Bioinformatics and computational biology solutions using R and bioconductor:
Saved in:
| Format: | Book |
|---|---|
| Language: | English |
| Published: |
New York, NY
Springer
2005
|
| Series: | Statistics for biology and health
|
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Physical Description: | XIX, 473 S. Ill., graph. Darst. |
| ISBN: | 0387251464 9780387251462 |
Staff View
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Record in the Search Index
| _version_ | 1804133214630969344 |
|---|---|
| adam_text | Contents
I Preprocessing data from genomic experiments
1
W. Huber, R. A. Irizarry, and R. Gentleman
1.1
1.2
1.2.1
1.2.2
1.3
1.3.1
1.3.2
1.4
1.4.1
1.4.2
1.4.3
1.5
2
B. M. Bolstad, R. A. Irizarry, L.
2.1
2.2
2.2.1
2.2.2
2.3
2.3.1
2.3.2
2.3.3
2.4
2.4.1
2.4.2
2.4.3
2.4.4
2.4.5
viii Contents
2.5
2.5.1
2.6
3
B.M. Bolstad, F. Collin, J.
R. A. Irizarry, and T. P. Speed
3.1
3.2
3.2.1
3.3
3.4
3.5
3.5.1
3.6
4
Y. H. Yang and A. C.
4.1
4.2
4.2.1
4.3
4.3.1
4.3.2
4.3.3
4.3.4
4.3.5
4.3.6
4.3.7
4.4
4.4.1
4.4.2
4.4.3
4.4.4
4.5
4.5.1
4.5.2
4.6
5
W. Huber and
5.1
5.2
5.2.1
5.2.2
Contents ix
5.2.3 Monitoring
5.3
5.3.1
5.3.2
5.3.3
5.4
5.4.1
5.4.2
5.4.3
5.5
5.5.1
5.5.2
5.5.3
SELDI-TOF Mass Spectrometry Protein Data
X. Li, R. Gentleman, X.
A. Miron
6.1
6.2
6.3
6.4
6.4.1
6.4.2
6.4.3
6.4.4
6.4.5
6.4.6
6.5
6.6
II
tion 111
7
R. Gentleman, V. J. Carey, and J. Zhang
7.1
7.2
7.3
packages and Web services
7.3.1
7.3.2
7.3.3
7.4
7.5
x
7.5.1 Basics
7.5.2
7.5.3
7.5.4
evidence codes
7.5.5
7.6
7.6.1
7.6.2
7.6.3
7.7
7.8
7.9
8
V. J. Carey, D. Temple Lang, J. Gentry, J. Zhang, and R.
Gentleman
8.1
8.1.1
8.1.2
8.2
8.2.1
8.2.2
8.3
8.4
8.5
9
C. A. Smith, W. Huber, and R. Gentleman
9.1
9.2
9.3
9.4
9.5
9.5.1
9.5.2
9.5.3
9.6
9.6.1
9.6.2
9.7
9.7.1
9.8
10
Contents xi
W.
10.1
10.2
10.3
10.3.1
10.4
10.4.1
10.5
10.5.1
10.6
10.6.1
10.7
III Statistical analysis for genomic experiments
11
V. J. Carey and R. Gentleman
11.1
11.1.1
11.1.2
11.1.3
11.1.4
11.1.5
11.1.6
11.2
12
R. Gentleman, B. Ding, S. Dudoit, and J. Ibrahim
12.1
12.2
12.2.1
12.2.2
12.2.3
12.2.4
12.3
12.3.1
12.4
12.4.1
12.4.2
12.5
13
K. S. Pollard and M. J. van
13.1
xii Contents
13.2
13.2.1
13.2.2
13.2.3
13.2.4
13.2.5
13.2.6
13.2.7
13.3
13.3.1
13.3.2
13.3.3
13.3.4
13.3.5
13.3.6
13.4
14
D. Scholtens and A.
14.1
14.2
14.2.1
14.2.2
14.3
14.3.1
14.4
15
Applications to Genomics
K.S. Pollard, S. Dudoit, and M. J. van
15.1
15.2
15.2.1
15.2.2
15.2.3
Type I error rates 9{FVn)
15.2.4
family-wise error rate
15.2.5
controlling tail probability error rates
15.3
15.3.1
MTP function
15.3.2
15.4
Contents xiii
15.4.1 ALL
15.4.2
cellular subtype: Two-sample ¿-statistics
15.4.3
15.4.4
molecular subtype: Multi-sample F-statistics
15.4.5
relapse: Cox ¿-statistics
15.5
16
Genomics
V. J. Carey
16.1
16.2
16.3
16.3.1
16.3.2
16.3.3
16.3.4
16.4
16.4.1
data
16.4.2
16.4.3
16.4.4
16.4.5
16.4.6
16.5
17
T. Hothorn, M. Dettling, and P.
17.1
17.2
17.3
17.4
17.5
17.6
17.6.1
17.6.2
17.7
17.8
18
Contents
С.
