETION...................................................................................... 205 2 TYPES OF CMS IN RIEE. 205 3 MITOCHONDRIAL CHIMERIC GENES...... 208 4 MOLECULAR CLONING OF RFL AND MOLEEULAR MAPPING OF OTHER RF GENES............................................................................. 210 5 APPROAEHES TOWARD UNDERSTANDING THE MECHANISM OF CMS INDUETION 213 6 CONCLUSION 214 REFERENCES.............................................................................................. 214 SEETION 111 EVOLUTION AND EEOLOGY 111.1 PBYLOGENY AND BIOGEOGRAPHY OF TBE GENUS ORYZA.. 219 DUNCAN A. VAUGHAN, SONG GE, AKITO KAGA, AND NORIHIKO TOMOOKA 1 INTRODUCTION 219 2 PHYLOGENY....................................................................................... 220 3 ORYZA BIOGEOGRAPHY 225 REFERENCES 231 111.2 CBROMOSOME AND GENOME EVOLUTION IN RIEE 235 NORI KURATA 1 INTRODUCTION 235 2 CHROMOSOMES IN THE DIFFERENT GENOMES 235 3 CLASSIFICATION OF GENOMES BASED ON CHROMOSOMEPAIRING........... 237 4 GENOME DUPLIEATION IN THE GENUS ORYZA 239 5 GENOME-WIDE EVOLUTION AMONG ORYZA SPECIES: GENOME SIZE, RETROTRANSPOSON AND CENTROMERE 240 6 REGIONAL GENOME EVOLUTION AMONG ORYZA SPECIES 241 XII CONTENTS 7 GENOME EVOLUTION IN THE POAEEAE FAMILY 242 REFERENEES 243 111.3 GENETIES OF SPECIATION IN RIEE 247 YOHEI KOIDE, KAZUMITSU ONISHI, AKIRA KANAZAWA, AND YOSHIO SANO 1 INTRODUETION 247 2 GENETIC MECHANISMS OF POST-MATING BARRIERS................................ 248 3 EVOLUTION OF REPRODUCTIVE ISOLATION.............................................. 254 4 CONCLUSIONS AND PERSPEETIVES 256 REFERENCES... 256 LILA GENETIE DIVERSITY IN WILD RELATIVES OF RIEE AND DOMESTIEATION EVENTS 261 HONG-WEI CAI, MASAHIRO AKIMOTO, AND HIROKO MORISHIMA 1 INTRODUCTION 261 2 GENETIC DIVERSITY OF AA-GENOME WILD TAXA................................. 262 3 DIFFERENTIATION WITHIN O. RUFIPOGON............................................... 265 4 GENETICS OF DOMESTICATION 268 REFERENCES 273 111.5 RIEE RETROPOSON,P-SINE, AND ITS USE FOR CLASSIFIEATION AND IDENTIFIEATION OF ORYZA SPECIES................................................... 277 HISAKO OHTSUBO, SUGURU TSUEHIMOTO, JIAN-HONG XU, CHAOYANG CHENG, MARCIA Y. KOUDO, NORI KURATA, AND EIICHI OHTSUBO 1 INTRODUCTION 277 2 P-SINE FAMILIES IN THE ORYZA GENUS 278 3 PHYLOGENETIC ANALYSIS OF ORYZA SPECIES BASED ON SINE INSERTION ANALYSIS............................................................ 280 4 SINE CODE IS AN EXCELLENT TOOL FOR IDENTIFIEATION OF ORYZA SPECIES....................................................................... ...... 285 5 FINAL REMARKS 288 6 FUTURE PERSPEETIVES......................................................................... 