Gene function analysis:
Saved in:
| Format: | Book |
|---|---|
| Language: | English |
| Published: |
Totowa, NJ
Humana Press
2007
|
| Series: | Methods in molecular biology
408 |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Item Description: | Literaturangaben |
| Physical Description: | XIV, 337 S. Ill., graph. Darst. |
| ISBN: | 9781588297341 9781597455473 |
Staff View
MARC
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| 245 | 1 | 0 | |a Gene function analysis |c ed. by Michael F. Ochs |
| 264 | 1 | |a Totowa, NJ |b Humana Press |c 2007 | |
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Record in the Search Index
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| adam_text | Contents
Preface vii
Contributors xiii
Part I Computational Methods I
1 Gene Function Inference From Gene Expression of Deletion Mutants
Ghislain Bidaut /
2 Association Analysis for Large Scale Gene Set Data
Stefan A. Kirov, Bing Zhang, and /ay R. Snoddy 19
3 Estimating Gene Function With Least Squares Nonnegative
Matrix Factorization
Guoli Wang and Michael F. Ochs 35
4 From Promoter Analysis to Transcriptional Regulatory
Network Prediction Using PAINT
Gregory E. Gonye, Praveen Chakravarthula,
James S. Schwaber, and Rajanikanth Vadigepalli 49
5 Prediction of Intrinsic Disorder and Its Use in Functional Proteomics
Vladimir N. Uversky, Predrag Radivojac, Lilia M. lakoucheva,
Zoran Obradovic, and A. Keith Dunker 69
Part II Computational Methods II
6 Sybil: Methods and Software for Multiple Genome Comparison
and Visualization
Jonathan Crabtree, Samuel V. Angiuoli, Jennifer R. Wortman,
and Owen R. White 93
7 Estimating Protein Function Using Protein Protein Relationships
Shailesh V. Date 109
8 Bioinformatics Tools for Modeling Transcription Factor Target Genes
and Epigenetic Changes
Ramana V. Davuluri 129
9 Mining Biomedical Data Using MetaMap Transfer (MMTx)
and the Unified Medical Language System (UMLS)
John D. Osborne, Simon Lin, Lihua (Julie) Zhu,
and Warren A. Kibbe 153
10 Statistical Methods for Identifying Differentially Expressed
Gene Combinations
Yen Yi Ho, Leslie Cope, Marcel Dettling,
and Giovanni Parmigiani 171
xi
xii Contents
Part 111 Experimental Methods
11 Gene Function Analysis Using the Chicken B Cell Line DT40
Randolph B. Caldwell, Petra Fiedler, Ulrike Schoetz,
and Jean Marie Buerstedde 193
12 Design and Application of a shRNA Based Gene
Replacement Retrovirus
Rugang Zhang, Peter D. Adams, and Xiao fen Ye 211
13 Construction of Simple and Efficient DNA Vector Based
Short Hairpin RNA Expression Systems for Specific Gene
Silencing in Mammalian Cells
Tsung Lin Cheng and Wen Tsan Chang 223
14 Selection of Recombinant Antibodies From Antibody Gene Libraries
Michael Hust, Stefan Diibel, and Thomas Schirrmann 243
15 A Bacterial/Yeast Merged Two Hybrid System: Protocol
for Yeast Screening With Single or Parallel Baits
Nadezhda Y. Tikhmyanova, Eugene A. Izumchenko,
llya G. Serebriiskii, and Erica A. Golemis 257
16 A Bacterial/Yeast Merged Two Hybrid System: Protocol
for Bacterial Screening
llya G. Serebriiskii, Nadia Milech, and Erica A. Golemis 291
17 Engineering Cys2His2 Zinc Finger Domains Using a Bacterial
Cell Based Two Hybrid Selection System
Stacey Thibodeau Beganny and J. Keith Joung 317
Index 335
|
| adam_txt |
Contents
Preface vii
Contributors xiii
Part I Computational Methods I
1 Gene Function Inference From Gene Expression of Deletion Mutants
Ghislain Bidaut /
2 Association Analysis for Large Scale Gene Set Data
Stefan A. Kirov, Bing Zhang, and /ay R. Snoddy 19
3 Estimating Gene Function With Least Squares Nonnegative
Matrix Factorization
Guoli Wang and Michael F. Ochs 35
4 From Promoter Analysis to Transcriptional Regulatory
Network Prediction Using PAINT
Gregory E. Gonye, Praveen Chakravarthula,
James S. Schwaber, and Rajanikanth Vadigepalli 49
5 Prediction of Intrinsic Disorder and Its Use in Functional Proteomics
Vladimir N. Uversky, Predrag Radivojac, Lilia M. lakoucheva,
Zoran Obradovic, and A. Keith Dunker 69
Part II Computational Methods II
6 Sybil: Methods and Software for Multiple Genome Comparison
and Visualization
Jonathan Crabtree, Samuel V. Angiuoli, Jennifer R. Wortman,
