Evolution through genetic exchange:
Saved in:
| Main Author: | |
|---|---|
| Format: | Book |
| Language: | English |
| Published: |
Oxford [u.a.]
Oxford Univ. Press
2006
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| Subjects: | |
| Online Access: | Table of contents Inhaltsverzeichnis |
| Physical Description: | XIV, 252 S. Ill., graph. Darst. |
| ISBN: | 0198570066 9780198570066 |
Staff View
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| 245 | 1 | 0 | |a Evolution through genetic exchange |c Michael L. Arnold |
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Record in the Search Index
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|---|---|
| adam_text |
Evolution Through
Genetic Exchange
Michael L Arnold
Department of Genetics, University of Georgia, Athens, Georgia, USA
OXTORD
UNIVERSITY PRESS
Contents
1 History of investigations 1
1 1 Pre-Darwin, Darwin, the Modern Synthesis and genetic exchange:
development of a paradigm 1
1 2 Post-Modern Synthesis: case studies of genetic exchange 5
121 Louisiana irises 5
122 Plague 11
123 Darwin's finches 13
124 Influenza 18
1 3 Summary and conclusions 21
2 The role of species concepts 23
2 1 Species concepts and understanding genetic exchange 23
2 2 Genetic exchange considered through four species concepts 24
221 Biological species concept 24
222 Phylogenetic species concept 28
223 Cohesion species concept 30
224 Prokaryotic species concept 31
2 3 Summary and conclusions 33
3 Testing the hypothesis 34
3 1 Genetic exchange as a testable hypothesis 34
3 2 Controversy over genetic exchange: examples from oaks 35
321 North American oaks 35
322 European oaks 37
3 3 Methods to test for genetic exchange 38
331 Concordance across data sets: hybrid zone analyses 38
332 Phylogenetic discordance 47
333 Gene genealogies and models of speciation 55
334 Intragenomic divergence 57
335 Nested clade analysis 59
3 4 Summary and conclusions 61
4 Barriers to gene flow 62
4 1 Barriers to exchange form a multi-stage process 62
4 2 Genetic exchange: Louisiana irises and reproductive barriers 63
421 Ecological setting as a barrier 63
422 Gamete competition as a barrier 65
x i
xii CONTENTS
423 Hybrid viability as a barrier 66'
424 Hybrid fertility as a barrier 67
4 3 Genetic exchange: five stages of reproductive isolation 67
431 Ecological setting 67
432 Behavioral characteristics 72
433 Gamete competition 76
434 Hybrid viability 77
435 Hybrid fertility 79
4 4 Summary and conclusions 81
5 Hybrid fitness 82
5 1 Components of hybrid fitness 82
5 2 Genetic exchange and fitness: microorganisms 84
521 Mycobacterium tuberculosis 84
522 Legionella pneumophila 85
523 Brazilian purpuric fever 86
524 Entamoeba histolytica 87
525 Bacterial viruses 90
526 Yeast 91
527 Salmonella 92
5 3 Genetic exchange and fitness: plants 93
531 Ipomopsis 93
532 Louisiana irises 94
533 Helianthus 96
534 Artemisia 97
535 Populus 98
536 Hawaiian Silversword complex 101
537 Salix 101
5 4 Genetic exchange and fitness: animals 102
541 Bombina 102
542 Rana 103
543 Cichlids 104
544 Whitefish, redfish, and charr 105
545 Flycatchers 106
546 Manakins 107
5 5 Summary and conclusions 108
6 Gene duplication 109
6 1 Gene duplication and evolution 109
6 2 Genetic exchange: genomewide evolution following duplication 110
621 Genomewide effects—epigenetic changes through methylation 110
622 Genomewide effects—activation of transposable elements 112
623 Genomewide effects—genome downsizing 114
624 Genomewide effects—chromosome rearrangements 115
6 3 Genetic exchange: gene and gene family evolution following duplication 116
631 Genes and gene families: concerted evolution 116
632 Genes and gene families: changes in gene expression patterns
and function 119
633 Genes and gene families: evolution of adaptations 120
CONTENTSxiii
64 Genetic exchange: genome duplication and adaptive radiations 121
641 Duplication and adaptive radiation: the vertebrate lineage 121
642 Duplication and adaptive radiation: the fish clade 122