289 REFERENCES 289 SEETION IV IMPROVEMENT OF RIEE L V:L DETEETION AND MOLEEULAR CLONING OF GENES UNDERLYING QUANTITATIVE PHENOTYPIC VARIATIONS IN RIEE......... 295 TOSHIO YAMAMOTO AND MASAHIRO YANO 1 INTRODUCTION 295 2 MOLECULAR CLONING OF MAJOR QTLS WITH AGRONOMIE VALUES....... 295 CONTENTS XIII 3 IDENTIFIEATION OF MAJOR QTLS WITH AGRONOMIE VALUE..... 299 4 SYSTEMATIE GENETIE AND MOLEEULAR ANALYSIS AND UTILIZATION OF NATURAL VARIATIONS 302 5 FUTURE PROSPEETS 305 REFERENEES 306 IV.2 RIEE YIELDING AND PLANT HORMONES 309 MOTOYUKI ASHIKARI AND TOMOAKI SAKAMOTO 1 INTRODUETION 309 2 BREEDING OF SEMI-DWARF RIEE VARIETIES LED TO DRAMATIEALLY INEREASED GRAIN PRODUCTION 310 3 GIBBERELLINS REGULATE PLANT HEIGHT................................................ 310 4 BRASSINOSTEROIDS CONTROL LEAF ANGLE AND BIOMASS PRODUETION 314 5 CYTOKININS REGULATE GRAIN NUMBER 315 6 FUTURE PERSPEETIVES: AEEUMULATION OF YIELDING-RELATED GENES FOR BREEDING......................................................................... 316 REFERENEES 318 1 :3 REGULATION OF IRON AND ZINE UPTAKE AND TRANSLOEATION IN RIEE . . .. . 321 TAKANORI KOBAYASHI AND NAOKO K. NISHIZAWA 1 IRON (FE) AND ZINE (ZN) UPTAKE FROM THE RHIZOSPHERE MEDIATED BY MUGINEIE ACID FAMILY PHYTOSIDEROPHORES (MAS) 321 2 UPTAKE OF FE 2 + AND ZN 2 + IONS FROM THE RHIZOSPHERE 326 3 FE AND ZN TRANSLOEATION INSIDE THE PLANT BODY 327 4 REGULATION OF EXPRESSION OF FE UPTAKE-RELATED GENES 330 5 FUTURE PERSPEETIVES 332 REFERENEES 332 I :4 ABIOTIE STRESS...................................................................................... 337 TAKAYUKI OHNISHI, MIKIO NAKAZONO, AND NOBUHIRO TSUTSUMI 1 INTRODUETION.. 337 2 SIGNAL TRANSDUETION........................................................................ 337 3 PARTICULAR STRESSES 345 4 FUTURE PERSPEETIVES 351 REFERENEES 352 XIV CONTENTS IV.5 HEALTH-PROMOTING TRANSGENIE RIEE: APPLIEATION OF RIEE SEEDS AS A DIRECT DELIVERY SYSTEM FOR BIOAETIVE PEPTIDES IN HUMAN HEALTH. 357 FUMIO TAKAIWA, LIJUN YANG, AND HIROSHI YASUDA 1 INTRODUCTION 357 2 PLANT PRODUCTION SYSTEM AS A BIOREACTOR FOR FOREIGN RECOMBINANT PROTEINS 358 3 CHARACTERISTICS OF THE RICE SEED PRODUCTION SYSTEM AS A BIOREACTOR 358 4 PRODUCTION TOO1S REQUIRED FOR EXPRESSION OF RECOMBINANT PROTEINS 01 PEPTIDES IN RICE SEED................................ 359 5 CREATION OF FUNCTIONAL FOODS THAT CONTRIBUTE TO HUMAN HEALTH 363 REFERENCES 371 INDEX................................................................................................................ 375
