Microarrays: 1 Synthesis methods
Saved in:
| Format: | Book |
|---|---|
| Language: | English |
| Published: |
Totowa, NJ
Humana Press
2007
|
| Edition: | 2. ed. |
| Series: | Methods in molecular biology
381 |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis Klappentext |
| Physical Description: | XIX, 448 S. Ill., graph. Darst. |
| ISBN: | 9781588295897 1588295893 |
Staff View
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| adam_text | Contents
Dedication
........................................................................................................
v
Preface
...........................................................................................................
vii
Contents of the Companion Volume
.............................................................xiii
Contributors
..................................................................................................xvii
1
Introduction: Array Technology
—
An Overview
Hartmut Seliger..................................................................................... 7
2
Current Microarray Surface Chemistries
David W. Grainger, Charles H. Greet, Ping Gong,
and Michael J. Lochhead
................................................................37
3
Nonfouling Surfaces: A Review of Principles and Applications
for Microarray Capture Assay Designs
Ping Gong and David W. Grainger
.....................................................59
4
Optimization of Oligonucleotide
DNA
Microarray
Martin Dufva and
Claus
В.
V. Christensen
.........................................93
5
Detection of
DNA
Copy Number Alterations in Complex Genomes
Using Array Comparative Genomic Hybridization
Wei-Wen
Cai
..................................................................................... 705
6
Evaluating the Quality of Data From Microarray Measurements
Lili
Wang, A. K.
Caígalas,
M.
В.
Satteríield,
M. Salit,
Y.
Zong,
and I. Noble
...................................................................727
7
Construction of Oligonucleotide Microarrays
(Biochip)
Using Heterobifunctional Reagents
lyoti Choithani, Bhashyam Vaijayanthi, Pradeep Kumar,
and Kailash Chand Gupta
.............................................................133
8
Choice of Polymer Matrix, Its Functionalization and Estimation
of Functional Group Density for Preparation of
Biochips
Shweta Mahajan, Bhashyam Vaijayanthi
,
Gopal Rembhotkar,
Kailash Chand Gupta, and Pradeep Kumar
..................................765
9
Methods in High-Resolution, Array-Based Comparative
Genomic Hybridization
Mark R. McCormick, Rebecca R. Selzer,
and Todd A. Richmond
................................................................. 189
xi
x¡¡
Contents
10 Design and
Fabrication
of Spotted Long Oligonucleotide
Microarrays for Gene Expression Analysis
Cheng-Chung
Chou
and Konan Peck
................................................213
11
Construction of In Situ Oligonucleotide Arrays on Plastic
fang B.
Rampai,
Peter J. Coassin, and Robert
S. Maison
..................227
12
Detecting
Ligated
Fragments on Oligonucleotide Microarrays:
Optimizing Chip Design, Array Multiplex Ligation-Dependent
Probe Amplification Modification, and Hybridization Parameters
Ian R. Berry, Carol A. Deianey, and Graham R. Taylor
...................247
13
Detection of Single-Nucleotide Polymorphisms in Cancer-Related
Genes by Minisequencing on a Microelectronic
DNA Chip
Alexandre Ho-Pun-Cheung,
Hafid Abaibou,
Philippe Cleuziat, and
Evelyne Lopez-Crapez
..............................267
14
Hybridization Analysis Using Oligonucleotide Probe Arrays
Roberts. Matson and Jang
В
. Rampal..............................................279
15
In Situ Synthesis of
Peptide
Microarrays
Using Ink-Jet Microdispensing
Bogdan
V. Antohe and Patrick W. Cootey
.......................................299
16
Intein-Mediated
Peptide
Arrays for Epitope Mapping
and Kinase/Phosphatase Assays
Ming-Qun Xu,
Inca
Ghosh, Samvel Kochinyan, and Luo Sun
..........313
17
Printing Low Density Protein Arrays in
Microplates
Robert S. Matson, Raymond
С
Milton, Michael C. Cress,
Tom S. Chan, and fang
В
. Rampal................................................339
18
Forward-Phase and Reverse-Phase Protein Microarray
Yaping
Zong, Shanshan
Zhang, Huang-Tsu Chen,
Yunfei
Zong,
and Yaxian Shi
........................................................363
19
Cell Microarray for Functional Exploration of Genomes
David
Castel,
Marie-Anne
Debily,
Amandine Pitaval,
and
Xavier Gidrol
.........................................................................375
20
Quantification of Mixed-Phase Hybridization on Polymer
Microparticles by Europium (111) Ion Fluorescence
Kaisa
Ketomäki
and Hani
Lönnberg
.................................................385
21
Measurement of the Sugar-Binding Specificity of Lectins Using
Multiplexed Bead-Based Suspension Arrays
Kazuo Yamamoto, Fumiko Yasukawa, and Seiichiro
Ito
..................401
22
Nanotechnology: Moving From Microarrays Toward Nanoarrays
Hua
Chen and
Jun Li
.....................................................................
