Microbial diversity and genetics of biodegradation:
Gespeichert in:
| Format: | Buch |
|---|---|
| Sprache: | German |
| Veröffentlicht: |
Tokyo
Japan Scientific Press
1997
Basel [u.a.] Karger |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | Literaturangaben |
| Beschreibung: | XII, 210 S. Ill., graph. Darst. |
| ISBN: | 3805565895 |
Internformat
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Datensatz im Suchindex
| _version_ | 1804126310777225216 |
|---|---|
| adam_text | Microbial Diversity
and Genetics ofBiodegradation
Edited by
Koki Horikoshi, Masao Fukuda and Toshiaki Kudo
JAPAN SCIENTIFIC SOCIETIES PRESS
Tokyo
KARGER
Basel-Freiburg-Paris-London-New York-New Delhi-
Bangkok • Singapore • Tokyo • Sydney
Contents
Preface
SECTION I OVERVIEW
1 Basic Knowledge and Perspectives on Microbial Diversity and
Genetics of Biodegradation of Aromatic Compounds
Masao Fukuda and Toshiaki Kudo I
Introduction 1
The Biochemistry of Xenobiotic Biodegradation 4
Microbial Ecology and Community Structure 5
Evolutionary Mechanisms and Pathway Diversity 6
SECTION II THE BIOCHEMISTRY OF XENOBIOTIC
BIODEGRADATION
1 Hybrid Enzymes between Biphenyl/Polychlorinated Biphenyl
(PCB) and Benzene/Toluene Degradative Pathway Dioxygenases
Masao Fukuda, et al 11
Introduction 11
Hybrid Enzyme Complexes Composed of Heterologous Subunits 13
Hybrid Enzymes Generated through Homologous Recombination 14
The Decisive Amino Acid Residue for Substrate Selectivity 17
The Functional Implication of the Residue 280 for Substrate
Selectivity 18
Conclusions 19
Summary 19
References 19
VI I I
2 Multiple Metabolic Pathways Involved in Polychlorinated
Biphenyl (PCB) Degradation in Rhodococcus sp Strain RHA1
James E Hauschild, et a I 21
Introduction 21
Strong PCB Degradation Activity of RHA1 22
Two Distinct PCB Degradation Systems in RHA1 23
Two Co-expressed Ring Cleavage Enzymes for PCB Degaradation
in RHA1 27
Summary 31
References 32
3 Biochemistry of 2,4-Dichlorophenoxyacetic Acid (2,4-D)
Degradation: Evolutionary Implications
Robert P Hausinger, et al 35
Introduction 35
The 2,4-D Degradation Pathway in R eutropha JMP134 (pJP4) 36
Variations on a Theme: Similar Pathway in Other Microbes 41
Evidence for Mechanistically Distinct Enzymes in a pJP4-like
Pathway and for Alternative Pathways 43
Evolutionary Origins of the pJP4 2,4-D Metabolic Pathway 46
Summary 48
References 49
4 Regulation of 2,4-Dichlorophenoxyacetic Acid Degradative
Operons
Alice D Wright and Larry Snyder 53
Introduction 53
Study of 2,4-D Degradative Operons 54
Regulation of Bacterial Operons 56
Regulation of 2,4-D Degradative Operons in Strain JMP134 56
Analysis of the tfdR DNA Sequence 58
Regulation of 2,4-D Metabolizing Genes from Burkholderia sp
RSAC 58
Summary 59
References 60
SECTION III MICROBIAL ECOLOGY AND COMMUNITY
STRUCTURE
1 What is the Global Pattern of Chloroaromatic Degarading
Microbial Populations?
James M Tiedje, et al 65
Introduction 65
Study Sites 66
Geographic Patterns of Chloroaromatic Degraders 67
Geographic Patterns of tfdA Families 70
What Are the 2,4-D Degraders in Pristine Soil? 70
References 74
2 Genome Confomation and Genetic Diversity: A Closer Look at
Several Species of Rhodococcus Isolated from Contaminated Soils
Nancy L Tonso 75
Introduction 75
Background 75
Types of Genomes Harboring PCB Degradative Genes 78
Genome Conformation of Several Rhodococcus Isolated from
Contaminated Soils in Japan 79
Summary 80
References 80
3 Experimental Studies on the Evolution of Bacteria That Degrade
2,4-Dichlorophenoxyacetic Acid
Richard E Lenski, et al 83
General Introduction 83
Effects of Habitat Structure 85
Effects of Substrate Concentration 89
Summary 94
References 95
X
4 Effects of Toxic Metabolites on Dynamics and Fitness in
Laboratory Populations
Michael Travisano 97
Introduction 97
Life History(A Model) 98
Population Dynamics 99
Fitness 106
Summary I l l
References 112
5 Isolation and Characterization of Pentachloronitrobenzene
(PCNB) Degrading Bacterium, Pseudomonas aeruginosa
Strain 1-41
Katsunori Tamura, et al 113
Introduction 113
Distribution of PCNB Degrading Bacteria 114
Main Pathway for Microbial Degradation of PCNB in Soil 115
Characterization of PCNB Degrading Bacterium 1-41 116
Influence of PCNB on Soil Microorganisms 118
Summary 118
References 120
6 Degradation of Aromatics and Haloaromatics by Halophilic
Bacteria
Patrick Oriel, et al 123
Introduction 123
Isolation of Halophiles from Michigan Petroleum Brine 124
Isolation of 2,4-D-Degrading Haloalkaliphiles from Alkali Lake,
Oregon 128
Conclusions 129
References 129