adam_txt	CONTENTS SEETION I GENOME-WIDE AND GENOME-BASED RESEARCH 1.1 THE RICE GENOME SEQUENEE AS AN INDISPENSABLE TOOL FOR CROP IMPROVEMENT 3 TAKUJI SASAKI, JIANZHONG WU, HIROSHI MIZUNO, BALTAZAR A. ANTONIO, AND TAKASHI MATSUMOTO 1 INTRODUCTION 3 2 MAJOR FEATURES OF THE RICE GENOME . 4 3 COMPARATIVE ANALYSIS OF GENOME STRUCTURE WITHIN ORYZA SATIVA 6 4 COMPARATIVE ANALYSIS OF GENOME STRUCTURE IN THE GENUS ORYZA.: 7 5 COMPARATIVE ANALYSIS OF GENOME STRUCTURE IN THE GRASS FAMILY 9 6 CONCLUSION. 10 REFERENCES 11 1.2 BIOINFORMATIES AND DATABASE OF THE RIEE GENOME. 13 HISATAKA NUMA, TSUYOSHI TANAKA, AND TAKESHI ITOH 1 INTRODUCTION 13 2 GENE-FINDING IN THE RICE GENOME. 13 3 COMPARISON OF GENE PREDICTION PROGRAMS. 14 4 PREDICTION OF GENE FUNCTIONS. 16 5 THE RICE ANNOTATION PROJECT DATABASE 17 REFERENCES 20 1.3 SEQUENCING-BASED MEASUREMENTS OF MRNA AND SMALL RNA 23 KAN NOBUTA AND BLAKE C. MEYERS 1 INTRODUCTION 23 2 INRNA MPSS DATA. 25 3 SMALL RNA MPSS 32 4 CONCLUSION. 34 REFERENCES 35 VII VIII CONTENTS 1.4 MICROARRAY-BASED APPROAEHES TO RIEE TRANSCRIPTOME ANALYSIS . 37 LEI LI AND XING WANG DENG 1 INTRODUCTION 37 2 MICROARRAY PLATFONNS AND METHODS 37 3 APPLICATIONS OF MICROARRAYS IN RICE TRANSCRIPTOME ANALYSIS. 39 4 TECHNICAL CHALLENGES AND RESOURCES FOR USING RICE MICROARRAY SYSTEMS. 45 5 FUTURE PERSPECTIVES 48 REFERENCES 49 1.5 HIGH-THROUGHPUT TRANSERIPTOME ANALYSIS IN RIEE FROM A GENOMIC PERSPEETIVE. 53 SHOSHI KIKUCHI 1 INTRODUCTION. 53 2 THE RICE TRANSCRIPTOME: FROM EST COLLECTION TO CDNA-BASED MICROARRAY SYSTEMS. 53 3 RICE FULL-IENGTH CDNA CLONE COLLECTION PROJECL. 55 4 OLIGOARRAY SYSTEMS 61 5 GENE FAMILY ANALYSIS 63 6 FUTURE PERSPECTIVES 64 REFERENCES 65 1.6 ACTIVE TRANSPOSUNS IN RIEE. 69 TETSUYA NAKAZAKI, KEN NAITO, YUTAKA OKUMOTO, AND TAKATOSHI TANISAKA 1 INTRODUCTION. 69 2 DETECTION OF TRANSPOSON SEQUENCES IN RICE. 70 3 ACTIVE TRANSPOSONS OF RICE 72 4 CONCLUSION. 77 REFERENCES 77 1.7 HOMOLOGOUS REEOMBINATION-DEPENDENT GENE TARGETING AND AN ACTIVE DNA TRANSPOSON NDART-PROMOTED GENE TAGGING FOR RIEE FUNCTIONAL GENOMICS 81 YASUYO JOHZUKA-HISATOMI, MASAHIKO MAEKAWA, KYOKO TAKAGI, CHANG-HO EUN, TAKAKI YAMAUCHI, ZENPEI SHIMATANI, NISAR AHMED, HIROKO URAWA, KAZUO TSUGANE, RIE TERADA, AND SHIGERU IIDA 1 INTRODUCTION 81 2 HOMOLOGOUS RECOMBINATION-DEPENDENT GENE TARGETING 84 3 ACTIVE DNA TRANSPOSON NDART-PROMOTED GENE TAGGING. 89 4 CURRENT STATUS AND FUTURE PROSPECTS 91 REFERENCES 92 CONTENTS IX 1.8 T-DNA TAGGING LINES. . 95 GYNHEUNG AN 1 INTRODUCTION 95 2 GENERATION OF T-DNAINSERTIONAL MUTANTS 95 3 GENERATION OF ACTIVATION-TAGGING MUTANTS. 96 4 ENTRAPMENT TAGGING 98 5 DNA POOL SCREENING FOR REVERSE GENETICS. 99 6 ESTABLISHMENT OF FLANKING SEQUENCE TAG (FST) DATABASES. 100 7 OBSTACLES IN T-DNA INSERTIONAL MUTAGENESIS 103 8 FUTURE PROSPECTS 103 REFERENCES . 104 1.9 FREQUENT DNA TRANSFER AMONG MITOEHONDRIAL, PLASTID AND NUCLEAR GENOMES OF RIEE DURING EVOLUTION 107 MIKIO NAKAZONO AND ATSUSHI HIRAI 1 INTRODUCTION 107 2 PLASTID-TO-MITOCHONDRION DNA TRANSFER EVENTS 109 3 MITOCHONDRION-TO-NUCLEUS OR PLASTID-TO-NUCLEUS DNA TRANSFER EVENTS 110 4 DNA SEGMENTS FOUND COMMONLY IN ALL THREE GENOMES 113 5 NUCLEUS-TO-MITOCHONDRION DNA TRANSFER EVENTS 114 6 CONCLUSIONS AND FUTURE PERSPECTIVES . 