18.1
18.1.1
18.2
18.2.1
18.2.2
18.2.3
18.3
18.3.1
18.3.2
18.3.3
18.3.4
18.4
18.4.1
18.4.2
18.5
IV Graphs and networks
19
R. Gentleman, W. Huber, and V. J. Carey
19.1
19.2
19.2.1
19.2.2
19.2.3
19.3
19.3.1
19.3.2
19.3.3
citations
19.4
20
W. Huber, R. Gentleman, and V. J. Carey
20.1
20.2
20.2.1
20.2.2
20.2.3
20.2.4
20.3
20.4
Contents xv
21 Bioconductor Software
V.J.
21.1
21.2
21.2.1
21.2.2
21.3
21.3.1
21.3.2
21.3.3
21.4
21.4.1
21.4.2
21.4.3
21
21.4.5
22
R. Gentleman, D. Scholtens, B. Ding, V. J. Carey, and W. Huber
22.1
22.2
22.2.1
22.2.2
22.3
22.3.1
22.4
22.4.1
22.4.2
22.4.3
22.5
22.5.1
22.5.2
22.6
V Case studies
23
G. K. Smyth
23.1
23.2
23.3
23.4
23.5
23.6
xvi Contents
23.7
23.8
23.9
23.10
23.11
23.12
23.13
23.14
23.15
24
M. Dettling
24.1
24.2
24.3
24.4
24.5
24.6
25
R. A. Irizarry
25.1
25.2
25.3
25.4
25.4.1
25.4.2
25.4.3
25.5
25.5.1
25.5.2
25.6
A Details on selected resources
A.I
A.I.I ALL
A.1.2 Renal cell cancer
A.
A.
References
Index
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| discipline | Biologie Informatik Wirtschaftswissenschaften |
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| isbn | 0387251464 9780387251462 |
| language | English |
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| spelling | Bioinformatics and computational biology solutions using R and bioconductor Robert Gentleman ... ed. New York, NY Springer 2005 XIX, 473 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Statistics for biology and health Bioconductor (Computer file) Bioinformatics Computational Biology methods Models, Statistical Programming Languages R (Computer program language) Statistik (DE-588)4056995-0 gnd rswk-swf Bioinformatik (DE-588)4611085-9 gnd rswk-swf Molekulare Bioinformatik (DE-588)4531334-9 gnd rswk-swf Molekulare Bioinformatik (DE-588)4531334-9 s DE-604 Bioinformatik (DE-588)4611085-9 s Statistik (DE-588)4056995-0 s Gentleman, Robert Sonstige oth Digitalisierung UB Regensburg application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=013072294&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Bioinformatics and computational biology solutions using R and bioconductor Bioconductor (Computer file) Bioinformatics Computational Biology methods Models, Statistical Programming Languages R (Computer program language) Statistik (DE-588)4056995-0 gnd Bioinformatik (DE-588)4611085-9 gnd Molekulare Bioinformatik (DE-588)4531334-9 gnd |
| subject_GND | (DE-588)4056995-0 (DE-588)4611085-9 (DE-588)4531334-9 |
| title | Bioinformatics and computational biology solutions using R and bioconductor |
| title_auth | Bioinformatics and computational biology solutions using R and bioconductor |
| title_exact_search | Bioinformatics and computational biology solutions using R and bioconductor |
| title_full | Bioinformatics and computational biology solutions using R and bioconductor Robert Gentleman ... ed. |
| title_fullStr | Bioinformatics and computational biology solutions using R and bioconductor Robert Gentleman ... ed. |
| title_full_unstemmed | Bioinformatics and computational biology solutions using R and bioconductor Robert Gentleman ... ed. |
| title_short | Bioinformatics and computational biology solutions using R and bioconductor |
| title_sort | bioinformatics and computational biology solutions using r and bioconductor |
| topic | Bioconductor (Computer file) Bioinformatics Computational Biology methods Models, Statistical Programming Languages R (Computer program language) Statistik (DE-588)4056995-0 gnd Bioinformatik (DE-588)4611085-9 gnd Molekulare Bioinformatik (DE-588)4531334-9 gnd |
| topic_facet | Bioconductor (Computer file) Bioinformatics Computational Biology methods Models, Statistical Programming Languages R (Computer program language) Statistik Bioinformatik Molekulare Bioinformatik |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=013072294&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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