4ft
Index
............................................................................................................437
Microarrays,
Volumes
1
and
2,
present
information for designing and fabricating arrays and binding studies
with biological analytes, while providing the reader with a broad range of microarray technology tools and their
potential applications. The first volume deals with methods and protocols for the preparation of microarrays. The
second volume details applications and data analysis, which is important in analyzing the enormous amount of data
coming out of microarray experiments.
Among thetopics discussed in Volume
1 :
Synthesis Methods, are matrices in the synthesis of microarrays, array
optimization processes, array-based comparative genomic hybridization, 60-mer oligonucleotide probes,
bifunctionai reagents NTMTA and NTPAC, and high-density arrays using digital microarray synthesis platforms.
Other topics include multiplex ligation-dependent probe amplification (MLPA), hybridization conditions form situ-
synthesized oligonucleolide arrays,
peptide
arrays, high-density replication tools (HDRT), protocols for the quan¬
tification of oligo hybridization, jjlyco-bead arrays, and an investigation into the emerging nanotechnology.
Volume
2:
Applications and Data Analysis includes insight into processes and protocols for high-quality glass-
based microarrays used to study nonmammalian vertebrate systems. It describes applications in
DNA, peptide,
antibody, and carbohydrate microarraying, oligonucleotide microarrays generated from hydrolysis PCR probe
sequences, microarray platforms in clinical practice, and screening of cDNA libraries on glass slide microarrays.
Authors in this volume also discuss
цРагагІо
biochip
for nucleic acid and protein analysis, volumetric mass
spectrometry protein arrays, protocols for predicting
DNA
duplex stability on oligonucleotide arrays, and integrated
analysis of microarray results.
Microarrays, Volumes
1
and
2,
provide ample information to all levels of scientist, from the novice to those
intimately familiar with array technology.
FfATI RES
Meticulous exploration into state-of-the-art methods and protocols for microarray technology
Authors examine bioinformatics, an important aspect in analyzing large amounts of data that emerge
during experiments
Introduction: Amy Technology—An Overview. Current Microarray
Surface Chemistries. Nonfouling Surfaces: A Review
oí
Principles and
Applications for M/crcwray Capture Assay Designs. Optimization of
Oligonucleotide
DNA
Microarray. Detection of
DNA
Copy Number
Alterations in Complex Genomes Using Array Comparative Cenomic
Hybridization. Evaluating the Quality of Data From Microarray
Measurements. Construction of Oligonucleotide Microarrays (Bio-
chip) Using Heterofaifunctional Reagents. Choice of Polymer Matrix,
Its Functionalization and Estimation of Functional Group Density for
Preparation of
Biochips.
Methods in High-Resolution, Array-Based
Comparative Genomic Hybridization. Design and Fabrication of
Spotted Long Oligonucleotide Microarrays for Gene Expression
Analysis. Construction of In Situ Oligonucleotide Arrays on Plastic.
Detecting
Ligated
Fragments on Oligonucleotide Microarrays:
Optimizing Chip Design, Array
Multiplen
Ligation-Dependent Probe
Ampli/kation
Modification, and Hybridization Parameters. Detection
of Single-Nucleotide Polymorphisms in Cancer-Related Genes by
Minisequencing on a Microelectronic
DNA Chip.