114 REFERENCES . 115 SEETION 11 SIGNAL TRANSDUETION AND DEVELOPMENT 11.1 HORMONAL SIGNAL TRANSDUETION IN RIEE 121 AYAKO NAKAMURA AND MAKOTO MATSUOKA 1 INTRODUCTION. . 121 2 GA SIGNALING IN RICE. 122 3 BRASSINOSTEROID SIGNALING IN RICE. 126 4 AUXIN SIGNALING IN RICE ** 129 5 FUTURE PERSPECTIVES 131 REFERENCES. 132 11.2 RIEE HETEROTRIMERIE G PROTEIN SIGNALING 135 YUKIMOTO IWASAKI, HISAHARU KATO, YUKIKO FUJISAWA, AND KATSUYUKI OKI 1 INTRODUCTION . 135 2 GENES AND TRANSLATION PRODUCTS FOR RICE HETEROTRIMERIC G PROTEINS .. 135 3 MUTANTS WITH DEFECTS IN THE SUBUNIT GENES ENCODING PLANT HETEROTRIMERIC G PROTEINS .**. 138 X CONTENTS 4 ANALYSIS OF SIGNALING MEDIATED BY RIEE HETEROTRIMERIE G PROTEINS USING A CONSTITUTIVELY AETIVE FORM OFTHE CL SUBUNIT 138 5 MOLEEULES INTERAETING WITH ARABIDOPSIS GA 139 6 SIGNALING PATHWAYS MEDIATED BY PLANT HETEROTRIMERIE G PROTEINS. 141 7 FURTHER PERSPEETIVES. 145 REFERENEES. 146 11.3 GENETIC CONTROL OF EMBRYOGENESIS IN RIEE. 149 YUTAKA SATO 1 INTRODUETION. . 149 2 MOLEEULAR MARKERS USED IN THE ANALYSIS OF RICE EMBRYOGENESIS . 152 3 ANALYSIS OF ORGANOGENESIS DURING EMBRYOGENESIS 153 4 FUTURE PERSPEETIVES 158 REFERENEES. 158 11.4 PHOTOPERIODIE FLOWERING IN RIEE 163 TAKESHI IZAWA 1 INTRODUETION 163 2 THE IMPORTANEE OF PHOTORECEPTION FOR PHOTOPERIODIE FLOWERING IN RIEE 164 3 QUANTITATIVETRAIT LOCI ANALYSES REVEAL THE CONSERVED FLORAL PATHWAY 165 4 A UNIQUE FLORAL PATHWAY EXISTS IN RIEE 166 5 THE IMPORTANCE OF FLORAL INHIBITION CONTROL UNDER LONG-DAY CONDITIONS. 167 6 NIGHT-BREAK EXPERIMENTS IN RICE 169 7 THE ROLES OF CIRCADIAN CLOCKS IN FLORAL INDUETION IN RIEE ARE STILL UNKNOWN 170 8 DIFFERENCES BETWEEN LONG-DAY AND SHORT-DAY PLANTS. 171 9 FUTURE PERSPECTIVES 173 REFERENEES 174 11.5 GENETIE REGULATION OF MERISTEM MAINTENANEE AND ORGAN SPECIFIEATION IN RIEE FLOWER DEVELOPMENT. 177 HIRO-YUKI HIRANO 1 INTRODUETION. . 177 2 STRUCTURE OF THE INFIORESEENCE AND FLOWER IN RICE. 178 3 FLORAL MERISTEM. 179 4 FLORAL ORGAN DEVELOPMENT 183 5 FUTURE PERSPECTIVES 186 REFERENEES. 187 CONTENTS XI 11.6 GENETIE DISSEETION OF SEXUAL REPRODUETION IN RIEE (ORYZA SATIVA L.). . 191 KEN-ICHI NONOMURA AND SHINICHIRO YAMAKI 1 INTRODUCTION. 191 2 REPRODUCTIVE ORGAN DEVELOPMENT. 192 3 SPOROGENESIS 195 4 MEIOSIS. 196 5 GAMETOGENESIS. 200 6 FUTURE PERSPECTIVES ON STUDIES IN RIEE SEXUAL REPRODUCTION 201 REFERENCES '" 202 11.7 MOLECULAR STUDIES ON CYTOPLASMIE MALE STERILITY-ASSOCIATED GENES AND RESTORER GENES IN RIEE 205 SOTA FUJII, TOMOHIKO KAZAMA, AND KINYA TORIYAMA 1 INTRODUETION. 205 2 TYPES OF CMS IN RIEE. 205 3 MITOCHONDRIAL CHIMERIC GENES. 