6 5 Summary and conclusions 122
7 Origin of new evolutionary lineages 123
7 1 Viral recombination, lateral transfer, natural hybridization,
and evolutionary diversification 123
7 2 Natural hybridization, allopolyploidy, and evolutionary diversification
in non-flowering plants 125
721 Ferns 125
722 Bryophytes 127
7 3 Natural hybridization, allopolyploidy, and evolutionary diversification
in flowering plants 128
731 Draba 128
732 Paeonia 129
733 Glycine 131
734 Spartina 132
7 4 Natural hybridization, allopolyploidy, and evolutionary diversification
in animals 133
741 Parthenogenesis 133
742 Gynogenesis 137
743 Sexually reproducing, allopolyploid animals 139
7 5 Natural hybridization, homoploidy, and evolutionary diversification 141
751 Evolution by homoploid hybrid lineage formation in plants 141
752 Evolution by homoploid hybrid lineage formation in
animals—parthenogenetic and hybridogenetic taxa 144
753 Evolution by homoploid hybrid lineage formation in
animals—sexually reproducing taxa 145
7 6 Viral recombination, lateral exchange, introgressive hybridization,
and evolutionary diversification in microorganisms 147
761 Viral recombination, lateral exchange, and the evolution of
bacteriophages 147
762 Lateral exchange and the evolution of bacterial lineages 148
763 Introgressive hybridization and the evolution of the protozoan
genus Trypanosoma 149
7 7 Summary and conclusions 150
8 Implications for endangered taxa 151
8 1 Introgressive hybridization and the conservation and restoration
of endangered taxa 151
8 2 Introgressive hybridization involving endangered plant taxa 152
821 Eucalyptus 152
822 Carpobrotus 154
823 Taraxacum 156
8 3 Introgressive hybridization involving endangered animal taxa 157
831 Felidae 157
832 African elephants 159
833 Aves 160
8 4 Summary and conclusions 163
xiv CONTENTS
9 Humans and associated lineages
9 1 The role of genetic exchange in the evolutionary history of humans
and their food, drugs, clothing, and diseases
9 2 Introgressive hybridization and the evolution of Homo sapiens
921 Hominoids
9 3 Introgressive hybridization, hybrid speciation, and the evolution
of human food sources
931 Animals
932 • Plants
9 4 Introgressive hybridization, hybrid speciation, and the evolution
of human drugs
941 Coffee
942 Chocolate
943 Tobacco
9 5 Introgressive hybridization, hybrid speciation, and the evolution
of pathogens of plants utilized by humans
951 Phytophthora
952 Dutch elm disease
953 Erwinia carotovora
9 6 Introgressive hybridization, hybrid speciation, and the evolution
of human clothing materials
961 Leather
962 Deer skin
963 Cotton
9 7 Introgressive hybridization, hybrid speciation, and the evolution
of human disease vectors
971 Anopheles funestus
972 Culex pipiens
9 8 Lateral transfer and the evolution of human diseases
981 Propionibacterium acnes
982 Burkholderia pseudomallei
9 9 Human-mediated genetic exchange
9 10 Summary and conclusions
10 Emergent properties
10 1 Genetic exchange is pervasive
10 2 Genetic exchange: research directions
Glossary
Reference
Index |
| adam_txt |
Evolution Through
Genetic Exchange
Michael L Arnold
Department of Genetics, University of Georgia, Athens, Georgia, USA
OXTORD
UNIVERSITY PRESS
Contents
1 History of investigations 1
1 1 Pre-Darwin, Darwin, the Modern Synthesis and genetic exchange:
development of a paradigm 1
1 2 Post-Modern Synthesis: case studies of genetic exchange 5
121 Louisiana irises 5
122 Plague 11
123 Darwin's finches 13
124 Influenza 18
1 3 Summary and conclusions 21
2 The role of species concepts 23
2 1 Species concepts and understanding genetic exchange 23
2 2 Genetic exchange considered through four species concepts 24
221 Biological species concept 24
222 Phylogenetic species concept 28
223 Cohesion species concept 30
224 Prokaryotic species concept 31
2 3 Summary and conclusions 33
3 Testing the hypothesis 34
3 1 Genetic exchange as a testable hypothesis 34
3 2 Controversy over genetic exchange: examples from oaks 35
