Avian molecular evolution and systematics:
Saved in:
| Format: | Book |
|---|---|
| Language: | English |
| Published: |
San Diego [u.a.]
Academic Press
1997
|
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Physical Description: | XX, 382 S. graph. Darst. |
| ISBN: | 0124983154 |
Staff View
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| 245 | 1 | 0 | |a Avian molecular evolution and systematics |c ed. by David P. Mindell |
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Record in the Search Index
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| adam_text |
AVIAN
MOLECULAR
EVOLUTION
AND
SYSTEMATICS
Edited by
DAVID P MINDELL
Museum of Zoology amp; Department of Biology
University of Michigan
Ann Arbor, Michigan
ACADEMIC PRESS
SAN DIEGO LONDON • BOSTON:, ,NEWYdRKftf); i'SYDNE^ TOKYO TORONTO
,*M \;
Contents
Contributors
Preface
xui
xvii
PARTI
Molecular Sequences and
Evolutionary History in Birds
Molecular Evolution of the Mitochondrial Genome
Thomas W Quinn
I Introduction
II Mitochondria: An Ancient Legacy
III The Vertebrate Mitochondrial Genome
IV Avian Mitochondrial Genomes
A An Altered Gene Order throughout Aves
B Other Features of the Avian Mitochondrial Genome
V Major Genomic Features as Characters for Phylogenetic
Analysis
A Two Approaches to Phylogenetic Analysis Using DNA Sequence
Information
13 The Sister Taxon to Birds: Evidence from Comparisons of DNA
Sequence and Genomic Landmarks
C Other Potentially Informative Characters
n
er of Mitochondrial Sequences
if Mitochondrial DNA: Not Unusual
e for Studies of Avian Phylogenetics
led by Numts
as Genetic Markers at Several Scales
7ayne K Potts
I Region Sequences as Tools
ilution
i Marshall
on and Evolution
ence Data and Structural Features
lected Plasmid Genomic Library
Fechniques
,' for Microsatellite-Bearing Clones
ons
-ligher Taxa
ient DNA)
lalysis
irtners in Male Long-Tailed Manakins
n Sheep
usions
III Population Strui
A Global Phyloge
B Bottlenecking a
C Colonization R
D Intraspecific Va
E Phylogeograph
F Recent Mixing
IV Higher Level Sv
References
4 The Window of'ri
Based on Mitocho
William S Moore anc
I Introduct ion
A Avian Phyloge
B Objectives of 1
C Properties of L
Phylogenies
II Materials and N
A Producing Seq
III Results
A Sequences
B Phylogenetic i
C Base Composi
D Pairwise Com
E The Relations!
F The Relations!
Transversions
G The Relations
Substitutions
H Short Intemoi
Resolution
I Rate Variatior
J How Much Si
IV Discussion
A The Window
B Molecular Cl(
C Conclusions a
References
Appendix I
Appendix II
Contents vii
III Population Structure and Intraspecific Taxonomy 64
A Global Phylogeography of the Dunlin 66
B Bottlenccking and Recent Population Expansion in Knots 69
C Colonization Routes of Chaffinches in the Atlantic Islands 70
D Intraspecific Variation in Canada Geese 73
E Phylogeography of Gray-Crowned Babblers 74
F Recent Mixing of Lineages in Adelie Penguins and in Snow Geese 75
IV Higher Level Systematics 77
References 79
4 Tlie Window of Taxonomic Resolution for Phylogenies
Based on Mitochondrial Cytochrome b
William S Moore and Victor R DeFilippis
I
II
III
IV
Introduction
A Avian Phylogenies Inferred from Mitochondrial DNA
B Objectives of This Study
C Properties of DNA Sequences That Are Ideal for Recovering
Phylogenies
Materials and Methods
A Producing Sequence Data
Results
A Sequences
B Phylogenetic Analysis
C Base Composition
D Pairwise Comparisons among Divergent Sequences
E The Relationship between Transitions and Transversions
F The Relationship between Taxonomic Divergence and Saturation of
Transversions
G The Relationship between Taxonomic Divergence and Amino Acid
Substitutions
H Short Internodes, Long Terminal Branches, and Phylogenetic
Resolution
I Rate Variation within Lineages
J How Much Sequence in a Pilot Study
Discussion
A The Window of Taxonomic Resolution for Avian Phylogenies
B Molecular Clock
C Conclusions and Advice
References
Appendix I
Appendix II
viii Contents