208 4 MOLECULAR CLONING OF RFL AND MOLEEULAR MAPPING OF OTHER RF GENES. 210 5 APPROAEHES TOWARD UNDERSTANDING THE MECHANISM OF CMS INDUETION 213 6 CONCLUSION 214 REFERENCES. 214 SEETION 111 EVOLUTION AND EEOLOGY 111.1 PBYLOGENY AND BIOGEOGRAPHY OF TBE GENUS ORYZA. 219 DUNCAN A. VAUGHAN, SONG GE, AKITO KAGA, AND NORIHIKO TOMOOKA 1 INTRODUCTION 219 2 PHYLOGENY. 220 3 ORYZA BIOGEOGRAPHY 225 REFERENCES 231 111.2 CBROMOSOME AND GENOME EVOLUTION IN RIEE 235 NORI KURATA 1 INTRODUCTION 235 2 CHROMOSOMES IN THE DIFFERENT GENOMES 235 3 CLASSIFICATION OF GENOMES BASED ON CHROMOSOMEPAIRING. 237 4 GENOME DUPLIEATION IN THE GENUS ORYZA 239 5 GENOME-WIDE EVOLUTION AMONG ORYZA SPECIES: GENOME SIZE, RETROTRANSPOSON AND CENTROMERE 240 6 REGIONAL GENOME EVOLUTION AMONG ORYZA SPECIES 241 XII CONTENTS 7 GENOME EVOLUTION IN THE POAEEAE FAMILY 242 REFERENEES 243 111.3 GENETIES OF SPECIATION IN RIEE 247 YOHEI KOIDE, KAZUMITSU ONISHI, AKIRA KANAZAWA, AND YOSHIO SANO 1 INTRODUETION 247 2 GENETIC MECHANISMS OF POST-MATING BARRIERS. 248 3 EVOLUTION OF REPRODUCTIVE ISOLATION. 254 4 CONCLUSIONS AND PERSPEETIVES 256 REFERENCES. 256 LILA GENETIE DIVERSITY IN WILD RELATIVES OF RIEE AND DOMESTIEATION EVENTS 261 HONG-WEI CAI, MASAHIRO AKIMOTO, AND HIROKO MORISHIMA 1 INTRODUCTION 261 2 GENETIC DIVERSITY OF AA-GENOME WILD TAXA. 262 3 DIFFERENTIATION WITHIN O. RUFIPOGON. 265 4 GENETICS OF DOMESTICATION 268 REFERENCES 273 111.5 RIEE RETROPOSON,P-SINE, AND ITS USE FOR CLASSIFIEATION AND IDENTIFIEATION OF ORYZA SPECIES. 277 HISAKO OHTSUBO, SUGURU TSUEHIMOTO, JIAN-HONG XU, CHAOYANG CHENG, MARCIA Y. KOUDO, NORI KURATA, AND EIICHI OHTSUBO 1 INTRODUCTION 277 2 P-SINE FAMILIES IN THE ORYZA GENUS 278 3 PHYLOGENETIC ANALYSIS OF ORYZA SPECIES BASED ON SINE INSERTION ANALYSIS. 280 4 "SINE CODE" IS AN EXCELLENT TOOL FOR IDENTIFIEATION OF ORYZA SPECIES. . 285 5 FINAL REMARKS 288 6 FUTURE PERSPEETIVES. 289 REFERENCES 289 SEETION IV IMPROVEMENT OF RIEE L"V:L DETEETION AND MOLEEULAR CLONING OF GENES UNDERLYING QUANTITATIVE PHENOTYPIC VARIATIONS IN RIEE. 295 TOSHIO YAMAMOTO AND MASAHIRO YANO 1 INTRODUCTION 295 2 MOLECULAR CLONING OF MAJOR QTLS WITH AGRONOMIE VALUES. 295 CONTENTS XIII 3 IDENTIFIEATION OF MAJOR QTLS WITH AGRONOMIE VALUE. 299 4 SYSTEMATIE GENETIE AND MOLEEULAR ANALYSIS AND UTILIZATION OF NATURAL VARIATIONS 302 5 FUTURE PROSPEETS 305 REFERENEES 306 IV.2 RIEE YIELDING AND PLANT HORMONES 309 MOTOYUKI ASHIKARI AND TOMOAKI SAKAMOTO 1 INTRODUETION 309 2 BREEDING OF SEMI-DWARF RIEE VARIETIES LED TO DRAMATIEALLY INEREASED GRAIN PRODUCTION 310 3 GIBBERELLINS REGULATE PLANT HEIGHT. 310 4 BRASSINOSTEROIDS CONTROL LEAF ANGLE AND BIOMASS PRODUETION 314 5 CYTOKININS REGULATE GRAIN NUMBER 315 6 FUTURE PERSPEETIVES: AEEUMULATION OF YIELDING-RELATED GENES FOR BREEDING. 