Compositional evolution: the impact of sex, symbiosis, and modularity on the gradualist framework of evolution
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| Main Author: | |
|---|---|
| Format: | Book |
| Language: | English |
| Published: |
Cambridge, Mass. [u.a.]
MIT Press
2006
|
| Series: | The Vienna series in theoretical biology
A Bradford book |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Item Description: | Includes bibliographical references |
| Physical Description: | XVI, 324 S. graph. Darst. |
| ISBN: | 026223243X |
Staff View
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Record in the Search Index
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| adam_text | Compositional Evolution
The Impact of Sex, Symbiosis, and Modularity on, the Gradualist
Framework of Evolution
Richard A Watson
A Bradford Book
The MIT Press
Cambridge, Massachusetts
London, England
Contents
Preface xi
Acknowledgments xvii
Series Foreword xix
Introduction 1
1 1 Gradual and Compositional Evolution 3
1 2 The Algorithmic Paradigms of Evolution 8
1 3 Complex Systems with Modular Interdependency and Their
(Un)evolvability 12
5 2 Difficulty of Modular Interdependency for Gradual Mechanisms 150
Compositional Mechanisms
The Impact on Gradualism
Some Related Issues
Contributions
Gradual Evolution
The Gradualist Framework of Evolution
Evolutionary Algorithms
Concepts of Evolutionary Difficulty
Summary
Compositional Evolution
Compositional Mechanisms
Models of Composition
Some Issues in the Use of Compositional Mechanisms
Some Conceptual Issues of Compositional Evolution
Summary
Modularity
Interdependency
Modular Interdependency
Hierarchical Modular Interdependency
Hierarchical-If-and-Only-If (HIFF)
Discussion
Summary
Mutation
5 1 Examining the Fitness Landscape
viii Contents
5 3 Expected Time to Solution for Gradual Mechanisms 155
5 4 Simulation Results for Mutation 157
5 5 Summary 160
6 Sexual Recombination 163
6 1 Overview of Models 164
6 2 Results for a Single Panmictic Population—The Simple GA 165
6 3 Results for a Subdivided or Niched Population—GA with
Crowding * 167
6 4 The Dependence on Physical Linkage 174
6 5 The Impact for GA Theory 183
6 6 Summary 185
7 Symbiotic Encapsulation 191
7 1 An Overview of the Symbiotic Encapsulation Model 191
7 2 Entities and Their Encapsulation 193
7 3 Evaluation and Selection 200
7 4 The Symbiogenic Evolutionary Adaptation Model (SEAM) 205
7 5 Simulation Results for Symbiotic Encapsulation 205
7 6 The Relationship of SEAM to Other Algorithmic Methods 210
7 7 Summary 217
8 How Fast Is Fast? * 219
8 1 An Analysis of Sexual Recombination on HIFF 219
8 2 An Analysis of SEAM on Shuffled HIFF 234
8 3 Summary 243
9 Scaling Up Evolution 245
9 1 Units in Sexual Populations 247
9 2 Scaling Up Evolution with Symbiotic Encapsulation 255
9 3 The Inherent Tension of Innovation and Reproductive Fidelity 265
10 The Impact of Compositional Evolution 267
10 1 Future and Ongoing Research 267
10 2 Large Directed Adaptive Genetic Changes 274
10 3 Symbiosis as a Source of Evolutionary Innovation 276
10 4 Evolutionary Difficulty and Gradualism 277
10 5 Algorithmic Principles of Adaptation 277
Contents
10 6 The Availability and Impact of Compositional Mechanisms in
Nature 279
10 7 Modularity in Natural Systems 280
10 8 Conclusions 285
Notes 291
Glossary 295
References 303
Index 319
|
| adam_txt |
Compositional Evolution
The Impact of Sex, Symbiosis, and Modularity on, the Gradualist
Framework of Evolution
Richard A Watson
A Bradford Book
The MIT Press
Cambridge, Massachusetts
London, England
Contents
Preface xi
Acknowledgments xvii
Series Foreword xix
Introduction 1
1 1 Gradual and Compositional Evolution 3
1 2 The Algorithmic Paradigms of Evolution 8
1 3 Complex Systems with Modular Interdependency and Their
(Un)evolvability 12
5 2 Difficulty of Modular Interdependency for Gradual Mechanisms 150
Compositional Mechanisms
The Impact on Gradualism
Some Related Issues
Contributions
Gradual Evolution
The Gradualist Framework of Evolution
Evolutionary Algorithms
Concepts of Evolutionary Difficulty
Summary
Compositional Evolution
Compositional Mechanisms
Models of Composition
Some Issues in the Use of Compositional Mechanisms
Some Conceptual Issues of Compositional Evolution
Summary
Modularity
Interdependency
Modular Interdependency
Hierarchical Modular Interdependency
Hierarchical-If-and-Only-If (HIFF)
Discussion
Summary
Mutation
5 1 Examining the Fitness Landscape
viii Contents
5 3 Expected Time to Solution for Gradual Mechanisms 155
5 4 Simulation Results for Mutation 157
5 5 Summary 160
6 Sexual Recombination 163
6 1 Overview of Models 164
6 2 Results for a Single Panmictic Population—The Simple GA 165
6 3 Results for a Subdivided or Niched Population—GA with
Crowding * 167