5 Phylogeny and Evolution of12S rDNA
in Gruiformes (Aves)
Peter Houde, Alan Cooper, Elizabeth Leslie, Allan £ Strand, and
Gabriel A Montafio
I In t roduc t ion 121
A The Birds 122
B The Gene 125
II Methods 127
A DNA Sequence Data 127
B Phylogeny Reconstruction 133
III Phylogenetic Inferences 134
A Results 134
B Discussion 139
IV Molecular Evolution 142
A Sequence Divergence 142
B Evolutionary Dynamics of 12S rDNA 144
C Character Evolution of 12S rDNA 148
V Implications of 12S Evolution for Phylogenetic Inference 152
VI Summary 153
References 154
6 Phylogeny of the Pelacaniformes: Molecular Systematics of a
Privative Group
Douglas Siegel-Causey
I Introduction 159
A The Problem of the Putatively Privative Pelecaniformes 160
B The Enigma of Balaeniceps 163
II Methods 164
A Data Sets and Analysis 164
III Results 166
A Molecular Evidence 166
B Morphological and Behas'ioral Evidence 167
IV Discussion 167
References 170
Contents ix
7 Tlie Phylogeny ofRatite Birds: Resolving Conflicts between
Molecular and Morphological Data Sets
Krista Lee, Julie Feinstein, and Joel Cracraft
I Introduction 173
II Materials and Methods 176
A Taxa 176
B DNA Extraction and Sequencing 177
C Phylogenetic Analysis 180
III Results 181
A Morphological Analysis 181
B Sequence Analysis 184
C Total Evidence Solution 185
IV Discussion 186
A Ratite Interrelationships: Morphological Data 186
li Why Do Molecular and Morphological Data Conflict? 187
V Conclusions 190
References 192
Appendix I 196
Appendix II 209
8 Phylogenetic Relationships among and within Select Avian
Orders Based on Mitochondrial DNA
David P Mindell, Michael D Sorenson, Christopher J
Huddleston, Hector C Miranda, Jr , Alec Knight, Steven J
Sawchuk, and Tamaki Yuri
I Introduction 214
II Issues in Phylogenetic Analyses 215
A Constraints on Molecular Evolution 215
B Sampling of Characters and Taxa 218
III Methods ' 219
A Study Characters and Taxa 219
B Phylogenetic Analyses 222
IV Results and Discussion 225
A Phylogenetic Placement of Anseriformes and Galliformes 225
13 Relationships among Neognath Orders 228
C Placement of Buttonquail, Hoatzin and Flamingoes 230
D Relationships among Passerifornies 233
E Relationships among Anseriformes and Galliformes 233
F Relationships among Falconiformes and Strigiformes 235
x Contents
j V Conclusions 241
' References 243
PARTII
Applying Phylogeny and Population
Genetics to Broader Issues
9 Relevance of Microevolutionary Processes to Higher Level
Molecular Systematics
Scott V Edwards
I Introduction 251
II Molecular Variability 253
A The Specter of Polymorphism 253
B Pattern of Nucleotide Substitution 258
III Population Processes 262
A Gene and Species Trees 266
B Permanent Effects of Incomplete Lineage Sorting and Hybridization 266
C Dating Biogeographic Events: Coalescence in Subdivided Populations 267
D Selection 271
IV Conclusion 273
References 274
1 0 Phylogeny in Studies of Bird Ecology, Behavior,
and Morphology
Frederick H Sheldon and Linda A Whittingham
I Introduction 279
II Accurate Phylogenetic Estimates and Historical Ecology 281
A An Example of the Phylogenetic Framework Approach 283
III Application of the Comparative Approach to Classic
Problems of Evolution 285
A Adaptation 285
B Phylogenetic Constraints 291
Contents xi
IV Summary 294
References • 296
1 1 Phylogeographic Studies of North American Birds
Robert M Zink
I Introduction 301
II Allozymic Studies of Avian Geographic Variation 302
III The DNA Revolution in Intraspecific Studies 303
IV Phylogeographic Studies in Birds 305
A Nature of Variation 305
B Haplotype Phylogenies and Directionality 310
C Estimates of Gene Flow 310
D Description and Significance of Genetic Variation among Populations 311
V Comparative Phylogeography 314
A Method 314
B Some Avian Results 315
C Mismatch Distributions and Population Histories 318
D Comparative Phylogeography and the History of Communities 320
VI Prospectus 320
References • 321
