Mass spectrometry data analysis in proteomics:
Saved in:
| Format: | Book |
|---|---|
| Language: | English |
| Published: |
Totowa, NJ
Humana Press
2007
|
| Series: | Methods in molecular biology
367 |
| Subjects: | |
| Online Access: | Table of contents Inhaltsverzeichnis |
| Item Description: | Includes bibliographical references and index |
| Physical Description: | X, 320 S. Ill., graph. Darst., Tab. |
| ISBN: | 158829563X 9781588295637 |
Staff View
MARC
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| 245 | 1 | 0 | |a Mass spectrometry data analysis in proteomics |c ed. by Rune Matthiesen |
| 264 | 1 | |a Totowa, NJ |b Humana Press |c 2007 | |
| 300 | |a X, 320 S. |b Ill., graph. Darst., Tab. | ||
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| 490 | 1 | |a Methods in molecular biology |v 367 | |
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| 650 | 4 | |a Proteomics |x methods | |
| 650 | 4 | |a Spectrum Analysis, Mass |x methods | |
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| adam_text | Contents
Preface v
Contributors ix
1 Introduction to Proteomics
Rune Matthiesen and Kudzai E. Mutenda 1
2 Extracting Monoisotopic Single Charge Peaks From Liquid
Chromatography Electrospray lonization Mass Spectrometry
Rune Matthiesen 37
3 Calibration of Matrix Assisted Laser Desorption/lonization
Time of Flight Peptide Mass Fingerprinting Spectra
Karin Hjern0 and Peter Hojrup 49
4 Protein Identification by Peptide Mass Fingerprinting
Karin Hjern0 61
5 Generating Unigene Collections of Expressed Sequence Tag
Sequences for Use in Mass Spectrometry Identification
Jeppe Emmersen 77
6 Protein Identification by Tandem Mass Spectrometry
and Sequence Database Searching
Alexey I. Nesvizhskii 87
7 Virtual Expert Mass Spectrometrist v3.0:
An Integrated Tool for Proteome Analysis
Rune Matthiesen 121
8 Quantitäten With Virtual Expert Mass Spectrometrist
Albrecht Gruhler and Rune Matthiesen 139
9 Sequence Handling by Sequence Analysis Toolbox v1.0
Christian Ravnsborg Ingrell, Rune Matthiesen,
and Ole Nerregaard Jensen 153
10 Interpretation of Collision Induced Fragmentation Tandem
Mass Spectra of Posttranslationally Modified Peptides
Jakob Bunkenborg and Rune Matthiesen 169
11 Retention Time Prediction and Protein Identification
Magnus Palmblad 195
vii
viii Contents
1 2 Quantitative Proteomics by Stable Isotope Labeling
and Mass Spectrometry
Sheng Pan and Ruedi Aebersold 209
1 3 Quantitative Proteomics for Two Dimensional Gels
Using Difference Gel Electrophoresis
David B. Friedman 219
14 Proteomic Data Exchange and Storage: Using Proteios
Per Gärdén and Rikard Aim 241
15 Proteomic Data Exchange and Storage:
The Need for Common Standards and Public Repositories
Sandra Orchard, Philip Jones, Chris Taylor, Weimin Zhu,
Randall K. Julian, Jr., Henning Hermjakob,
and Rolf Apweiler 261
16 Organization of Proteomics Data With YassDB
Allan L. Thomsen, Kris Laukens, Rune Matthiesen,
and Ole Nerregaard Jensen 271
1 7 Analysis of Carbohydrates by Mass Spectrometry
Kudzai E. Mutenda and Rune Matthiesen 289
18 Useful Mass Spectrometry Programs Freely Available
on the Internet
Rune Matthiesen 303
Appendix 307
Index 313
|
| adam_txt |
Contents
Preface v
Contributors ix
1 Introduction to Proteomics
Rune Matthiesen and Kudzai E. Mutenda 1
2 Extracting Monoisotopic Single Charge Peaks From Liquid
Chromatography Electrospray lonization Mass Spectrometry
Rune Matthiesen 37
3 Calibration of Matrix Assisted Laser Desorption/lonization
Time of Flight Peptide Mass Fingerprinting Spectra
Karin Hjern0 and Peter Hojrup 49
4 Protein Identification by Peptide Mass Fingerprinting
Karin Hjern0 61
5 Generating Unigene Collections of Expressed Sequence Tag
Sequences for Use in Mass Spectrometry Identification
Jeppe Emmersen 77
6 Protein Identification by Tandem Mass Spectrometry
and Sequence Database Searching
Alexey I. Nesvizhskii 87
7 Virtual Expert Mass Spectrometrist v3.0:
An Integrated Tool for Proteome Analysis
Rune Matthiesen 121
8 Quantitäten With Virtual Expert Mass Spectrometrist