316 REFERENEES 318 1"\:3 REGULATION OF IRON AND ZINE UPTAKE AND TRANSLOEATION IN RIEE '" . . . . 321 TAKANORI KOBAYASHI AND NAOKO K. NISHIZAWA 1 IRON (FE) AND ZINE (ZN) UPTAKE FROM THE RHIZOSPHERE MEDIATED BY MUGINEIE ACID FAMILY PHYTOSIDEROPHORES (MAS) 321 2 UPTAKE OF FE 2 + AND ZN 2 + IONS FROM THE RHIZOSPHERE 326 3 FE AND ZN TRANSLOEATION INSIDE THE PLANT BODY 327 4 REGULATION OF EXPRESSION OF FE UPTAKE-RELATED GENES 330 5 FUTURE PERSPEETIVES 332 REFERENEES 332 I\:4 ABIOTIE STRESS. 337 TAKAYUKI OHNISHI, MIKIO NAKAZONO, AND NOBUHIRO TSUTSUMI 1 INTRODUETION. 337 2 SIGNAL TRANSDUETION. 337 3 PARTICULAR STRESSES 345 4 FUTURE PERSPEETIVES 351 REFERENEES 352 XIV CONTENTS IV.5 HEALTH-PROMOTING TRANSGENIE RIEE: APPLIEATION OF RIEE SEEDS AS A DIRECT DELIVERY SYSTEM FOR BIOAETIVE PEPTIDES IN HUMAN HEALTH. 357 FUMIO TAKAIWA, LIJUN YANG, AND HIROSHI YASUDA 1 INTRODUCTION 357 2 PLANT PRODUCTION SYSTEM AS A BIOREACTOR FOR FOREIGN RECOMBINANT PROTEINS 358 3 CHARACTERISTICS OF THE RICE SEED PRODUCTION SYSTEM AS A BIOREACTOR 358 4 PRODUCTION TOO1S REQUIRED FOR EXPRESSION OF RECOMBINANT PROTEINS 01'PEPTIDES IN RICE SEED. 359 5 CREATION OF FUNCTIONAL FOODS THAT CONTRIBUTE TO HUMAN HEALTH 363 REFERENCES 371 INDEX. 375
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author2	Hirano, Hiroyuki
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author2_variant	h h hh
author_facet	Hirano, Hiroyuki
building	Verbundindex
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callnumber-first	S - Agriculture
callnumber-label	SB191
callnumber-raw	SB191.R5
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callnumber-subject	SB - Plant Culture
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dewey-full	633.18233
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dewey-ones	633 - Field and plantation crops
dewey-raw	633.18233
dewey-search	633.18233
dewey-sort	3633.18233
dewey-tens	630 - Agriculture and related technologies
discipline	Biologie Agrarwissenschaft Chemie-Ingenieurwesen Agrar-/Forst-/Ernährungs-/Haushaltswissenschaft / Gartenbau Biotechnologie Pflanzenbau
discipline_str_mv	Biologie Agrarwissenschaft Chemie-Ingenieurwesen Agrar-/Forst-/Ernährungs-/Haushaltswissenschaft / Gartenbau Biotechnologie Pflanzenbau
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isbn	9783540742487 3540742484
language	English
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physical	XXI, 381 S. 68 schw.-w. Ill., 8 farb. Ill., 24 schw.-w. Tab., 25 schw.-w. Fotos, 8 farb. Fotos, 43 schw.-w. graph. Darst. 235 mm x 155 mm
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publisher	Springer Berlin