6 4 The Dependence on Physical Linkage 174
6 5 The Impact for GA Theory 183
6 6 Summary 185
7 Symbiotic Encapsulation 191
7 1 An Overview of the Symbiotic Encapsulation Model 191
7 2 Entities and Their Encapsulation 193
7 3 Evaluation and Selection 200
7 4 The Symbiogenic Evolutionary Adaptation Model (SEAM) 205
7 5 Simulation Results for Symbiotic Encapsulation 205
7 6 The Relationship of SEAM to Other Algorithmic Methods 210
7 7 Summary 217
8 How Fast Is Fast? * 219
8 1 An Analysis of Sexual Recombination on HIFF 219
8 2 An Analysis of SEAM on Shuffled HIFF 234
8 3 Summary 243
9 Scaling Up Evolution 245
9 1 Units in Sexual Populations 247
9 2 Scaling Up Evolution with Symbiotic Encapsulation 255
9 3 The Inherent Tension of Innovation and Reproductive Fidelity 265
10 The Impact of Compositional Evolution 267
10 1 Future and Ongoing Research 267
10 2 Large Directed Adaptive Genetic Changes 274
10 3 Symbiosis as a Source of Evolutionary Innovation 276
10 4 Evolutionary Difficulty and Gradualism 277
10 5 Algorithmic Principles of Adaptation 277
Contents
10 6 The Availability and Impact of Compositional Mechanisms in
Nature 279
10 7 Modularity in Natural Systems 280
10 8 Conclusions 285
Notes 291
Glossary 295
References 303
Index 319 |
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| discipline | Biologie |
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| isbn | 026223243X |
| language | English |
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| spelling | Watson, Richard A. Verfasser aut Compositional evolution the impact of sex, symbiosis, and modularity on the gradualist framework of evolution Richard A. Watson Cambridge, Mass. [u.a.] MIT Press 2006 XVI, 324 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier The Vienna series in theoretical biology A Bradford book Includes bibliographical references Bio-informatique Réseaux neuronaux à structure évolutive Évolution (Biologie) - Modèles mathématiques Mathematisches Modell Evolution (Biology) Mathematical models Computational biology Evolutionary computation Mathematisches Modell (DE-588)4114528-8 gnd rswk-swf Evolution (DE-588)4071050-6 gnd rswk-swf Evolution (DE-588)4071050-6 s Mathematisches Modell (DE-588)4114528-8 s b DE-604 HEBIS Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=014571831&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Watson, Richard A. Compositional evolution the impact of sex, symbiosis, and modularity on the gradualist framework of evolution Bio-informatique Réseaux neuronaux à structure évolutive Évolution (Biologie) - Modèles mathématiques Mathematisches Modell Evolution (Biology) Mathematical models Computational biology Evolutionary computation Mathematisches Modell (DE-588)4114528-8 gnd Evolution (DE-588)4071050-6 gnd |
| subject_GND | (DE-588)4114528-8 (DE-588)4071050-6 |
| title | Compositional evolution the impact of sex, symbiosis, and modularity on the gradualist framework of evolution |
| title_auth | Compositional evolution the impact of sex, symbiosis, and modularity on the gradualist framework of evolution |
| title_exact_search | Compositional evolution the impact of sex, symbiosis, and modularity on the gradualist framework of evolution |
| title_exact_search_txtP | Compositional evolution the impact of sex, symbiosis, and modularity on the gradualist framework of evolution |
| title_full | Compositional evolution the impact of sex, symbiosis, and modularity on the gradualist framework of evolution Richard A. Watson |
| title_fullStr | Compositional evolution the impact of sex, symbiosis, and modularity on the gradualist framework of evolution Richard A. Watson |
| title_full_unstemmed | Compositional evolution the impact of sex, symbiosis, and modularity on the gradualist framework of evolution Richard A. Watson |
| title_short | Compositional evolution |
| title_sort | compositional evolution the impact of sex symbiosis and modularity on the gradualist framework of evolution |
| title_sub | the impact of sex, symbiosis, and modularity on the gradualist framework of evolution |
| topic | Bio-informatique Réseaux neuronaux à structure évolutive Évolution (Biologie) - Modèles mathématiques Mathematisches Modell Evolution (Biology) Mathematical models Computational biology Evolutionary computation Mathematisches Modell (DE-588)4114528-8 gnd Evolution (DE-588)4071050-6 gnd |
| topic_facet | Bio-informatique Réseaux neuronaux à structure évolutive Évolution (Biologie) - Modèles mathématiques Mathematisches Modell Evolution (Biology) Mathematical models Computational biology Evolutionary computation Evolution |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=014571831&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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