1 2 The Speciation of South American and African Birds
in Montane Regions
Michael S Roy, Jose Maria Cardoso da Silva, Peter Arctander,
Jaime Garcia-Moreno, and Jon Fjeldsa
I Introduction 325
II The Model Hypothesis 326
A Basic Assumptions 326
B Method 327
III Old and New Species in South America 328
IV Old and New Species in Africa 330
V Implications for the Model 332
VI Case Studies of Biogeographic Patterns in Tropical
Mountains 333
A The Andes 333
B East African Mountains 334
VII Discussion and Summary 339
References 341
xii Contents
-j 1 3 Studies of Avian Ancient DNA: Fromfurassic Park
' to Modern Island Extinctions
Alan Cooper
I Introduction 345
II Review of Ancient DNA Research 346
A Techniques 347
III Systematics and Paleoecological Applications 349
A Ratite Systematics 349
B Paleoecological Studies 362
IV Summary 368
V Future Research 368
References 369
Index 375 |
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| spelling | Avian molecular evolution and systematics ed. by David P. Mindell San Diego [u.a.] Academic Press 1997 XX, 382 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier Birds cabt Evolution cabt Molecular Biology cabt Oiseaux - Classification - Aspect moléculaire Oiseaux - Génétique moléculaire Oiseaux - Génétique moléculaire ram Oiseaux - Morphologie Oiseaux - Morphologie ram Oiseaux - Évolution Oiseaux - Évolution ram Birds Classification Molecular aspects Birds Evolution Birds Molecular genetics Birds Morphology Molekulargenetik (DE-588)4039987-4 gnd rswk-swf Evolution (DE-588)4071050-6 gnd rswk-swf Systematik (DE-588)4128136-6 gnd rswk-swf Vögel (DE-588)4063673-2 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Vögel (DE-588)4063673-2 s Molekulargenetik (DE-588)4039987-4 s Systematik (DE-588)4128136-6 s DE-604 Evolution (DE-588)4071050-6 s Mindell, David P. Sonstige oth HEBIS Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=007754307&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Avian molecular evolution and systematics Birds cabt Evolution cabt Molecular Biology cabt Oiseaux - Classification - Aspect moléculaire Oiseaux - Génétique moléculaire Oiseaux - Génétique moléculaire ram Oiseaux - Morphologie Oiseaux - Morphologie ram Oiseaux - Évolution Oiseaux - Évolution ram Birds Classification Molecular aspects Birds Evolution Birds Molecular genetics Birds Morphology Molekulargenetik (DE-588)4039987-4 gnd Evolution (DE-588)4071050-6 gnd Systematik (DE-588)4128136-6 gnd Vögel (DE-588)4063673-2 gnd |
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| title | Avian molecular evolution and systematics |
| title_auth | Avian molecular evolution and systematics |
| title_exact_search | Avian molecular evolution and systematics |
| title_full | Avian molecular evolution and systematics ed. by David P. Mindell |
| title_fullStr | Avian molecular evolution and systematics ed. by David P. Mindell |
| title_full_unstemmed | Avian molecular evolution and systematics ed. by David P. Mindell |
| title_short | Avian molecular evolution and systematics |
| title_sort | avian molecular evolution and systematics |
| topic | Birds cabt Evolution cabt Molecular Biology cabt Oiseaux - Classification - Aspect moléculaire Oiseaux - Génétique moléculaire Oiseaux - Génétique moléculaire ram Oiseaux - Morphologie Oiseaux - Morphologie ram Oiseaux - Évolution Oiseaux - Évolution ram Birds Classification Molecular aspects Birds Evolution Birds Molecular genetics Birds Morphology Molekulargenetik (DE-588)4039987-4 gnd Evolution (DE-588)4071050-6 gnd Systematik (DE-588)4128136-6 gnd Vögel (DE-588)4063673-2 gnd |
| topic_facet | Birds Evolution Molecular Biology Oiseaux - Classification - Aspect moléculaire Oiseaux - Génétique moléculaire Oiseaux - Morphologie Oiseaux - Évolution Birds Classification Molecular aspects Birds Evolution Birds Molecular genetics Birds Morphology Molekulargenetik Systematik Vögel Aufsatzsammlung |
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