Hybridization
Analysis Using Oligonucleotide Probe Arrays. In Situ Synthesis of
Peptide
Microarrays Using Ink-Jet Microdispensing. Intein-Mediated
Peptide
Arrays for Epitope Mapping and Kinase/Phosphatase Assays.
Printing Low Density Protein Arrays in
Microplate.
Forward-Phase
and Reverse-Phase Protein Microarray. Cell Microarray for Function¬
al Exploration of Genomes. Quantification of Mixed-Phase Hybrid¬
ization on Polymer Microparticles by Europium (111) Ion Fluorescence.
Measurement of the Sugar-Binding Specificity of Lectins Using
Multiplexed Bead-Based Suspension Arrays. Nanotechnology:
Moving From Microarrays Toward Nanoarrays. Index.
|
| adam_txt |
Contents
Dedication
.
v
Preface
.
vii
Contents of the Companion Volume
.xiii
Contributors
.xvii
1
Introduction: Array Technology
—
An Overview
Hartmut Seliger. 7
2
Current Microarray Surface Chemistries
David W. Grainger, Charles H. Greet, Ping Gong,
and Michael J. Lochhead
.37
3
Nonfouling Surfaces: A Review of Principles and Applications
for Microarray Capture Assay Designs
Ping Gong and David W. Grainger
.59
4
Optimization of Oligonucleotide
DNA
Microarray
Martin Dufva and
Claus
В.
V. Christensen
.93
5
Detection of
DNA
Copy Number Alterations in Complex Genomes
Using Array Comparative Genomic Hybridization
Wei-Wen
Cai
. 705
6
Evaluating the Quality of Data From Microarray Measurements
Lili
Wang, A. K.
Caígalas,
M.
В.
Satteríield,
M. Salit,
Y.
Zong,
and I. Noble
.727
7
Construction of Oligonucleotide Microarrays
(Biochip)
Using Heterobifunctional Reagents
lyoti Choithani, Bhashyam Vaijayanthi, Pradeep Kumar,
and Kailash Chand Gupta
.133
8
Choice of Polymer Matrix, Its Functionalization and Estimation
of Functional Group Density for Preparation of
Biochips
Shweta Mahajan, Bhashyam Vaijayanthi
,
Gopal Rembhotkar,
Kailash Chand Gupta, and Pradeep Kumar
.765
9
Methods in High-Resolution, Array-Based Comparative
Genomic Hybridization
Mark R. McCormick, Rebecca R. Selzer,
and Todd A. Richmond
. 189
xi
x¡¡
Contents
10 Design and
Fabrication
of Spotted Long Oligonucleotide
Microarrays for Gene Expression Analysis
Cheng-Chung
Chou
and Konan Peck
.213
11
Construction of In Situ Oligonucleotide Arrays on Plastic
fang B.
