Research in computational molecular biology: 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, MAY 14 - 18, 2005 ; proceedings
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| Format: | Conference Proceeding Book |
|---|---|
| Language: | English |
| Published: |
Berlin [u.a.]
Springer
2005
|
| Series: | Lecture notes in computer science
3500 |
| Subjects: | |
| Online Access: | Inhaltstext Inhaltsverzeichnis |
| Physical Description: | XVII, 632 S. Ill., graph. Darst. |
| ISBN: | 9783540258667 3540258663 |
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| adam_text |
SATORU MIYANO JILL MESIROV
SIMON
KASIF SORIN ISTRAIL
PAVEL
PEVZNER MICHAEL WATERMAN (EDS.)
RESEARCH IN
COMPUTATIONAL
MOLECULAR
BIOLOGY
9TH ANNUAL INTERNATIONAL CONFERENCE, RECOMB 2005
CAMBRIDGE,
MA, USA, MAY 14-18, 2005
PROCEEDINGS
4Y SPRINGER
TABLE
OF
CONTENTS
EFFICIENT ALGORITHMS
FOR
DETECTING SIGNALING PATHWAYS
IN
PROTEIN
INTERACTION
NETWORKS
JACOB
SCOTT, TREY IDEKER, RICHARD
M.
KARP,
RODED
SHARAN
1
TOWARDS
AN
INTEGRATED PROTEIN-PROTEIN INTERACTION NETWORK
ARIEL
JAIMOVICH, GAL ELIDAN, HANAH MARGALIT,
NIR
FRIEDMAN
14
THE FACTOR GRAPH NETWORK MODEL FOR BIOLOGICAL SYSTEMS
IRIT
GAT-
VIKS,
AMOS TANAY, DANIELA RAIJMAN, RON SHAMIR
31
PAIRWISE LOCAL ALIGNMENT
OF
PROTEIN INTERACTION NETWORKS GUIDED
BY
MODELS
OF EVOLUTION
MEHMET
KOYUTIIRK, ANANTH GRAMA,
WOJCIECH SZPANKOWSKI
48
FINDING NOVEL TRANSCRIPTS IN HIGH-RESOLUTION GENOME-WIDE MICROARRAY
DATA
USING THE GENRATE MODEL
BRENDAN
J.
PREY, QUAID D. MORRIS, MARK ROBINSON,
TIMOTHY
R. HUGHES
66
EFFICIENT CALCULATION OF INTERVAL SCORES
FOR
DNA COPY NUMBER DATA
ANALYSIS
BORON
LIPSON, YONATAN AUMANN, AMIR BEN-DOR, NATHAN LINIAL,
ZOHAR
YAKHINI
83
KEYNOTE
A
REGULATORY NETWORK CONTROLLING DROSOPHILA DEVELOPMENT
DMITRI
PAPATSENKO, MIKE LEVINE
101
KEYNOTE
YEAST CELLS AS
A
DISCOVERY PLATFORM FOR NEURODEGENERATIVE DISEASE
SUSAN
LINDQUIST, ERNEST
FRAENKEL,
TIAGO OUTEIRO, AARON GITLER,
JULIE
SU, ANIL
CASHIKAR,
SMITHA JAGADISH
102
RIBRA
-
AN ERROR-TOLERANT ALGORITHM
FOR
THE NMR BACKBONE
ASSIGNMENT
PROBLEM
KUEN-PIN
WU, JIA-MING
CHANG,
JUN-BO CHEN, CHI-FON CHANG,
WEN-JIN
WU,
TAI-HUANG
HUANG,
TING-YI SUNG, WEN-LIAN HSU
103
XIV TABLE OF CONTENTS
AVOIDING LOCAL OPTIMA IN SINGLE PARTICLE RECONSTRUCTION
MARSHALL
BERN, JINDONG CHEN, HAO CHI WONG
118
A HIGH-THROUGHPUT APPROACH FOR ASSOCIATING MICRORNAS WITH THEIR
ACTIVITY
CONDITIONS
CHAYA
BEN-ZAKEN ZILBERSTEIN, MICHAL ZIV-UKELSON, RON Y. PINTER,
ZOHAR
YAKHINI
133
RNA-RNA INTERACTION PREDICTION AND ANTISENSE RNA TARGET SEARCH
CAN
ALKAN, EMRE
KARAKOG,
JOSEPH H. NADEAU, S. CENK SAHINALP,
KAIZHONG
ZHANG
152
CONSENSUS FOLDING OF UNALIGNED RNA SEQUENCES REVISITED
VINEET
BAFNA, HAIXU TANG, SHAOJIE ZHANG
172
KEYNOTE
DISCOVERY AND ANNOTATION OF GENETIC MODULES
CHARLES
DELISI
188
EFFICIENT G-GRAM FILTERS FOR FINDING ALL E-MATCHES OVER A GIVEN LENGTH
KIM
R. RASMUSSEN, JENS STOYE, EUGENE W. MYERS
189
A POLYNOMIAL TIME SOLVABLE FORMULATION OF MULTIPLE SEQUENCE
ALIGNMENT
SING-HOI
SZE, YUE LU, QINGWU YANG
204
A FUNDAMENTAL DECOMPOSITION THEORY FOR PHYLOGENETIC NETWORKS AND
INCOMPATIBLE