321 North American oaks 35
322 European oaks 37
3 3 Methods to test for genetic exchange 38
331 Concordance across data sets: hybrid zone analyses 38
332 Phylogenetic discordance 47
333 Gene genealogies and models of speciation 55
334 Intragenomic divergence 57
335 Nested clade analysis 59
3 4 Summary and conclusions 61
4 Barriers to gene flow 62
4 1 Barriers to exchange form a multi-stage process 62
4 2 Genetic exchange: Louisiana irises and reproductive barriers 63
421 Ecological setting as a barrier 63
422 Gamete competition as a barrier 65
x i
xii CONTENTS
423 Hybrid viability as a barrier 66'
424 Hybrid fertility as a barrier 67
4 3 Genetic exchange: five stages of reproductive isolation 67
431 Ecological setting 67
432 Behavioral characteristics 72
433 Gamete competition 76
434 Hybrid viability 77
435 Hybrid fertility 79
4 4 Summary and conclusions 81
5 Hybrid fitness 82
5 1 Components of hybrid fitness 82
5 2 Genetic exchange and fitness: microorganisms 84
521 Mycobacterium tuberculosis 84
522 Legionella pneumophila 85
523 Brazilian purpuric fever 86
524 Entamoeba histolytica 87
525 Bacterial viruses 90
526 Yeast 91
527 Salmonella 92
5 3 Genetic exchange and fitness: plants 93
531 Ipomopsis 93
532 Louisiana irises 94
533 Helianthus 96
534 Artemisia 97
535 Populus 98
536 Hawaiian Silversword complex 101
537 Salix 101
5 4 Genetic exchange and fitness: animals 102
541 Bombina 102
542 Rana 103
543 Cichlids 104
544 Whitefish, redfish, and charr 105
545 Flycatchers 106
546 Manakins 107
5 5 Summary and conclusions 108
6 Gene duplication 109
6 1 Gene duplication and evolution 109
6 2 Genetic exchange: genomewide evolution following duplication 110
621 Genomewide effects—epigenetic changes through methylation 110
622 Genomewide effects—activation of transposable elements 112
623 Genomewide effects—genome downsizing 114
624 Genomewide effects—chromosome rearrangements 115
6 3 Genetic exchange: gene and gene family evolution following duplication 116
631 Genes and gene families: concerted evolution 116
632 Genes and gene families: changes in gene expression patterns
and function 119
633 Genes and gene families: evolution of adaptations 120
CONTENTSxiii
64 Genetic exchange: genome duplication and adaptive radiations 121
641 Duplication and adaptive radiation: the vertebrate lineage 121
642 Duplication and adaptive radiation: the fish clade 122
6 5 Summary and conclusions 122
7 Origin of new evolutionary lineages 123
7 1 Viral recombination, lateral transfer, natural hybridization,
and evolutionary diversification 123
7 2 Natural hybridization, allopolyploidy, and evolutionary diversification
in non-flowering plants 125
721 Ferns 125
722 Bryophytes 127
7 3 Natural hybridization, allopolyploidy, and evolutionary diversification
in flowering plants 128
731 Draba 128
732 Paeonia 129
733 Glycine 131
734 Spartina 132
7 4 Natural hybridization, allopolyploidy, and evolutionary diversification
in animals 133
741 Parthenogenesis 133
742 Gynogenesis 137
743 Sexually reproducing, allopolyploid animals 139
7 5 Natural hybridization, homoploidy, and evolutionary diversification 141
751 Evolution by homoploid hybrid lineage formation in plants 141
752 Evolution by homoploid hybrid lineage formation in
animals—parthenogenetic and hybridogenetic taxa 144
753 Evolution by homoploid hybrid lineage formation in
animals—sexually reproducing taxa 145
7 6 Viral recombination, lateral exchange, introgressive hybridization,
and evolutionary diversification in microorganisms 147
761 Viral recombination, lateral exchange, and the evolution of
bacteriophages 147
762 Lateral exchange and the evolution of bacterial lineages 148
763 Introgressive hybridization and the evolution of the protozoan
genus Trypanosoma 149
7 7 Summary and conclusions 150
8 Implications for endangered taxa 151
8 1 Introgressive hybridization and the conservation and restoration
of endangered taxa 151
8 2 Introgressive hybridization involving endangered plant taxa 152