and Owen R. White 93
7 Estimating Protein Function Using Protein Protein Relationships
Shailesh V. Date 109
8 Bioinformatics Tools for Modeling Transcription Factor Target Genes
and Epigenetic Changes
Ramana V. Davuluri 129
9 Mining Biomedical Data Using MetaMap Transfer (MMTx)
and the Unified Medical Language System (UMLS)
John D. Osborne, Simon Lin, Lihua (Julie) Zhu,
and Warren A. Kibbe 153
10 Statistical Methods for Identifying Differentially Expressed
Gene Combinations
Yen Yi Ho, Leslie Cope, Marcel Dettling,
and Giovanni Parmigiani 171
xi
xii Contents
Part 111 Experimental Methods
11 Gene Function Analysis Using the Chicken B Cell Line DT40
Randolph B. Caldwell, Petra Fiedler, Ulrike Schoetz,
and Jean Marie Buerstedde 193
12 Design and Application of a shRNA Based Gene
Replacement Retrovirus
Rugang Zhang, Peter D. Adams, and Xiao fen Ye 211
13 Construction of Simple and Efficient DNA Vector Based
Short Hairpin RNA Expression Systems for Specific Gene
Silencing in Mammalian Cells
Tsung Lin Cheng and Wen Tsan Chang 223
14 Selection of Recombinant Antibodies From Antibody Gene Libraries
Michael Hust, Stefan Diibel, and Thomas Schirrmann 243
15 A Bacterial/Yeast Merged Two Hybrid System: Protocol
for Yeast Screening With Single or Parallel Baits
Nadezhda Y. Tikhmyanova, Eugene A. Izumchenko,
llya G. Serebriiskii, and Erica A. Golemis 257
16 A Bacterial/Yeast Merged Two Hybrid System: Protocol
for Bacterial Screening
llya G. Serebriiskii, Nadia Milech, and Erica A. Golemis 291
17 Engineering Cys2His2 Zinc Finger Domains Using a Bacterial
Cell Based Two Hybrid Selection System
Stacey Thibodeau Beganny and J. Keith Joung 317
Index 335 |
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| spelling | Gene function analysis ed. by Michael F. Ochs Totowa, NJ Humana Press 2007 XIV, 337 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Methods in molecular biology 408 Literaturangaben Computational Biology methods Laboratory Manuals Databases, Genetic Laboratory Manuals Genetic Techniques Laboratory Manuals Genetics Technique Genomics methods Laboratory Manuals Genanalyse (DE-588)4200230-8 gnd rswk-swf Labortechnik (DE-588)4123602-6 gnd rswk-swf Methode (DE-588)4038971-6 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Genanalyse (DE-588)4200230-8 s Methode (DE-588)4038971-6 s Labortechnik (DE-588)4123602-6 s 1\p DE-604 Ochs, Michael F. Sonstige oth Methods in molecular biology 408 (DE-604)BV035362695 408 HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=016224916&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis 1\p cgwrk 20201028 DE-101 https://d-nb.info/provenance/plan#cgwrk |
| spellingShingle | Gene function analysis Methods in molecular biology Computational Biology methods Laboratory Manuals Databases, Genetic Laboratory Manuals Genetic Techniques Laboratory Manuals Genetics Technique Genomics methods Laboratory Manuals Genanalyse (DE-588)4200230-8 gnd Labortechnik (DE-588)4123602-6 gnd Methode (DE-588)4038971-6 gnd |
| subject_GND | (DE-588)4200230-8 (DE-588)4123602-6 (DE-588)4038971-6 (DE-588)4143413-4 |
| title | Gene function analysis |
| title_auth | Gene function analysis |
| title_exact_search | Gene function analysis |
| title_exact_search_txtP | Gene function analysis |
| title_full | Gene function analysis ed. by Michael F. Ochs |
| title_fullStr | Gene function analysis ed. by Michael F. Ochs |
| title_full_unstemmed | Gene function analysis ed. by Michael F. Ochs |
| title_short | Gene function analysis |
| title_sort | gene function analysis |
| topic | Computational Biology methods Laboratory Manuals Databases, Genetic Laboratory Manuals Genetic Techniques Laboratory Manuals Genetics Technique Genomics methods Laboratory Manuals Genanalyse (DE-588)4200230-8 gnd Labortechnik (DE-588)4123602-6 gnd Methode (DE-588)4038971-6 gnd |
| topic_facet | Computational Biology methods Laboratory Manuals Databases, Genetic Laboratory Manuals Genetic Techniques Laboratory Manuals Genetics Technique Genomics methods Laboratory Manuals Genanalyse Labortechnik Methode Aufsatzsammlung |
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