CHARACTERS
DAN
GUSFIELD,
VIKAS BANSAL
217
RECONSTRUCTION OF RETICULATE NETWORKS FROM GENE TREES
DANIEL
H. HUSON, TOBIAS
KLB'PPER,
PETE J. LOCKHART,
MIKE
A. STEEL
233
A HYBRID MICRO-MACROEVOLUTIONARY APPROACH TO GENE TREE
RECONSTRUCTION
DANNIE
DURAND, BJARNI V. HALLDORSSON, BENJAMIN VERNOT
250
CONSTRUCTING A SMALLEST REFINING GALLED PHYLOGENETIC NETWORK
TRINH
N.D. HUYNH, JESPER JANSSON, NGUYEN BAO NGUYEN,
WING-KIN
SUNG
265
TABLE
OF
CONTENTS
XV
KEYNOTE
MAPPING MOLECULAR LANDSCAPES INSIDE CELLS
WOLFGANG
BAUMEISTER
281
INFORMATION THEORETIC APPROACHES TO WHOLE GENOME PHYLOGENIES
DAVID
BURSTEIN, IGOR
ULITSKY,
TAMIR
TULLER,
BENNY CHOR
283
MAXIMUM LIKELIHOOD OF EVOLUTIONARY TREES IS HARD
BENNY
CHOR, TAMIR TULLER
296
GRAPH THEORETICAL INSIGHTS INTO EVOLUTION OF MULTIDOMAIN PROTEINS
TERESA
PRZYTYCKA, GEORGE DAVIS,
NAN
SONG,
DANNIE
DURAND
311
PEPTIDE SEQUENCE TAGS FOR FAST DATABASE SEARCH IN MASS-SPECTROMETRY
ARI
FRANK,
STEPHEN TANNER, PAVEL PEVZNER
326
A
HIDDEN MARKOV MODEL BASED SCORING FUNCTION FOR MASS SPECTROMETRY
DATABASE
SEARCH
YUNHU
WAN, TING CHEN
342
EIGENMS: DE NOVO ANALYSIS
OF
PEPTIDE TANDEM MASS SPECTRA BY
SPECTRAL
GRAPH PARTITIONING
MARSHALL
BERN, DAVID GOLDBERG
357
KEYNOTE
BIOLOGY AS INFORMATION
ERIC
LANDER
373
USING MULTIPLE ALIGNMENTS
TO
IMPROVE GENE PREDICTION
SAMUEL
S. GROSS, MICHAEL R. BRENT
374
LEARNING INTERPRETABLE SVMS FOR BIOLOGICAL SEQUENCE CLASSIFICATION
S.
SONNENBURG, G. RDTSCH, C. SCHDFER
389
SEGMENTATION CONDITIONAL RANDOM FIELDS (SCRFS): A NEW APPROACH
FOR
PROTEIN FOLD RECOGNITION
YAN
LIU,
JAIME CARBONELL, PETER WEIGELE,
VANATHI GOPALAKRISHNAN
408
RAPID PROTEIN SIDE-CHAIN PACKING VIA TREE DECOMPOSITION
JINBO
XU
423
XVI TABLE OF CONTENTS
RECOGNITION
OF
BINDING PATTERNS COMMON
TO A
SET
OF
PROTEIN
STRUCTURES
MAXIM
SHATSKY, ALEXANDRA
SHULMAN-PELEG,
RUTH NUSSINOV,
HAIM
J. WOLF SON
440
PREDICTING PROTEIN-PEPTIDE BINDING AFFINITY
BY
LEARNING
PEPTIDE-PEPTIDE
DISTANCE FUNCTIONS
CHEN
YANOVER, TOMER HERTZ
456
KEYNOTE
AMINO ACID SEQUENCE CONTROL OF THE FOLDING OF THE PARALLEL /3-HELIX,
THE
SIMPLEST 0-SHEET FOLD
JONATHAN
KING, CAMMIE
HAASE-PETTINGELL,
RYAN SIMKOVSKY,
PETER
WEIGELE
472
A PRACTICAL APPROACH
TO
SIGNIFICANCE ASSESSMENT
IN
ALIGNMENT WITH
GAPS
NICHOLAS
CHIA, RALF
BUNDSCHUH
474
ALIGNMENT OF OPTICAL MAPS
ANTON VALOUEV,
LEI LI, YU-CHI LIU, DAVID C. SCHWARTZ,
YI
YANG,
YU
ZHANG,
MICHAEL S. WATERMAN
489
KEYNOTE
ENGINEERING GENE REGULATORY NETWORKS: A REDUCTIONIST APPROACH
TO
SYSTEMS
BIOLOGY
JAMES
J. COLLINS
505
MODELING THE COMBINATORIAL FUNCTIONS OF MULTIPLE TRANSCRIPTION FACTORS
CHEN-HSIANG
YEANG,
TOMMI JAAKKOLA
506
PREDICTING TRANSCRIPTION FACTOR BINDING SITES USING STRUCTURAL
KNOWLEDGE
TOMMY
KAPLAN, NIR FRIEDMAN, HANAH
MARGALIT
522
MOTIF DISCOVERY THROUGH PREDICTIVE MODELING
OF
GENE REGULATION
MANUEL
MIDDENDORF,
ANSHUL KUNDAJE, MIHIR SHAH, YOAV
FREUND,
CHRIS
H. WIGGINS, CHRISTINA LESLIE
538
HAPLOFREQ
-
ESTIMATING HAPLOTYPE FREQUENCIES EFFICIENTLY
ERAN
HALPERIN, ELAD HAZAN
553
TABLE OF CONTENTS XVII
IMPROVED RECOMBINATION LOWER BOUNDS FOR HAPLOTYPE DATA
VINEET
BAFNA, VIKAS BANSAL
569
