Ontosync: synchronizing ontologies and databases for system spanning queries
Saved in:
| Main Author: | |
|---|---|
| Format: | Book |
| Language: | English |
| Published: |
Göttingen
Sierke Verl.
2010
|
| Edition: | 1., Aufl. |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Item Description: | Zugl.: Braunschweig, Techn. Univ., Diss. 2010 |
| Physical Description: | IX, 127 S. Ill., graph. Darst. |
| ISBN: | 9783868442670 |
Staff View
MARC
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| 245 | 1 | 0 | |a Ontosync |b synchronizing ontologies and databases for system spanning queries |c Andreas Kupfer |
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Record in the Search Index
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| adam_text | Contents
1
Introduction
1
1.1 Motivation............................... 2
1.2
Database
Schema Evolution..................... 3
1.3
Overview................................
5
2 Basic
Concepts
7
2.1
Ontology
................................ 7
2.2 Knowledge
base
............................ 9
2.3
Similarities between databases and ontologies or knowledge bases
12
2.4
Description Logics
.......................... 14
2.5
OWL
.................................. 17
2.5.1
OWL representations
..................... 18
2.5.2
OWL language constructs
.................. 20
2.5.3
OWL language levels
..................... 23
2.6
Biological Databases and Ontologies
................. 25
2.7
Bio-Ontologies
............................. 28
3
Mapping database
schemas
to ontologies
35
3.1
Database ontologies
..........................
3G
3.1.1
Related Work
......................... 36
3.1.2
The structure of our database ontology
........... 37
3.1.3
Properties of database ontologies
.............. 39
3.1.4
Modeling objects: instances vs. subclasses
......... 41
3.2
Creating database ontologies
..................... 43
3.2.1
Introduction
.......................... 44
3.2.2
Architecture
.......................... 45
3.3
The TRANSPATH® signal transduction pathway database
.... 49
3.3.1
Recreating a database from the XML export
........ 50
3.3.2
Heuristics to improving the created schema
......... 52
3.3.3
BIOBASE
Knowledge Library
................ 56
4
Evolution
59
4.1
Introduction to signal transduction pathways
............ 60
4.2
Pathway domain model
........................ 63
4.3
Ontology annotation
......................... 65
4.3.1
Adding concepts
....................... 65
4.3.2
Adding object properties
................... 66
4.3.3
Import from other ontologies
................. 68
4.3.4
Changing foreign key references
............... 70
4.3.5
Datatype properties
...................... 72
4.4
Linking domain model and database ontology
........... 74
4.5
Query execution
............................ 77
4.5.1
A semantic database web search
............... 78
4.5.2
Evaluation
........................... 83
5
Visualization and Annotation with Protege
87
5.1
Protege user interface
......................... 88
5.2
Comparing ontology visualizations
.................. 89
5.2.1
TGViz
............................. 91
5.2.2
Jambalaya
........................... 92
5.2.3
OWLViz
............................ 94
5.2.4
Ontoviz
............................ 96
5.2.5
VisAVis
............................ 96
5.2.6
Summary
........................... 98
5.3
Improving the ontology visualization in
Protégé
.......... 99
5.3.1
OWL Property Visualization
................. 100
5.3.2
Interaction improvements
.................. 101
5.3.3
Evaluation
........................... 104
5.3.4
Future work
.......................... 105
6
Synchronization
107
6.1
Architecture logging and synchronizing
.............. 108
6.2
Creating
................................ 109
6.3
Deleting
................................ 110
6.4
Altering
................................
Ill
6.4.1
Rename
............................