821 Eucalyptus 152
822 Carpobrotus 154
823 Taraxacum 156
8 3 Introgressive hybridization involving endangered animal taxa 157
831 Felidae 157
832 African elephants 159
833 Aves 160
8 4 Summary and conclusions 163
xiv CONTENTS
9 Humans and associated lineages
9 1 The role of genetic exchange in the evolutionary history of humans
and their food, drugs, clothing, and diseases
9 2 Introgressive hybridization and the evolution of Homo sapiens
921 Hominoids
9 3 Introgressive hybridization, hybrid speciation, and the evolution
of human food sources
931 Animals
932 • Plants
9 4 Introgressive hybridization, hybrid speciation, and the evolution
of human drugs
941 Coffee
942 Chocolate
943 Tobacco
9 5 Introgressive hybridization, hybrid speciation, and the evolution
of pathogens of plants utilized by humans
951 Phytophthora
952 Dutch elm disease
953 Erwinia carotovora
9 6 Introgressive hybridization, hybrid speciation, and the evolution
of human clothing materials
961 Leather
962 Deer skin
963 Cotton
9 7 Introgressive hybridization, hybrid speciation, and the evolution
of human disease vectors
971 Anopheles funestus
972 Culex pipiens
9 8 Lateral transfer and the evolution of human diseases
981 Propionibacterium acnes
982 Burkholderia pseudomallei
9 9 Human-mediated genetic exchange
9 10 Summary and conclusions
10 Emergent properties
10 1 Genetic exchange is pervasive
10 2 Genetic exchange: research directions
Glossary
Reference
Index |
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| id | DE-604.BV021662301 |
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| index_date | 2024-07-02T15:06:23Z |
| indexdate | 2024-07-20T07:52:37Z |
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| isbn | 0198570066 9780198570066 |
| language | English |
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| spelling | Arnold, Michael L. Verfasser aut Evolution through genetic exchange Michael L. Arnold Oxford [u.a.] Oxford Univ. Press 2006 XIV, 252 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Evolutie gtt Hybridisering gtt Hybridization Evolution (Biology) Hybridisierung Biologie (DE-588)4215969-6 gnd rswk-swf Bastardierung (DE-588)4280843-1 gnd rswk-swf Evolution (DE-588)4071050-6 gnd rswk-swf Evolution (DE-588)4071050-6 s Hybridisierung Biologie (DE-588)4215969-6 s DE-604 Bastardierung (DE-588)4280843-1 s b DE-604 http://www.loc.gov/catdir/enhancements/fy0639/2006012751-t.html Table of contents HEBIS Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=014876790&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Arnold, Michael L. Evolution through genetic exchange Evolutie gtt Hybridisering gtt Hybridization Evolution (Biology) Hybridisierung Biologie (DE-588)4215969-6 gnd Bastardierung (DE-588)4280843-1 gnd Evolution (DE-588)4071050-6 gnd |
| subject_GND | (DE-588)4215969-6 (DE-588)4280843-1 (DE-588)4071050-6 |
| title | Evolution through genetic exchange |
| title_auth | Evolution through genetic exchange |
| title_exact_search | Evolution through genetic exchange |
| title_exact_search_txtP | Evolution through genetic exchange |
| title_full | Evolution through genetic exchange Michael L. Arnold |
| title_fullStr | Evolution through genetic exchange Michael L. Arnold |
| title_full_unstemmed | Evolution through genetic exchange Michael L. Arnold |
| title_short | Evolution through genetic exchange |
| title_sort | evolution through genetic exchange |
| topic | Evolutie gtt Hybridisering gtt Hybridization Evolution (Biology) Hybridisierung Biologie (DE-588)4215969-6 gnd Bastardierung (DE-588)4280843-1 gnd Evolution (DE-588)4071050-6 gnd |
| topic_facet | Evolutie Hybridisering Hybridization Evolution (Biology) Hybridisierung Biologie Bastardierung Evolution |
| url | http://www.loc.gov/catdir/enhancements/fy0639/2006012751-t.html http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=014876790&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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