A LINEAR-TIME ALGORITHM FOR THE PERFECT PHYLOGENY HAPLOTYPING
(PPH)
PROBLEM
ZHIHONG
DING, VLADIMIR FILKOV, DAN GUSFIELD
585
KEYNOTE
HUMAN GENOME SEQUENCE VARIATION AND THE INHERITED BASIS OF
COMMON
DISEASE
DAVID
ALTSHULER
601
STABILITY OF REARRANGEMENT MEASURES IN THE COMPARISON OF GENOME
SEQUENCES
DAVID
SANKOFF,
MATTHEW MAZOWITA
603
ON SORTING BY TRANSLOCATIONS
ANNE
BERGERON, JULIA MIXTACKI, JENS STOYE
615
AUTHOR INDEX 631 |
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| spelling | Research in computational molecular biology 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, MAY 14 - 18, 2005 ; proceedings Satoru Miyano ... (eds.) Berlin [u.a.] Springer 2005 XVII, 632 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Lecture notes in computer science 3500 Molekulare Bioinformatik (DE-588)4531334-9 gnd rswk-swf (DE-588)1071861417 Konferenzschrift 2005 Cambridge gnd-content Molekulare Bioinformatik (DE-588)4531334-9 s DE-604 Miyano, Satoru Sonstige oth RECOMB 9 2005 Cambridge, Mass. Sonstige (DE-588)10103067-8 oth Lecture notes in computer science 3500 (DE-604)BV000000607 3500 text/html http://deposit.dnb.de/cgi-bin/dokserv?id=2623641&prov=M&dok_var=1&dok_ext=htm Inhaltstext DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=013148374&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Research in computational molecular biology 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, MAY 14 - 18, 2005 ; proceedings Lecture notes in computer science Molekulare Bioinformatik (DE-588)4531334-9 gnd |
| subject_GND | (DE-588)4531334-9 (DE-588)1071861417 |
| title | Research in computational molecular biology 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, MAY 14 - 18, 2005 ; proceedings |
| title_auth | Research in computational molecular biology 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, MAY 14 - 18, 2005 ; proceedings |
| title_exact_search | Research in computational molecular biology 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, MAY 14 - 18, 2005 ; proceedings |
| title_full | Research in computational molecular biology 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, MAY 14 - 18, 2005 ; proceedings Satoru Miyano ... (eds.) |
| title_fullStr | Research in computational molecular biology 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, MAY 14 - 18, 2005 ; proceedings Satoru Miyano ... (eds.) |
| title_full_unstemmed | Research in computational molecular biology 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, MAY 14 - 18, 2005 ; proceedings Satoru Miyano ... (eds.) |
| title_short | Research in computational molecular biology |
| title_sort | research in computational molecular biology 9th annual international conference recomb 2005 cambridge ma usa may 14 18 2005 proceedings |
| title_sub | 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, MAY 14 - 18, 2005 ; proceedings |
| topic | Molekulare Bioinformatik (DE-588)4531334-9 gnd |
| topic_facet | Molekulare Bioinformatik Konferenzschrift 2005 Cambridge |
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