Rampai,
Peter J. Coassin, and Robert
S. Maison
.227
12
Detecting
Ligated
Fragments on Oligonucleotide Microarrays:
Optimizing Chip Design, Array Multiplex Ligation-Dependent
Probe Amplification Modification, and Hybridization Parameters
Ian R. Berry, Carol A. Deianey, and Graham R. Taylor
.247
13
Detection of Single-Nucleotide Polymorphisms in Cancer-Related
Genes by Minisequencing on a Microelectronic
DNA Chip
Alexandre Ho-Pun-Cheung,
Hafid Abaibou,
Philippe Cleuziat, and
Evelyne Lopez-Crapez
.267
14
Hybridization Analysis Using Oligonucleotide Probe Arrays
Roberts. Matson and Jang
В
'. Rampal.279
15
In Situ Synthesis of
Peptide
Microarrays
Using Ink-Jet Microdispensing
Bogdan
V. Antohe and Patrick W. Cootey
.299
16
Intein-Mediated
Peptide
Arrays for Epitope Mapping
and Kinase/Phosphatase Assays
Ming-Qun Xu,
Inca
Ghosh, Samvel Kochinyan, and Luo Sun
.313
17
Printing Low Density Protein Arrays in
Microplates
Robert S. Matson, Raymond
С
Milton, Michael C. Cress,
Tom S. Chan, and fang
В
. Rampal.339
18
Forward-Phase and Reverse-Phase Protein Microarray
Yaping
Zong, Shanshan
Zhang, Huang-Tsu Chen,
Yunfei
Zong,
and Yaxian Shi
.363
19
Cell Microarray for Functional Exploration of Genomes
David
Castel,
Marie-Anne
Debily,
Amandine Pitaval,
and
Xavier Gidrol
.375
20
Quantification of Mixed-Phase Hybridization on Polymer
Microparticles by Europium (111) Ion Fluorescence
Kaisa
Ketomäki
and Hani
Lönnberg
.385
21
Measurement of the Sugar-Binding Specificity of Lectins Using
Multiplexed Bead-Based Suspension Arrays
Kazuo Yamamoto, Fumiko Yasukawa, and Seiichiro
Ito
.401
22
Nanotechnology: Moving From Microarrays Toward Nanoarrays
Hua
Chen and
Jun Li
.
4ft
Index
.437
Microarrays,
Volumes
1
and
2,
present
information for designing and fabricating arrays and binding studies
with biological analytes, while providing the reader with a broad range of microarray technology tools and their
potential applications. The first volume deals with methods and protocols for the preparation of microarrays. The
second volume details applications and data analysis, which is important in analyzing the enormous amount of data
coming out of microarray experiments.
Among thetopics discussed in Volume
1 :
Synthesis Methods, are matrices in the synthesis of microarrays, array
optimization processes, array-based comparative genomic hybridization, 60-mer oligonucleotide probes,
bifunctionai reagents NTMTA and NTPAC, and high-density arrays using digital microarray synthesis platforms.
Other topics include multiplex ligation-dependent probe amplification (MLPA), hybridization conditions form situ-
synthesized oligonucleolide arrays,
peptide
arrays, high-density replication tools (HDRT), protocols for the quan¬
tification of oligo hybridization, jjlyco-bead arrays, and an investigation into the emerging nanotechnology.
Volume
2:
Applications and Data Analysis includes insight into processes and protocols for high-quality glass-
based microarrays used to study nonmammalian vertebrate systems. It describes applications in
DNA, peptide,
antibody, and carbohydrate microarraying, oligonucleotide microarrays generated from hydrolysis PCR probe
sequences, microarray platforms in clinical practice, and screening of cDNA libraries on glass slide microarrays.
Authors in this volume also discuss
цРагагІо'"
biochip
for nucleic acid and protein analysis, volumetric mass
spectrometry protein arrays, protocols for predicting
DNA
duplex stability on oligonucleotide arrays, and integrated
analysis of microarray results.
Microarrays, Volumes
1
and
2,
provide ample information to all levels of scientist, from the novice to those
intimately familiar with array technology.
FfATI RES
Meticulous exploration into state-of-the-art methods and protocols for microarray technology
Authors examine bioinformatics, an important aspect in analyzing large amounts of data that emerge
during experiments
Introduction: Amy Technology—An Overview. Current Microarray
Surface Chemistries. Nonfouling Surfaces: A Review
oí
Principles and
Applications for M/crcwray Capture Assay Designs. Optimization of
Oligonucleotide
DNA
Microarray. Detection of
DNA
Copy Number
Alterations in Complex Genomes Using Array Comparative Cenomic
Hybridization. Evaluating the Quality of Data From Microarray
Measurements. Construction of Oligonucleotide Microarrays (Bio-
chip) Using Heterofaifunctional Reagents. Choice of Polymer Matrix,
Its Functionalization and Estimation of Functional Group Density for
Preparation of
Biochips.
Methods in High-Resolution, Array-Based
Comparative Genomic Hybridization. Design and Fabrication of
Spotted Long Oligonucleotide Microarrays for Gene Expression
Analysis. Construction of In Situ Oligonucleotide Arrays on Plastic.
