Methods of microarray data analysis III: papers from CAMDA '02
Saved in:
| Format: | Book |
|---|---|
| Language: | English |
| Published: |
Boston [u.a.]
Kluwer Academic
2003
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| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Physical Description: | X, 252 S. Ill., graph. Darst. |
| ISBN: | 1402075820 |
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Record in the Search Index
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| adam_text | METHODS OF MICROARRAY
DATA ANALYSIS III
Papers from CAMDA 02
edited by
Kimberly F Johnson
Cancer Center Information Systems
Duke University Medical Center
Durham, NC
Simon M Lin
Duke Bioinformatics Shared Resource
Duke University Medical Center
Durham, NC
KLUWER ACADEMIC PUBLISHERS
Boston / New York / Dordrecht / London
Contents
Contributing Authors ix
Preface • xi
Introduction 1
SECTION I TUTORIALS 7
THE BIOLOGY BEHIND GENE EXPRESSION: A BASIC TUTORIAL 9
MICHAEL F OCHS AND ERICA A GOLEMIS
MONITORING THE QUALITY OF MICROARRAY EXPERIMENTS 25
KEVIN R COOMBES, JING WANG, LYNNE V ABRUZZO
OUTLIERS IN MICROARRAY DATA ANALYSIS 41
RONALD K PEARSON, GREGORY E GONYE, AND JAMES S SCHWABER
SECTION II BEST PRESENTATION AWARD 57
ORGAN-SPECIFIC DIFFERENCES IN GENE EXPRESSION AND
UNIGENE ANNOTATIONS DESCRIBING SOURCE MATERIAL 59
DAVID N STIVERS, JING WANG, GARY L ROSNER, AND KEVIN R COOMBES
SECTION III ANALYZING IMAGES 73
vi Methods of Microarray Data Analysis III
CHARACTERIZATION, MODELING, AND SIMULATION OF MOUSE
MICROARRAY DATA 75
DAVID S LALUSH
TOPOLOGICAL ADJUSTMENTS TO GENECHIP EXPRESSION VALUES
ANDREY PTITSYN 93
SECTION IV NORMALIZING RAW DATA 103
COMPARISON OF NORMALIZATION METHODS FOR CDNA
MICROARRAYS 105
LILING WARREN, BEN LIU
SECTION V CHARACTERIZING TECHNICAL AND BIOLOGICAL
VARIANCE 123
SIMULTANEOUS ASSESSMENT OF TRANSCRIPTOMIC VARIABILITY
AND TISSUE EFFECTS IN THE NORMAL MOUSE 125
SHIBING DENG, TZU-MING CHU, AND RUSS WOLFINGER
HOW MANY MICE AND HOW MANY ARRAYS? REPLICATION IN
MOUSE CDNA MICROARRAY EXPERIMENTS 139
XlANGQIN CUI AND GARY A CHURCHILL
BAYESIAN CHARACTERIZATION OF NATURAL VARIATION IN GENE
EXPRESSION 1S5
MADHUCHHANDA BH ATTACH ARJEE, COLIN PRITCHARD, MIKKO J
SILLANPAA AND ELJA ARJAS
SECTION VI INVESTIGATING CROSS HYBRIDIZATION ON
OLIGONUCLEOTIDE MICROARRAYS 173
QUANTIFICATION OF CROSS HYBRIDIZATION ON
OLIGONUCLEOTIDE MICROARRAYS 175
Li ZHANG, KEVIN R COOMBES, LlANCHUN XIAO
ASSESSING THE POTENTIAL EFFECT OF CROSS-HYBRIDIZATION ON
OLIGONUCLEOTIDE MICROARRAYS 185
SEMAN KACHALO, ZAREMA ARBIEVA AND JIE LIANG
WHO ARE THOSE STRANGERS IN THE LATIN SQUARE? 199
WEN-PING HSIEH, TZU-MING CHU, AND RUSS WOLFINGER
Methods of Microarray Data Analysis III vii
SECTION VII FINDING PATTERNS AND SEEKING BIOLOGICAL
EXPLANATIONS 209
BAYESIAN DECOMPOSITION CLASSD7ICATION OF THE PROJECT
NORMAL DATA SET 211
T D MOLOSHOK, D DATTA, A V KOSSENKOV, M F OCHS
THE USE OF GO TERMS TO UNDERSTAND THE BIOLOGICAL
SIGNIFICANCE OF MICROARRAY DIFFERENTIALGENE EXPRESSION
DATA 233
RAM6N DfAZ-URIARTE, FATIMA AL-SHAHROUR, AND JOAQUfN DOPAZO
Acknowledgments 249
Index 251
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| spellingShingle | Methods of microarray data analysis III papers from CAMDA '02 Datenverarbeitung DNA microarrays Data processing Congresses Microarray (DE-588)4544227-7 gnd Oligonucleotide (DE-588)4133456-5 gnd DNS (DE-588)4070512-2 gnd Datenanalyse (DE-588)4123037-1 gnd |
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| title | Methods of microarray data analysis III papers from CAMDA '02 |
| title_auth | Methods of microarray data analysis III papers from CAMDA '02 |
| title_exact_search | Methods of microarray data analysis III papers from CAMDA '02 |
| title_full | Methods of microarray data analysis III papers from CAMDA '02 ed. by Kimberly F. Johnson ... |
| title_fullStr | Methods of microarray data analysis III papers from CAMDA '02 ed. by Kimberly F. Johnson ... |
| title_full_unstemmed | Methods of microarray data analysis III papers from CAMDA '02 ed. by Kimberly F. Johnson ... |
| title_short | Methods of microarray data analysis III |
| title_sort | methods of microarray data analysis iii papers from camda 02 |
| title_sub | papers from CAMDA '02 |
| topic | Datenverarbeitung DNA microarrays Data processing Congresses Microarray (DE-588)4544227-7 gnd Oligonucleotide (DE-588)4133456-5 gnd DNS (DE-588)4070512-2 gnd Datenanalyse (DE-588)4123037-1 gnd |
| topic_facet | Datenverarbeitung DNA microarrays Data processing Congresses Microarray Oligonucleotide DNS Datenanalyse Konferenzschrift 2002 Durham NC |
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