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spelling	Rice biology in the genomics era Hiro-Yuki Hirano ... (eds.) Berlin [u.a.] Springer Berlin 2008 XXI, 381 S. 68 schw.-w. Ill., 8 farb. Ill., 24 schw.-w. Tab., 25 schw.-w. Fotos, 8 farb. Fotos, 43 schw.-w. graph. Darst. 235 mm x 155 mm txt rdacontent n rdamedia nc rdacarrier Biotechnology in Agriculture and Forestry 62 Crop improvement Rice Biotechnology Rice Molecular genetics Gentechnologie (DE-588)4071722-7 gnd rswk-swf Reiszüchtung (DE-588)4177624-0 gnd rswk-swf Reis (DE-588)4049271-0 gnd rswk-swf Transgene Pflanzen (DE-588)4311513-5 gnd rswk-swf Molekularbiologie (DE-588)4039983-7 gnd rswk-swf Genanalyse (DE-588)4200230-8 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Reis (DE-588)4049271-0 s Genanalyse (DE-588)4200230-8 s DE-604 Reiszüchtung (DE-588)4177624-0 s Gentechnologie (DE-588)4071722-7 s Molekularbiologie (DE-588)4039983-7 s Transgene Pflanzen (DE-588)4311513-5 s b DE-604 Hirano, Hiroyuki edt Biotechnology in Agriculture and Forestry 62 (DE-604)BV035362096 62 OEBV Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=016316411&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis
spellingShingle	Rice biology in the genomics era Biotechnology in Agriculture and Forestry Crop improvement Rice Biotechnology Rice Molecular genetics Gentechnologie (DE-588)4071722-7 gnd Reiszüchtung (DE-588)4177624-0 gnd Reis (DE-588)4049271-0 gnd Transgene Pflanzen (DE-588)4311513-5 gnd Molekularbiologie (DE-588)4039983-7 gnd Genanalyse (DE-588)4200230-8 gnd
subject_GND	(DE-588)4071722-7 (DE-588)4177624-0 (DE-588)4049271-0 (DE-588)4311513-5 (DE-588)4039983-7 (DE-588)4200230-8 (DE-588)4143413-4
title	Rice biology in the genomics era
title_auth	Rice biology in the genomics era
title_exact_search	Rice biology in the genomics era
title_exact_search_txtP	Rice biology in the genomics era
title_full	Rice biology in the genomics era Hiro-Yuki Hirano ... (eds.)
title_fullStr	Rice biology in the genomics era Hiro-Yuki Hirano ... (eds.)
title_full_unstemmed	Rice biology in the genomics era Hiro-Yuki Hirano ... (eds.)
title_short	Rice biology in the genomics era
title_sort	rice biology in the genomics era
topic	Crop improvement Rice Biotechnology Rice Molecular genetics Gentechnologie (DE-588)4071722-7 gnd Reiszüchtung (DE-588)4177624-0 gnd Reis (DE-588)4049271-0 gnd Transgene Pflanzen (DE-588)4311513-5 gnd Molekularbiologie (DE-588)4039983-7 gnd Genanalyse (DE-588)4200230-8 gnd
topic_facet	Crop improvement Rice Biotechnology Rice Molecular genetics Gentechnologie Reiszüchtung Reis Transgene Pflanzen Molekularbiologie Genanalyse Aufsatzsammlung
url	http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=016316411&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA
volume_link	(DE-604)BV035362096
work_keys_str_mv	AT hiranohiroyuki ricebiologyinthegenomicsera

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