Genotype x environment interaction: challenges and opportunities for plant breeding and cultivar recommendations
Gespeichert in:
| 1. Verfasser: | |
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| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Rome
FAO
2002
|
| Schriftenreihe: | FAO plant production and protection paper
174 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XI, 115 S. graph. Darst. 1 CD-RIM (12 cm) |
| ISBN: | 9251048703 |
Internformat
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Datensatz im Suchindex
| _version_ | 1804130441689563136 |
|---|---|
| adam_text | Titel: Genotype x environment interaction
Autor: Annicchiarico, Paolo
Jahr: 2002
Table of contents
List of abbreviations vii
List of tables viii
List of figures x
1. Introduction 1
1.1 Background 1
1.2 Genotype and environment 2
1.3 Elements of a breeding strategy 3
2. Adaptation and yield stability 5
2.1 Analysis of adaptation 5
2.2 Definition of adaptation strategies 7
2.3 Wide vs. specific adaptation in breeding programmes 9
2.4 Targeting varieties 10
2.5 Assessment of yield stability and reliability 11
2.6 Two analytical flow-charts 12
3. Multi-environment yield trials 17
3.1 Types of trials and requirements of the generated information 17
3.2 Additional information on environmental factors and genotypic traits 19
4. Analysis of variance (ANOVA) and estimation of variance components 21
4.1 Models of ANOVA 21
4.2 Estimation of individual effects and comparison of means 25
4.3 Estimation of variance components 26
4.4 Data transformation 27
4.5 Computer software 29
5. Analysis of adaptation and identification of subregions 31
5.1 Objectives of the analysis 31
5.2 Joint linear regression modelling and complementary analyses 32
5.3 AMMI modelling and complementary analyses 35
5.4 Factorial regression modelling and complementary analyses 44
5.5 Pattern analysis 49
5.6 Data transformation 51
5.7 Unbalanced data sets 55
5.8 Characterization of subregions and scaling-up of results 56
5.9 Computer software 61
6. Definition of adaptation strategy, selection environments, genetic resources 67
and adaptive traits
6.1 Adaptation strategy 67
6.2 Selection environments 71
6.3 Cienetic resources and adaptive traits 73
7. Measures of yield stability and yield reliability 79
7.1 Yield stability 79
7.2 Yield reliability 83
7.3 Computer software 86
8. Case study: durum wheat in Algeria 89
8.1 Experiment data 89
8.2 Adaptation strategy and yield stability targets for breeding 91
8.3 Cultivar recommendation 96
References 105
List of tables
2.1 Complexity of adaptation patterns as depicted by the number of significant PC axes in 7
the analysis of GE and GL data matrices of six data sets
3.1 Mean yield of bread wheat varieties over two years and over four other years in trials 18
repeated across a fixed set of locations, for two independent data sets
4.1 ANOVA models including the factors G = genotype and L = location or environment, and 23
destimation of variance components, for trials in a randomized complete block design
4.2 ANOVA models including the factors G = genotype, L = location and Y = year, and 23
estimation of variance components, for trials in a randomized complete block design
repeated in same years (i.e. L and Y crossed factors)
4.3 ANOVA models including the factors G = genotype, L = location and Y = year, and 23
estimation of variance components, for trials in a randomized complete block design
repeated in different years in each location
4.4 Analysis of variance for 18 bread wheat varieties grown for three years in 31 Italian 24
locations, with partitioning of GL interaction by: 1) joint regression analysis; 2) AMMI
analysis; 3) definition of four subregions
4.5 Calculation of genotype and location main effects, and GL interaction effects, from 25
mean values of genotypes at each location
4.6 Values of / for calculation of Dunnett s one-tailed (or Gupta s) multiple comparisons of 26
the top-ranking genotype with the remaining enrtries
4.7 Relationships of environment mean yield with experimental error, and of location mean 28
yield with within-location phenotypic variance or standard deviation of genotype values,
within-location GY interaction mean square, and average within-location phenotypic
variance of annual yield values for individual genotypes, in different data sets
5.1 Major differences between two possible objectives for analysis of adaptation 31
5.2 Mean yield of four genotypes in four locations and across locations, mean yield of locations 52
and within-location phenotypic standard deviation of genotype mean yields
5.3 Squared Euclidean distance between four locations based on genotype means in each site 52
or genotype x location interaction effects
6.1 Predicted yield gain over the region of lowland northern Italy from selection of lucerne 69
populations pecifically adapted to three or two subregions relative to selection for wide