Ill
6.4.2
Datatype
........................... 112
6.4.3
Referential integrity
...................... 112
6.5
Evaluation
............................... 113
7
Conclusions
115
Bibliography
117
|
| any_adam_object | 1 |
| author | Kupfer, Andreas |
| author_facet | Kupfer, Andreas |
| author_role | aut |
| author_sort | Kupfer, Andreas |
| author_variant | a k ak |
| building | Verbundindex |
| bvnumber | BV036717286 |
| classification_rvk | ST 515 |
| ctrlnum | (OCoLC)697277779 (DE-599)DNB1005006482 |
| dewey-full | 005.74 006.332 |
| dewey-hundreds | 000 - Computer science, information, general works |
| dewey-ones | 005 - Computer programming, programs, data, security 006 - Special computer methods |
| dewey-raw | 005.74 006.332 |
| dewey-search | 005.74 006.332 |
| dewey-sort | 15.74 |
| dewey-tens | 000 - Computer science, information, general works |
| discipline | Informatik |
| edition | 1., Aufl. |
| format | Book |
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| indexdate | 2024-07-09T22:46:29Z |
| institution | BVB |
| isbn | 9783868442670 |
| language | English |
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| spelling | Kupfer, Andreas Verfasser aut Ontosync synchronizing ontologies and databases for system spanning queries Andreas Kupfer 1., Aufl. Göttingen Sierke Verl. 2010 IX, 127 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Zugl.: Braunschweig, Techn. Univ., Diss. 2010 SQL (DE-588)4134010-3 gnd rswk-swf Visualisierung (DE-588)4188417-6 gnd rswk-swf Synchronisierung (DE-588)4130847-5 gnd rswk-swf Schemaevolution (DE-588)4639196-4 gnd rswk-swf Abfrage (DE-588)4198788-3 gnd rswk-swf OWL Informatik (DE-588)4396527-1 gnd rswk-swf Datenbanksystem (DE-588)4113276-2 gnd rswk-swf Ontologie Wissensverarbeitung (DE-588)4827894-4 gnd rswk-swf SPARQL (DE-588)7693644-2 gnd rswk-swf (DE-588)4113937-9 Hochschulschrift gnd-content Ontologie Wissensverarbeitung (DE-588)4827894-4 s Schemaevolution (DE-588)4639196-4 s Datenbanksystem (DE-588)4113276-2 s Abfrage (DE-588)4198788-3 s OWL Informatik (DE-588)4396527-1 s SPARQL (DE-588)7693644-2 s SQL (DE-588)4134010-3 s Visualisierung (DE-588)4188417-6 s Synchronisierung (DE-588)4130847-5 s DE-604 Digitalisierung UB Passau application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=020635239&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Kupfer, Andreas Ontosync synchronizing ontologies and databases for system spanning queries SQL (DE-588)4134010-3 gnd Visualisierung (DE-588)4188417-6 gnd Synchronisierung (DE-588)4130847-5 gnd Schemaevolution (DE-588)4639196-4 gnd Abfrage (DE-588)4198788-3 gnd OWL Informatik (DE-588)4396527-1 gnd Datenbanksystem (DE-588)4113276-2 gnd Ontologie Wissensverarbeitung (DE-588)4827894-4 gnd SPARQL (DE-588)7693644-2 gnd |
| subject_GND | (DE-588)4134010-3 (DE-588)4188417-6 (DE-588)4130847-5 (DE-588)4639196-4 (DE-588)4198788-3 (DE-588)4396527-1 (DE-588)4113276-2 (DE-588)4827894-4 (DE-588)7693644-2 (DE-588)4113937-9 |
| title | Ontosync synchronizing ontologies and databases for system spanning queries |
| title_auth | Ontosync synchronizing ontologies and databases for system spanning queries |
| title_exact_search | Ontosync synchronizing ontologies and databases for system spanning queries |
| title_full | Ontosync synchronizing ontologies and databases for system spanning queries Andreas Kupfer |
| title_fullStr | Ontosync synchronizing ontologies and databases for system spanning queries Andreas Kupfer |
| title_full_unstemmed | Ontosync synchronizing ontologies and databases for system spanning queries Andreas Kupfer |
| title_short | Ontosync |
| title_sort | ontosync synchronizing ontologies and databases for system spanning queries |
| title_sub | synchronizing ontologies and databases for system spanning queries |
| topic | SQL (DE-588)4134010-3 gnd Visualisierung (DE-588)4188417-6 gnd Synchronisierung (DE-588)4130847-5 gnd Schemaevolution (DE-588)4639196-4 gnd Abfrage (DE-588)4198788-3 gnd OWL Informatik (DE-588)4396527-1 gnd Datenbanksystem (DE-588)4113276-2 gnd Ontologie Wissensverarbeitung (DE-588)4827894-4 gnd SPARQL (DE-588)7693644-2 gnd |
| topic_facet | SQL Visualisierung Synchronisierung Schemaevolution Abfrage OWL Informatik Datenbanksystem Ontologie Wissensverarbeitung SPARQL Hochschulschrift |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=020635239&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| work_keys_str_mv | AT kupferandreas ontosyncsynchronizingontologiesanddatabasesforsystemspanningqueries |