Albrecht Gruhler and Rune Matthiesen 139
9 Sequence Handling by Sequence Analysis Toolbox v1.0
Christian Ravnsborg Ingrell, Rune Matthiesen,
and Ole Nerregaard Jensen 153
10 Interpretation of Collision Induced Fragmentation Tandem
Mass Spectra of Posttranslationally Modified Peptides
Jakob Bunkenborg and Rune Matthiesen 169
11 Retention Time Prediction and Protein Identification
Magnus Palmblad 195
vii
viii Contents
1 2 Quantitative Proteomics by Stable Isotope Labeling
and Mass Spectrometry
Sheng Pan and Ruedi Aebersold 209
1 3 Quantitative Proteomics for Two Dimensional Gels
Using Difference Gel Electrophoresis
David B. Friedman 219
14 Proteomic Data Exchange and Storage: Using Proteios
Per Gärdén and Rikard Aim 241
15 Proteomic Data Exchange and Storage:
The Need for Common Standards and Public Repositories
Sandra Orchard, Philip Jones, Chris Taylor, Weimin Zhu,
Randall K. Julian, Jr., Henning Hermjakob,
and Rolf Apweiler 261
16 Organization of Proteomics Data With YassDB
Allan L. Thomsen, Kris Laukens, Rune Matthiesen,
and Ole Nerregaard Jensen 271
1 7 Analysis of Carbohydrates by Mass Spectrometry
Kudzai E. Mutenda and Rune Matthiesen 289
18 Useful Mass Spectrometry Programs Freely Available
on the Internet
Rune Matthiesen 303
Appendix 307
Index 313 |
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| spelling | Mass spectrometry data analysis in proteomics ed. by Rune Matthiesen Totowa, NJ Humana Press 2007 X, 320 S. Ill., graph. Darst., Tab. txt rdacontent n rdamedia nc rdacarrier Methods in molecular biology 367 Includes bibliographical references and index Proteomics Methodology Mass spectrometry Proteomics methods Spectrum Analysis, Mass methods Expressed Sequence Tags Proteomanalyse (DE-588)4596545-6 gnd rswk-swf Massenspektrometrie (DE-588)4037882-2 gnd rswk-swf Datenanalyse (DE-588)4123037-1 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Proteomanalyse (DE-588)4596545-6 s Massenspektrometrie (DE-588)4037882-2 s Datenanalyse (DE-588)4123037-1 s b DE-604 Matthiesen, Rune Sonstige oth Methods in molecular biology 367 (DE-604)BV035362695 367 http://www.loc.gov/catdir/toc/ecip0613/2006015500.html Table of contents HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=014918945&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Mass spectrometry data analysis in proteomics Methods in molecular biology Proteomics Methodology Mass spectrometry Proteomics methods Spectrum Analysis, Mass methods Expressed Sequence Tags Proteomanalyse (DE-588)4596545-6 gnd Massenspektrometrie (DE-588)4037882-2 gnd Datenanalyse (DE-588)4123037-1 gnd |
| subject_GND | (DE-588)4596545-6 (DE-588)4037882-2 (DE-588)4123037-1 (DE-588)4143413-4 |
| title | Mass spectrometry data analysis in proteomics |
| title_auth | Mass spectrometry data analysis in proteomics |
| title_exact_search | Mass spectrometry data analysis in proteomics |
| title_exact_search_txtP | Mass spectrometry data analysis in proteomics |
| title_full | Mass spectrometry data analysis in proteomics ed. by Rune Matthiesen |
| title_fullStr | Mass spectrometry data analysis in proteomics ed. by Rune Matthiesen |
| title_full_unstemmed | Mass spectrometry data analysis in proteomics ed. by Rune Matthiesen |
| title_short | Mass spectrometry data analysis in proteomics |
| title_sort | mass spectrometry data analysis in proteomics |
| topic | Proteomics Methodology Mass spectrometry Proteomics methods Spectrum Analysis, Mass methods Expressed Sequence Tags Proteomanalyse (DE-588)4596545-6 gnd Massenspektrometrie (DE-588)4037882-2 gnd Datenanalyse (DE-588)4123037-1 gnd |
| topic_facet | Proteomics Methodology Mass spectrometry Proteomics methods Spectrum Analysis, Mass methods Expressed Sequence Tags Proteomanalyse Massenspektrometrie Datenanalyse Aufsatzsammlung |
| url | http://www.loc.gov/catdir/toc/ecip0613/2006015500.html http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=014918945&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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