adaptation
6.2 Mean yield of barley lines previously selected for specific adaptation to either of two 70
subregions or for wide adaptation to the region of northern Syria, yield ratio of specific
to wide adaptation strategies, and actual yield gain relative to mean value of six control
cultivars
7.1 Critical values of Hartley s (1950) test for comparison of several variances, applicable to 83
comparison of yield stability measures of Type 4
8.1 Code, altitude, mean yield, scaled score on the first GL interaction PC axis for original 90
and Iog10-transformed yield data, winter mean temperature and rainfall amount of test
sites
8.2 ANOVA results and estimate of variance components, for original and transformed yield 92
of 24 genotypes grown at 14 locations for two years
8.3 Comparison of analytical methods for definition of two subregions for durum wheat 94
breeding in Algeria. Predicted yield gain over the region from a specific adaptation strategy
relative to wide adaptation
8.4 Mean yield, environmental variance and Kataoka s index of yield reliability across 97
environments, Type 4 stability variance slope of regression on site mean yield, scaled
score on the first GL interaction PC axis, and factorial regression equation for estimating
GL effects, for eight genotypes
List of figures
2.1 Limited and large extent of within-location variation relative to between-location variation 6
for a major environmental factor related to the occurrence of GE interaction, and its
implication on the extent of GE interaction components of variance
2.2 A specific adaptation strategy implying plant breeding at one national research centre, 9
selection of novel germplasm and evaluation of genetic resources in distinct subregions,
and subsequent phases of farmers selection in each subregion
2.3 Flow chart of steps for definition of the adaptation strategy and yield stability targets of 13
breeding programmes from analysis of multilocation yield trials repeated in time
2.4 Flow chart of steps for making variety recommendations from analysis of multilocation 15
yield trials repeated in time
5.1 Genotype yields modelled by joint regression and nominal yields modelled by factorial 34
regression on rainfall amount, for durum wheat varieties across Italian locations
5.2 AMMI analysis of the genotype-location data matrix in Table 4.4 36
5.3 Scores on the first two GL interaction PC axes of 18 bread wheat genotypes and four 37
Italian subregions
5.4 Nominal yields of lucerne varieties modelled as a function of the score on the first GL 40
interaction PC axis of ten Italian locations, or the first GE interaction PC axis of four
artificial environments
5.5 Scores on the first two GL interaction PC axes of 20 Italian locations, definition of four 41
subregions for bread wheat variety recommendation by grouping sites with the same
expected winning genotype, and classification of locations into five groups based on
cluster analysis of site scores on PC 1 and PC 2
5.6 Cluster analysis of test locations performed on site scores on the first GL interaction PC 43
axis, using the lack of significant GL interaction within group of locations as the truncation
criterion for definition of groups
5.7 Geographic position of test locations for lucerne in northern Italy, and provisional definition 43
of three subregions for a specific adaptation strategy based on AMMI analysis
complemented by cluster analysis and additional information on relevant environmental
variables of sites
5.8 Yield response of two hypothetical genotypes modelled as a function of site mean yield 53
for original, log-transformed and within-location standardized data under the assumption
of within-location phenotypic standard deviation of genotype yields proportional to site
mean yield
5.9 Nominal yields of genotypes modelled as a function of the first GL interaction PC axis of 54
locations for original and log-transformed data, with indication of scaled PC 1 scores of
sites and estimation of the main crossover point
5.10 Expected pair of top-ranking cultivars for yield at each combination of 10 annual rainfall 58
by 10 mean winter temperature values of locations, according to an AMMI-1 model in
which site score on PC 1 is predicted by multiple regression as a function of the two
environmental variables
6.1 Hypothetical selection locations for three adaptation strategies compared in terms of 68
predicted yield gains
7.1 Yield responses across five environments of hypothetical stable-yielding genotypes 80
according to two concepts of stability, using non-regression or regression stability measures
7.2 Frequency of yield (or relative yield) values across environments of two genotypes having 84
same mean yield and contrasting stability as measured by the variance of yield values,
and estimation of a yield reliability index equal to the lowest yield that is expected in 75%