Detecting
Ligated
Fragments on Oligonucleotide Microarrays:
Optimizing Chip Design, Array
Multiplen
Ligation-Dependent Probe
Ampli/kation
Modification, and Hybridization Parameters. Detection
of Single-Nucleotide Polymorphisms in Cancer-Related Genes by
Minisequencing on a Microelectronic
DNA Chip.
Hybridization
Analysis Using Oligonucleotide Probe Arrays. In Situ Synthesis of
Peptide
Microarrays Using Ink-Jet Microdispensing. Intein-Mediated
Peptide
Arrays for Epitope Mapping and Kinase/Phosphatase Assays.
Printing Low Density Protein Arrays in
Microplate.
Forward-Phase
and Reverse-Phase Protein Microarray. Cell Microarray for Function¬
al Exploration of Genomes. Quantification of Mixed-Phase Hybrid¬
ization on Polymer Microparticles by Europium (111) Ion Fluorescence.
Measurement of the Sugar-Binding Specificity of Lectins Using
Multiplexed Bead-Based Suspension Arrays. Nanotechnology:
Moving From Microarrays Toward Nanoarrays. Index. |
| any_adam_object | 1 |
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| bvnumber | BV022282033 |
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| discipline | Biologie |
| discipline_str_mv | Biologie |
| edition | 2. ed. |
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| id | DE-604.BV022282033 |
| illustrated | Illustrated |
| index_date | 2024-07-02T16:49:41Z |
| indexdate | 2024-07-09T20:54:04Z |
| institution | BVB |
| isbn | 9781588295897 1588295893 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-015492325 |
| oclc_num | 613119332 |
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| owner_facet | DE-355 DE-BY-UBR DE-M49 DE-BY-TUM |
| physical | XIX, 448 S. Ill., graph. Darst. |
| publishDate | 2007 |
| publishDateSearch | 2007 |
| publishDateSort | 2007 |
| publisher | Humana Press |
| record_format | marc |
| series | Methods in molecular biology |
| series2 | Methods in molecular biology |
| spelling | Microarrays 1 Synthesis methods ed. by Jang G. Rampal 2. ed. Totowa, NJ Humana Press 2007 XIX, 448 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Methods in molecular biology 381 Methods in molecular biology ... Molekularbiologie (DE-588)4039983-7 gnd rswk-swf Microarray (DE-588)4544227-7 gnd rswk-swf Microarray (DE-588)4544227-7 s Molekularbiologie (DE-588)4039983-7 s DE-604 Rampal, Jang B. Sonstige oth (DE-604)BV022282008 1 Methods in molecular biology 381 (DE-604)BV035362695 381 Digitalisierung UB Regensburg application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=015492325&sequence=000003&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis Digitalisierung UB Regensburg application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=015492325&sequence=000004&line_number=0002&func_code=DB_RECORDS&service_type=MEDIA Klappentext |
| spellingShingle | Microarrays Methods in molecular biology Molekularbiologie (DE-588)4039983-7 gnd Microarray (DE-588)4544227-7 gnd |
| subject_GND | (DE-588)4039983-7 (DE-588)4544227-7 |
| title | Microarrays |
| title_auth | Microarrays |
| title_exact_search | Microarrays |
| title_exact_search_txtP | Microarrays |
| title_full | Microarrays 1 Synthesis methods ed. by Jang G. Rampal |
| title_fullStr | Microarrays 1 Synthesis methods ed. by Jang G. Rampal |
| title_full_unstemmed | Microarrays 1 Synthesis methods ed. by Jang G. Rampal |
| title_short | Microarrays |
| title_sort | microarrays synthesis methods |
| topic | Molekularbiologie (DE-588)4039983-7 gnd Microarray (DE-588)4544227-7 gnd |
| topic_facet | Molekularbiologie Microarray |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=015492325&sequence=000003&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=015492325&sequence=000004&line_number=0002&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV022282008 (DE-604)BV035362695 |
| work_keys_str_mv | AT rampaljangb microarrays1 |