SECTION IV EVOLUTIONARY MECHANISMS AND PATHWAY
DIVERSITY
1 Isolation and Characterization of Diverse Polychlorinated
Biphenyl (PCB)/Biphenyl-Degrading Gram-positive Bacteria
Toshiaki Kudo, et al 133
Introduction 133
Isolation, Identification and Growth of PCB/Biphenyl-Degrading
Rhodococcus sp 134
Diversity of bph Gene Cluster of PCB-Degrading Rhodococci 140
Biphenyl Degradation by Paenibacillus sp : An Analysis of Two
Different meta Pathways 144
Summary 144
References 145
2 The Evolution of meto-Cleavage Pathway for Degaradation of
Polychlorinated Biphenyl (PCB)/Biphenyl in Gram-negative
Bacteria
Michihisa Maeda, et al 149
Introduction 149
PCB Degradation Pathway 150
Enrichment Screening for PCB/Biphenyl-Degrading Bacteria 151
Characterization of Alkali-Tolerant Bacteria 152
Characterization of Solvent-Tolerant PCB/Biphenyl-Degrading
Bacteria 155
Comparison of Solvent-Tolerance among Biphenyl/PCB or
Toluene-Degrading Bacteria 157
Analysis of PCB Degradation Profiles 159
Gene Structure of bph/tod Operon 161
Evolution of bph/tod Pathway 164
Summary 165
References 165
3 Microbial, Genomic, and Genetic Diversity within Aromatic
Hydrocarbon Degrading Bacteria: A Phylogenetic Perspective
Michael S Roberts 169
General Introduction 169
Structure of the meta-Cleavage Pathway 176
Summary 182
References 183
4 Structure and Function of Biphenyl/Polychlorinated Biphenyl
(PCB) Degradation Genes in a Gram-positive Bacterium
Rhodococcus sp RHA1
Eiji Masai, et al 185
Introduction 185
Cloning of Biphenyl Dioxygenase (bphA), Dihydrodiol Dehydro-
genase (bphB), and meta-Cleavage Enzyme (bphC) Genes in
Rhodococcus sp RHA1 187
Expression of bphA CB Genes in Escherichia coli 190
Expression of bphA CB Genes in Rhodococcus Host 191
Disruption of the bphAl Gene 191
Cloning of the/we/o-Cleavage Pathway Genes 192
Discussion 193
Summary 193
References 194
5 Genetic Diversity of 2,4-Dichlorophenoxyacetic Acid (2,4-D)
Catabolic Genes
Cindy H Nakatsu, et al 197
Introduction 197
Genetics of 2,4-D Degradation by Alcalienes eutrophus JMP134 198
Other 2,4-D Degrading Bacterial Isolates 200
Location of 2,4-D Genes 200
Diversity in Nucleotide Sequence 201
Diversity in Gene Order 202
Summary 203
References 204
Index 207
|
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| spelling | Microbial diversity and genetics of biodegradation ed. by Koki Horikoshi ... Tokyo Japan Scientific Press 1997 Basel [u.a.] Karger XII, 210 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Literaturangaben D 2,4- (DE-588)4229553-1 gnd rswk-swf Populationsgenetik (DE-588)4046804-5 gnd rswk-swf Mikrobieller Abbau (DE-588)4039197-8 gnd rswk-swf Polychlorierte Biphenyle (DE-588)4140481-6 gnd rswk-swf Artenreichtum (DE-588)4131912-6 gnd rswk-swf Mikroorganismus (DE-588)4039226-0 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Mikroorganismus (DE-588)4039226-0 s Artenreichtum (DE-588)4131912-6 s Populationsgenetik (DE-588)4046804-5 s D 2,4- (DE-588)4229553-1 s Mikrobieller Abbau (DE-588)4039197-8 s DE-604 Polychlorierte Biphenyle (DE-588)4140481-6 s Horikoshi, Koki Sonstige oth HEBIS Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=007941319&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Microbial diversity and genetics of biodegradation D 2,4- (DE-588)4229553-1 gnd Populationsgenetik (DE-588)4046804-5 gnd Mikrobieller Abbau (DE-588)4039197-8 gnd Polychlorierte Biphenyle (DE-588)4140481-6 gnd Artenreichtum (DE-588)4131912-6 gnd Mikroorganismus (DE-588)4039226-0 gnd |
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| title | Microbial diversity and genetics of biodegradation |
| title_auth | Microbial diversity and genetics of biodegradation |
| title_exact_search | Microbial diversity and genetics of biodegradation |
| title_full | Microbial diversity and genetics of biodegradation ed. by Koki Horikoshi ... |
| title_fullStr | Microbial diversity and genetics of biodegradation ed. by Koki Horikoshi ... |
| title_full_unstemmed | Microbial diversity and genetics of biodegradation ed. by Koki Horikoshi ... |
| title_short | Microbial diversity and genetics of biodegradation |
| title_sort | microbial diversity and genetics of biodegradation |
| topic | D 2,4- (DE-588)4229553-1 gnd Populationsgenetik (DE-588)4046804-5 gnd Mikrobieller Abbau (DE-588)4039197-8 gnd Polychlorierte Biphenyle (DE-588)4140481-6 gnd Artenreichtum (DE-588)4131912-6 gnd Mikroorganismus (DE-588)4039226-0 gnd |
| topic_facet | D 2,4- Populationsgenetik Mikrobieller Abbau Polychlorierte Biphenyle Artenreichtum Mikroorganismus Aufsatzsammlung |
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