of cases
8.1 Geographic position of test locations and definition of two subregions for a specific 89
adaptation strategy based on pattern analysis and AMMI + cluster analysis results
8.2 Nominal yield and nominal yield reliability as lowest yield expected in 80% of cases, of 98
eight cultivars modelled as a function of the scores on the first GL interaction PC axis of
14 locations
8.3 Expected pair of top-ranking cultivars for yield at each combination of 10 annual rainfall 99
by 10 mean winter temperature values of locations, according to a two-covariate factorial
regression model
8.4 Expected pair of top-ranking cultivars for yield reliability at each combination of 10 103
annual rainfall by 10 mean winter temperature values of locations, according to a two-
covariate factorial regression model
|
| any_adam_object | 1 |
| author | Annicchiarico, Paolo |
| author_facet | Annicchiarico, Paolo |
| author_role | aut |
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| ctrlnum | (OCoLC)249562029 (DE-599)BVBBV017713496 |
| dewey-full | 631.523 |
| dewey-hundreds | 600 - Technology (Applied sciences) |
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| dewey-tens | 630 - Agriculture and related technologies |
| discipline | Agrarwissenschaft Agrar-/Forst-/Ernährungs-/Haushaltswissenschaft / Gartenbau Pflanzenbau |
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| id | DE-604.BV017713496 |
| illustrated | Illustrated |
| indexdate | 2024-07-09T19:21:05Z |
| institution | BVB |
| isbn | 9251048703 |
| language | English |
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| physical | XI, 115 S. graph. Darst. 1 CD-RIM (12 cm) |
| publishDate | 2002 |
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| publisher | FAO |
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| series | FAO plant production and protection paper |
| series2 | FAO plant production and protection paper |
| spelling | Annicchiarico, Paolo Verfasser aut Genotype x environment interaction challenges and opportunities for plant breeding and cultivar recommendations by Paolo Annicchiarico Rome FAO 2002 XI, 115 S. graph. Darst. 1 CD-RIM (12 cm) txt rdacontent n rdamedia nc rdacarrier FAO plant production and protection paper 174 Kultivierung (DE-588)4165953-3 gnd rswk-swf Pflanzen (DE-588)4045539-7 gnd rswk-swf Pflanzenzüchtung (DE-588)4045599-3 gnd rswk-swf Landwirtschaft (DE-588)4034402-2 gnd rswk-swf (DE-588)4048476-2 Ratgeber gnd-content Pflanzenzüchtung (DE-588)4045599-3 s Landwirtschaft (DE-588)4034402-2 s DE-604 Pflanzen (DE-588)4045539-7 s Kultivierung (DE-588)4165953-3 s FAO plant production and protection paper 174 (DE-604)BV012441336 174 HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=010649090&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Annicchiarico, Paolo Genotype x environment interaction challenges and opportunities for plant breeding and cultivar recommendations FAO plant production and protection paper Kultivierung (DE-588)4165953-3 gnd Pflanzen (DE-588)4045539-7 gnd Pflanzenzüchtung (DE-588)4045599-3 gnd Landwirtschaft (DE-588)4034402-2 gnd |
| subject_GND | (DE-588)4165953-3 (DE-588)4045539-7 (DE-588)4045599-3 (DE-588)4034402-2 (DE-588)4048476-2 |
| title | Genotype x environment interaction challenges and opportunities for plant breeding and cultivar recommendations |
| title_auth | Genotype x environment interaction challenges and opportunities for plant breeding and cultivar recommendations |
| title_exact_search | Genotype x environment interaction challenges and opportunities for plant breeding and cultivar recommendations |
| title_full | Genotype x environment interaction challenges and opportunities for plant breeding and cultivar recommendations by Paolo Annicchiarico |
| title_fullStr | Genotype x environment interaction challenges and opportunities for plant breeding and cultivar recommendations by Paolo Annicchiarico |
| title_full_unstemmed | Genotype x environment interaction challenges and opportunities for plant breeding and cultivar recommendations by Paolo Annicchiarico |
| title_short | Genotype x environment interaction |
| title_sort | genotype x environment interaction challenges and opportunities for plant breeding and cultivar recommendations |
| title_sub | challenges and opportunities for plant breeding and cultivar recommendations |
| topic | Kultivierung (DE-588)4165953-3 gnd Pflanzen (DE-588)4045539-7 gnd Pflanzenzüchtung (DE-588)4045599-3 gnd Landwirtschaft (DE-588)4034402-2 gnd |
| topic_facet | Kultivierung Pflanzen Pflanzenzüchtung Landwirtschaft Ratgeber |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=010649090&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV012441336 |
| work_keys_str_mv | AT annicchiaricopaolo genotypexenvironmentinteractionchallengesandopportunitiesforplantbreedingandcultivarrecommendations |